Rroxscaffold_2G00148070

lob domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0011216
Physical Location & Seq
Forward (+)
85723387 .. 85724475
1089 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00148070.1

Sequence Viewer

Length: 696 bp
ATGGATAGGGAGAGTTCACCATCACCTCTAAATCAAGCTTGTGCTTCTTGCAAGCACCAGAGAAAGAAATGTGACTCCAACTGTGAATTGGCTCCATACTTTCCGGCGAACAAGTACCATGAGTTTCAGAACGCTCACAAACTTTTTGGCGTGAGCAACATACTGAGGATCATAGCCTCGATTGAACCACATAAAAGAAAAGCTGCTGCTGAATCCATACTCTTTGAAGGGAACGCTTGGAAGAGTGATCCTGTGCATGGTTGCCTTGGTGTGATCAAAGATCTGACAGCCCAGCTGTCGTTTCATGAAAAACAACTCAGTATTGTGAATCAACACCTAGCATTTCATAAGGAGCAGCAAAAGAAAAAGCAAGAACAAGATCAATCTGATTATCTCAATGATGGGCTTCCTGATGTACCCGAGGAACTAATGGAAGACATGAAAATTTTTGAACATGGACACAATTACTGGTCAAATTTGGTCGGAGCAGATGAGGAGAAGCCCTTTGACATGGAGCTCACACAAGCATTTGATAAGCAAGGGAATCCCCTTACATATTTCAATGGACAAGCTGGAGAATCCAGTTCTGCTGCCCCAAAGGCCGAACAATGCTTGGAGTCTGTGAAGAAAGAAAAAACTGAAGATGAGGCTGGAATACCATCAACAACACACAAGAGAGACGCACATCAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

231

Amino Acids

26.09

Weight (kDa)

5.64

Isoelectric Point (pI)

58.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 13 - 110 2.4e-34 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 176, 242
AcsI RAATTY 2 cut(s) 444, 475
AcuI CTGAAG 1 cut(s) 660
AfaI GTAC 2 cut(s) 116, 417
AfiI CCNNNNNNNGG 1 cut(s) 257
AgsI TTSAA 4 cut(s) 185, 227, 452, 562
AluBI AGCT 5 cut(s) 38, 203, 295, 517, 572
AluI AGCT 5 cut(s) 38, 203, 295, 517, 572
Alw21I GWGCWC 1 cut(s) 519
Alw26I GTCTC 1 cut(s) 672
AlwI GGATC 2 cut(s) 176, 242
Ama87I CYCGRG 1 cut(s) 419
AoxI GGCC 1 cut(s) 600
ApeKI GCWGC 4 cut(s) 203, 206, 355, 590
ApoI RAATTY 2 cut(s) 444, 475
AsuHPI GGTGA 2 cut(s) 9, 15
AvaI CYCGRG 1 cut(s) 419
BanII GRGCYC 1 cut(s) 519
BbsI GAAGAC 1 cut(s) 441
Bbv12I GWGCWC 1 cut(s) 519
BbvI GCAGC 4 cut(s) 190, 193, 367, 577
BccI CCATC 3 cut(s) 28, 395, 667
BclI TGATCA 1 cut(s) 273
BcoDI GTCTC 1 cut(s) 672
BfaI CTAG 1 cut(s) 338
BglI GCCNNNNNGGC 1 cut(s) 599
BglII AGATCT 1 cut(s) 280
BisI GCNGC 4 cut(s) 204, 207, 356, 591
BlsI GCNGC 4 cut(s) 205, 208, 357, 592
BmeT110I CYCGRG 1 cut(s) 419
BmiI GGNNCC 1 cut(s) 93
BpiI GAAGAC 1 cut(s) 441
BpmI CTGGAG 1 cut(s) 594
BsaJI CCNNGG 2 cut(s) 265, 420
Bsc4I CCNNNNNNNGG 1 cut(s) 257
Bse1I ACTGG 2 cut(s) 473, 582
BseDI CCNNGG 2 cut(s) 265, 420
BseLI CCNNNNNNNGG 1 cut(s) 257
BseMII CTCAG 2 cut(s) 155, 331
BseNI ACTGG 2 cut(s) 473, 582
BseRI GAGGAG 1 cut(s) 509
BseXI GCAGC 4 cut(s) 190, 193, 367, 577
BseYI CCCAGC 1 cut(s) 291
BshFI GGCC 1 cut(s) 602
BsiHKAI GWGCWC 1 cut(s) 519
BsiHKCI CYCGRG 1 cut(s) 419
BsiSI CCGG 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 257
BsmAI GTCTC 1 cut(s) 672
BsmBI CGTCTC 1 cut(s) 672
BsnI GGCC 1 cut(s) 602
BsoBI CYCGRG 1 cut(s) 419
Bsp1286I GDGCHC 1 cut(s) 519
Bsp143I GATC 5 cut(s) 168, 247, 273, 280, 379
BspANI GGCC 1 cut(s) 602
BspCNI CTCAG 2 cut(s) 156, 330
BspHI TCATGA 1 cut(s) 304
BspLI GGNNCC 1 cut(s) 93
BspPI GGATC 2 cut(s) 176, 242
BsrI ACTGG 2 cut(s) 473, 582
BssECI CCNNGG 2 cut(s) 265, 420
BssMI GATC 5 cut(s) 168, 247, 273, 280, 379
BssT1I CCWWGG 1 cut(s) 265
Bst4CI ACNGT 1 cut(s) 83
Bst6I CTCTTC 1 cut(s) 236
BstC8I GCNNGC 1 cut(s) 53
BstDEI CTNAG 2 cut(s) 164, 317
BstKTI GATC 5 cut(s) 171, 250, 276, 283, 382
BstMAI GTCTC 1 cut(s) 672
BstMBI GATC 5 cut(s) 168, 247, 273, 280, 379
BstMWI GCNNNNNNNGC 1 cut(s) 599
BstV1I GCAGC 4 cut(s) 190, 193, 367, 577
BstV2I GAAGAC 1 cut(s) 441
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
BsuRI GGCC 1 cut(s) 602
Cac8I GCNNGC 1 cut(s) 53
CciI TCATGA 1 cut(s) 304
CseI GACGC 1 cut(s) 689
Csp6I GTAC 2 cut(s) 115, 416
CviAII CATG 6 cut(s) 119, 257, 305, 439, 455, 511
CviQI GTAC 2 cut(s) 115, 416
DdeI CTNAG 2 cut(s) 164, 317
DpnI GATC 5 cut(s) 170, 249, 275, 282, 381
DpnII GATC 5 cut(s) 168, 247, 273, 280, 379
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
Ecl136II GAGCTC 1 cut(s) 517
Eco130I CCWWGG 1 cut(s) 265
Eco24I GRGCYC 1 cut(s) 519
Eco53kI GAGCTC 1 cut(s) 517
Eco57I CTGAAG 1 cut(s) 660
Eco88I CYCGRG 1 cut(s) 419
EcoICRI GAGCTC 1 cut(s) 517
EcoT14I CCWWGG 1 cut(s) 265
EcoT38I GRGCYC 1 cut(s) 519
ErhI CCWWGG 1 cut(s) 265
Esp3I CGTCTC 1 cut(s) 672
FaeI CATG 6 cut(s) 122, 260, 308, 442, 458, 514
FatI CATG 6 cut(s) 118, 256, 304, 438, 454, 510
FbaI TGATCA 1 cut(s) 273
Fnu4HI GCNGC 4 cut(s) 204, 207, 356, 591
FriOI GRGCYC 1 cut(s) 519
Fsp4HI GCNGC 4 cut(s) 204, 207, 356, 591
FspBI CTAG 1 cut(s) 338
GluI GCNGC 4 cut(s) 204, 207, 356, 591
GsaI CCCAGC 1 cut(s) 295
GsuI CTGGAG 1 cut(s) 594
HaeIII GGCC 1 cut(s) 602
HapII CCGG 1 cut(s) 104
HgaI GACGC 1 cut(s) 689
Hin1II CATG 6 cut(s) 122, 260, 308, 442, 458, 514
HindIII AAGCTT 1 cut(s) 36
HinfI GANTC 6 cut(s) 74, 212, 328, 544, 578, 617
HpaII CCGG 1 cut(s) 104
HphI GGTGA 2 cut(s) 9, 15
Hpy166II GTNNAC 1 cut(s) 17
Hpy188I TCNGA 4 cut(s) 129, 285, 388, 485
Hpy188III TCNNGA 3 cut(s) 305, 410, 689
Hpy8I GTNNAC 1 cut(s) 17
HpyAV CCTTC 1 cut(s) 221
HpyCH4III ACNGT 1 cut(s) 83
HpyCH4V TGCA 2 cut(s) 51, 256
HpyF10VI GCNNNNNNNGC 1 cut(s) 599
HpyF3I CTNAG 2 cut(s) 164, 317
Hsp92II CATG 6 cut(s) 122, 260, 308, 442, 458, 514
Ksp22I TGATCA 1 cut(s) 273
Kzo9I GATC 5 cut(s) 168, 247, 273, 280, 379
LmnI GCTCC 4 cut(s) 97, 352, 485, 514
LpnPI CCDG 9 cut(s) 71, 117, 264, 305, 423, 454, 558, 595, 636
Lsp1109I GCAGC 4 cut(s) 190, 193, 367, 577
MaeI CTAG 1 cut(s) 338
MaeIII GTNAC 1 cut(s) 71
MalI GATC 5 cut(s) 170, 249, 275, 282, 381
MboI GATC 5 cut(s) 168, 247, 273, 280, 379
MboII GAAGA 4 cut(s) 253, 446, 637, 653
MflI RGATCY 1 cut(s) 280
MhlI GDGCHC 1 cut(s) 519
MluCI AATT 4 cut(s) 86, 444, 463, 475
MlyI GAGTC 2 cut(s) 68, 626
MmeI TCCRAC 2 cut(s) 102, 463
MnlI CCTC 6 cut(s) 36, 159, 187, 415, 487, 640
MspA1I CMGCKG 1 cut(s) 295
MspI CCGG 1 cut(s) 104
MwoI GCNNNNNNNGC 1 cut(s) 599
NdeII GATC 5 cut(s) 168, 247, 273, 280, 379
NlaIII CATG 6 cut(s) 122, 260, 308, 442, 458, 514
NlaIV GGNNCC 1 cut(s) 93
NmuCI GTSAC 1 cut(s) 71
PagI TCATGA 1 cut(s) 304
PfeI GAWTC 4 cut(s) 212, 328, 544, 578
PkrI GCNGC 4 cut(s) 205, 208, 357, 592
PleI GAGTC 2 cut(s) 68, 625
PpsI GAGTC 2 cut(s) 68, 625
Psp124BI GAGCTC 1 cut(s) 519
PspFI CCCAGC 1 cut(s) 291
PspN4I GGNNCC 1 cut(s) 93
PsuI RGATCY 1 cut(s) 280
PvuII CAGCTG 1 cut(s) 295
RsaI GTAC 2 cut(s) 116, 417
RsaNI GTAC 2 cut(s) 115, 416
SacI GAGCTC 1 cut(s) 519
SatI GCNGC 4 cut(s) 204, 207, 356, 591
Sau3AI GATC 5 cut(s) 168, 247, 273, 280, 379
SchI GAGTC 2 cut(s) 68, 626
SduI GDGCHC 1 cut(s) 519
SetI ASST 7 cut(s) 28, 40, 205, 297, 339, 519, 574
Sse9I AATT 4 cut(s) 86, 444, 463, 475
SspMI CTAG 1 cut(s) 338
SstI GAGCTC 1 cut(s) 519
StyI CCWWGG 1 cut(s) 265
TaaI ACNGT 1 cut(s) 83
TaqI TCGA 1 cut(s) 179
TasI AATT 4 cut(s) 86, 444, 463, 475
TfiI GAWTC 4 cut(s) 212, 328, 544, 578
TseFI GTSAC 1 cut(s) 71
TseI GCWGC 4 cut(s) 203, 206, 355, 590
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 4 cut(s) 293, 321, 335, 455
XapI RAATTY 2 cut(s) 444, 475
XcmI CCANNNNNNNNNTGG 1 cut(s) 85
XspI CTAG 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.