Prupe.7G208700_v2.0.a1

RNA helicase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0011216
Physical Location & Seq
Forward (+)
19146787 .. 19148111
1325 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G208700.1

Sequence Viewer

Length: 729 bp
ATGGAAAATAGGGATCAGGGTGCAGCTCAAAACCATCCTTGTGCTTCCTGCAAGCAGCAGAGGAGAAAATGTGATGAGACCTGTGAAATGGCCCCATACTTTCCAGCCAGCAGGTACAGTGAGTTCCAAAATGCTCATAAGATCTTTGGTGTGAGCAACATCCAAAAGATCATGGCCATGGCTGCACCTGATCAAAAACAGGCAGCTGCTGAAAGCATTCTCACGGAAGGGAATGCAAGGAAAAATGATCCTGTGAATGGTTGTCTTGGCATTATCAGAGGTCTCAATTCCCAAATTCAGGGACTTGAAAGAGAACTCCATATTATGAAACAGCACCTAGAACTTTGCAAGGAGAAGGAAGAGCTTGATGGGAAAAAAAACCAATCAAAAGAAGAAGACTTGCAGCATGATCAATCTGATGATCTCAATTCACCAATCCTTCCTGATCTGCCCTCTCATGTCATAACTGAGATGAGAAAATATGAACAAGGATACAATTACTGGTCAACTTTGGAAGATGCAGAAGAGAAGGTCTTTGACATCCGGATCATAGAACCAGTATTATTTGAATCCAATCTGAAGGGGAATGCAAGTTCTAGTGCACCAGGAGAAACCAGAGATGGAAAAGAGAAAGAGGAAGGGGAGATTGCTAGTGCTGCTGCCTCCAAGGCCAAAGAGAAGCAACCTTCAGAGAGTTTGCGAGAGAAAACCACAGAAGATAAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DEAD Helicase_C

Protein Analysis

243

Amino Acids

27.17

Weight (kDa)

5.17

Isoelectric Point (pI)

57.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 102
AccIII TCCGGA 1 cut(s) 543
AclWI GGATC 3 cut(s) 21, 242, 554
AcoI YGGCCR 1 cut(s) 174
AcsI RAATTY 1 cut(s) 294
AcuI CTGAAG 2 cut(s) 599, 672
AfaI GTAC 1 cut(s) 116
AfiI CCNNNNNNNGG 2 cut(s) 257, 298
AgsI TTSAA 2 cut(s) 308, 569
AjnI CCWGG 1 cut(s) 604
AloI GAACNNNNNNTCC 2 cut(s) 577, 609
AluBI AGCT 3 cut(s) 26, 206, 364
AluI AGCT 3 cut(s) 26, 206, 364
Alw21I GWGCWC 1 cut(s) 604
Alw26I GTCTC 2 cut(s) 71, 287
Alw44I GTGCAC 1 cut(s) 600
AlwI GGATC 3 cut(s) 21, 242, 554
AlwNI CAGNNNCTG 1 cut(s) 209
Aor13HI TCCGGA 1 cut(s) 543
AoxI GGCC 3 cut(s) 90, 174, 669
ApaLI GTGCAC 1 cut(s) 600
ApeKI GCWGC 8 cut(s) 23, 55, 182, 203, 206, 403, 656, 659
ApoI RAATTY 1 cut(s) 294
Asp700I GAANNNNTTC 1 cut(s) 216
AspS9I GGNCC 1 cut(s) 91
AsuHPI GGTGA 1 cut(s) 423
BaeGI GKGCMC 1 cut(s) 604
BalI TGGCCA 1 cut(s) 176
BbsI GAAGAC 1 cut(s) 402
Bbv12I GWGCWC 1 cut(s) 604
BbvI GCAGC 8 cut(s) 35, 67, 169, 193, 215, 415, 643, 646
BccI CCATC 3 cut(s) 42, 362, 614
BciT130I CCWGG 1 cut(s) 606
BciVI GTATCC 1 cut(s) 485
BclI TGATCA 2 cut(s) 190, 409
BcoDI GTCTC 2 cut(s) 71, 287
BfaI CTAG 3 cut(s) 338, 597, 651
BfuAI ACCTGC 1 cut(s) 102
BfuI GTATCC 1 cut(s) 485
BglI GCCNNNNNGGC 1 cut(s) 668
BglII AGATCT 1 cut(s) 141
BisI GCNGC 8 cut(s) 24, 56, 183, 204, 207, 404, 657, 660
BlsI GCNGC 8 cut(s) 25, 57, 184, 205, 208, 405, 658, 661
Bme1390I CCNGG 1 cut(s) 606
BmgT120I GGNCC 1 cut(s) 91
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 1 cut(s) 606
BmsI GCATC 1 cut(s) 508
BpiI GAAGAC 1 cut(s) 402
BsaI GGTCTC 2 cut(s) 71, 287
BsaJI CCNNGG 2 cut(s) 177, 666
BsaWI WCCGGW 1 cut(s) 543
BsaXI ACNNNNNCTCC 2 cut(s) 55, 85
Bsc4I CCNNNNNNNGG 2 cut(s) 257, 298
Bse1I ACTGG 2 cut(s) 506, 557
BseAI TCCGGA 1 cut(s) 543
BseBI CCWGG 1 cut(s) 606
BseDI CCNNGG 2 cut(s) 177, 666
BseGI GGATG 3 cut(s) 34, 159, 540
BseLI CCNNNNNNNGG 2 cut(s) 257, 298
BseMII CTCAG 1 cut(s) 459
BseNI ACTGG 2 cut(s) 506, 557
BseRI GAGGAG 1 cut(s) 76
BseSI GKGCMC 1 cut(s) 604
BseXI GCAGC 8 cut(s) 35, 67, 169, 193, 215, 415, 643, 646
BsgI GTGCAG 2 cut(s) 42, 168
BshFI GGCC 3 cut(s) 92, 176, 671
BsiHKAI GWGCWC 1 cut(s) 604
BsiSI CCGG 1 cut(s) 544
BslFI GGGAC 1 cut(s) 315
BslI CCNNNNNNNGG 2 cut(s) 257, 298
BsmAI GTCTC 2 cut(s) 71, 287
BsmFI GGGAC 1 cut(s) 315
BsmI GAATGC 3 cut(s) 216, 238, 592
BsnI GGCC 3 cut(s) 92, 176, 671
Bso31I GGTCTC 2 cut(s) 71, 287
Bsp1286I GDGCHC 1 cut(s) 604
Bsp13I TCCGGA 1 cut(s) 543
Bsp143I GATC 9 cut(s) 13, 141, 168, 190, 247, 409, 421, 445, 546
Bsp19I CCATGG 1 cut(s) 177
BspANI GGCC 3 cut(s) 92, 176, 671
BspCNI CTCAG 1 cut(s) 460
BspEI TCCGGA 1 cut(s) 543
BspLI GGNNCC 1 cut(s) 93
BspMI ACCTGC 1 cut(s) 102
BspPI GGATC 3 cut(s) 21, 242, 554
BspQI GCTCTTC 1 cut(s) 354
BspTNI GGTCTC 2 cut(s) 71, 287
BsrI ACTGG 2 cut(s) 506, 557
BssECI CCNNGG 2 cut(s) 177, 666
BssMI GATC 9 cut(s) 13, 141, 168, 190, 247, 409, 421, 445, 546
BssT1I CCWWGG 2 cut(s) 177, 666
Bst2UI CCWGG 1 cut(s) 606
Bst4CI ACNGT 1 cut(s) 119
Bst6I CTCTTC 2 cut(s) 354, 519
BstC8I GCNNGC 2 cut(s) 53, 109
BstDEI CTNAG 1 cut(s) 468
BstDSI CCRYGG 1 cut(s) 177
BstF5I GGATG 3 cut(s) 34, 159, 540
BstKTI GATC 9 cut(s) 16, 144, 171, 193, 250, 412, 424, 448, 549
BstMAI GTCTC 2 cut(s) 71, 287
BstMBI GATC 9 cut(s) 13, 141, 168, 190, 247, 409, 421, 445, 546
BstMWI GCNNNNNNNGC 3 cut(s) 182, 656, 668
BstNI CCWGG 1 cut(s) 606
BstSCI CCNGG 1 cut(s) 604
BstSLI GKGCMC 1 cut(s) 604
BstV1I GCAGC 8 cut(s) 35, 67, 169, 193, 215, 415, 643, 646
BstV2I GAAGAC 1 cut(s) 402
BstX2I RGATCY 1 cut(s) 141
BstYI RGATCY 1 cut(s) 141
BsuI GTATCC 1 cut(s) 485
BsuRI GGCC 3 cut(s) 92, 176, 671
BtgI CCRYGG 1 cut(s) 177
BtsCI GGATG 3 cut(s) 34, 159, 540
BtsIMutI CAGTG 1 cut(s) 124
BveI ACCTGC 1 cut(s) 102
Cac8I GCNNGC 2 cut(s) 53, 109
CaiI CAGNNNCTG 1 cut(s) 209
Cfr13I GGNCC 1 cut(s) 91
Csp6I GTAC 1 cut(s) 115
CviAII CATG 4 cut(s) 172, 178, 407, 458
CviJI RGCY 9 cut(s) 26, 92, 107, 176, 182, 206, 364, 671, 725
CviKI_1 RGCY 9 cut(s) 26, 92, 107, 176, 182, 206, 364, 671, 725
CviQI GTAC 1 cut(s) 115
DdeI CTNAG 1 cut(s) 468
DpnI GATC 9 cut(s) 15, 143, 170, 192, 249, 411, 423, 447, 548
DpnII GATC 9 cut(s) 13, 141, 168, 190, 247, 409, 421, 445, 546
EaeI YGGCCR 1 cut(s) 174
Eam1104I CTCTTC 2 cut(s) 354, 519
EarI CTCTTC 2 cut(s) 354, 519
Eco130I CCWWGG 2 cut(s) 177, 666
Eco31I GGTCTC 2 cut(s) 71, 287
Eco57I CTGAAG 2 cut(s) 599, 672
EcoRII CCWGG 1 cut(s) 604
EcoT14I CCWWGG 2 cut(s) 177, 666
ErhI CCWWGG 2 cut(s) 177, 666
FaeI CATG 4 cut(s) 175, 181, 410, 461
FaqI GGGAC 1 cut(s) 315
FatI CATG 4 cut(s) 171, 177, 406, 457
FbaI TGATCA 2 cut(s) 190, 409
Fnu4HI GCNGC 8 cut(s) 24, 56, 183, 204, 207, 404, 657, 660
FokI GGATG 3 cut(s) 21, 146, 527
Fsp4HI GCNGC 8 cut(s) 24, 56, 183, 204, 207, 404, 657, 660
FspBI CTAG 3 cut(s) 338, 597, 651
GluI GCNGC 8 cut(s) 24, 56, 183, 204, 207, 404, 657, 660
HaeIII GGCC 3 cut(s) 92, 176, 671
HapII CCGG 1 cut(s) 544
Hin1II CATG 4 cut(s) 175, 181, 410, 461
HincII GTYRAC 1 cut(s) 507
HindII GTYRAC 1 cut(s) 507
HinfI GANTC 1 cut(s) 569
HpaII CCGG 1 cut(s) 544
HphI GGTGA 1 cut(s) 423
Hpy166II GTNNAC 2 cut(s) 507, 602
Hpy188I TCNGA 4 cut(s) 278, 418, 579, 691
Hpy188III TCNNGA 2 cut(s) 443, 544
Hpy8I GTNNAC 2 cut(s) 507, 602
HpyAV CCTTC 7 cut(s) 221, 349, 449, 523, 574, 632, 696
HpyCH4III ACNGT 1 cut(s) 119
HpyCH4V TGCA 9 cut(s) 23, 51, 185, 236, 348, 403, 521, 590, 602
HpyF10VI GCNNNNNNNGC 3 cut(s) 182, 656, 668
HpyF3I CTNAG 1 cut(s) 468
Hsp92II CATG 4 cut(s) 175, 181, 410, 461
Kpn2I TCCGGA 1 cut(s) 543
Ksp22I TGATCA 2 cut(s) 190, 409
Kzo9I GATC 9 cut(s) 13, 141, 168, 190, 247, 409, 421, 445, 546
LguI GCTCTTC 1 cut(s) 354
Lsp1109I GCAGC 8 cut(s) 35, 67, 169, 193, 215, 415, 643, 646
LweI GCATC 1 cut(s) 508
MaeI CTAG 3 cut(s) 338, 597, 651
MalI GATC 9 cut(s) 15, 143, 170, 192, 249, 411, 423, 447, 548
MboI GATC 9 cut(s) 13, 141, 168, 190, 247, 409, 421, 445, 546
MboII GAAGA 6 cut(s) 371, 404, 407, 527, 536, 728
MflI RGATCY 1 cut(s) 141
MhlI GDGCHC 1 cut(s) 604
MlsI TGGCCA 1 cut(s) 176
MluCI AATT 4 cut(s) 286, 294, 427, 496
MluNI TGGCCA 1 cut(s) 176
MnlI CCTC 5 cut(s) 54, 272, 463, 628, 673
Mox20I TGGCCA 1 cut(s) 176
MroI TCCGGA 1 cut(s) 543
MroXI GAANNNNTTC 1 cut(s) 216
MscI TGGCCA 1 cut(s) 176
MslI CAYNNNNRTG 2 cut(s) 39, 176
Msp20I TGGCCA 1 cut(s) 176
MspA1I CMGCKG 1 cut(s) 206
MspI CCGG 1 cut(s) 544
MspR9I CCNGG 1 cut(s) 606
Mva1269I GAATGC 3 cut(s) 216, 238, 592
MvaI CCWGG 1 cut(s) 606
MwoI GCNNNNNNNGC 3 cut(s) 182, 656, 668
NcoI CCATGG 1 cut(s) 177
NdeII GATC 9 cut(s) 13, 141, 168, 190, 247, 409, 421, 445, 546
NlaIII CATG 4 cut(s) 175, 181, 410, 461
NlaIV GGNNCC 1 cut(s) 93
PciSI GCTCTTC 1 cut(s) 354
PctI GAATGC 3 cut(s) 216, 238, 592
PdmI GAANNNNTTC 1 cut(s) 216
PfeI GAWTC 1 cut(s) 569
PkrI GCNGC 8 cut(s) 25, 57, 184, 205, 208, 405, 658, 661
Psp6I CCWGG 1 cut(s) 604
PspGI CCWGG 1 cut(s) 604
PspN4I GGNNCC 1 cut(s) 93
PspPI GGNCC 1 cut(s) 91
PsrI GAACNNNNNNTAC 2 cut(s) 107, 139
PstNI CAGNNNCTG 1 cut(s) 209
PsuI RGATCY 1 cut(s) 141
PvuII CAGCTG 1 cut(s) 206
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
RseI CAYNNNNRTG 2 cut(s) 39, 176
SapI GCTCTTC 1 cut(s) 354
SatI GCNGC 8 cut(s) 24, 56, 183, 204, 207, 404, 657, 660
Sau3AI GATC 9 cut(s) 13, 141, 168, 190, 247, 409, 421, 445, 546
Sau96I GGNCC 1 cut(s) 91
ScrFI CCNGG 1 cut(s) 606
SduI GDGCHC 1 cut(s) 604
SfaNI GCATC 1 cut(s) 508
SmiMI CAYNNNNRTG 2 cut(s) 39, 176
Sse9I AATT 4 cut(s) 286, 294, 427, 496
SspMI CTAG 3 cut(s) 338, 597, 651
StyD4I CCNGG 1 cut(s) 604
StyI CCWWGG 2 cut(s) 177, 666
TaaI ACNGT 1 cut(s) 119
TasI AATT 4 cut(s) 286, 294, 427, 496
TfiI GAWTC 1 cut(s) 569
TscAI CASTG 1 cut(s) 124
TseI GCWGC 8 cut(s) 23, 55, 182, 203, 206, 403, 656, 659
TspDTI ATGAA 2 cut(s) 341, 498
TspGWI ACGGA 1 cut(s) 239
TspRI CASTG 1 cut(s) 124
VneI GTGCAC 1 cut(s) 600
XapI RAATTY 1 cut(s) 294
XmnI GAANNNNTTC 1 cut(s) 216
XspI CTAG 3 cut(s) 338, 597, 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.