Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0011216

Physical Location & Seq

Genomic Coordinates Reverse (-)

7051299 .. 7053353

Gene Structure 2055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG085600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGATAGGGAGAGTTCACCATCACCTCTAAATCAAGCTTGTGCTTCTTGCAAGCACCAGAGAAAGAAATGTGACTCCAACTGTGAATTGGCTCCATACTTTCCGGCGAACAAGTACCATGAGTTTCAGAACGCTCACAAACTTTTTGGCGTGAGCAACATACTGAAGATCATAGCCTCGATTGAACCACATAAAAGAAAAGCTGCTGCTGAATCCATACTCTTTGAAGGGAACGCTTGGAAGAGTGATCCTGTGCATGGTTGCCTTGGTGTGATCAAAGATCTGACAGCCCAGATGTCGTTTCATGAAAAACAACTCAGTGTTGTGAATCAACACCTAGCATTTCATAAGGAGCAGCAAAAGAAAAAGCAAGAACAAGATCAATCTGATTTTCTCAATGATGAGCTTCCTGATCTACCCGATGAACTAATGGAAGACATGAAAATTTTTGAACATGGACACAATTACTGGTCAAATTTGGTCGGAGCAGATGAGGAGAAGCCCTTTGACATGGAGCACACAGAAGCATTTGATGAGCAAGTAAATCCCCTTACATATTTCAATGGACAAGCTGGAGAATGCAGTACTGCTGCCCCAAAGGCCGAACAATGCTTGGAGTCTGTGAAGAAAGAAAAAACTGAAGATGAGGCCATATCATCCACAACACACAAGACAGACGCACATCAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

230

Amino Acids

26.1

Weight (kDa)

5.29

Isoelectric Point (pI)

56.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	13 - 110	9.9e-35	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36000 AT2G19510 AT2G19820
fragaria_vesca	FvH4_1g07590
malus_domestica	MD15G1207900.v1.1 MD15G1208000.v1.1
prunus_persica	Prupe.3G071200_v2.0.a1 Prupe.7G145700_v2.0.a1 Prupe.7G208700_v2.0.a1 Prupe.7G209000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0093461
rosa_laevigata	RLG00000016408
rosa_multiflora	Rmu_sc0004086.1_g000003
rosa_roxburghii	Rroxscaffold_2G00148070
rosa_rugosa	Rorug02G0036600
rosa_samantha	Rh2AG082900 Rh2BG083600 Rh2CG085600 Rh2DG081700
rosa_wichuraiana	Rw2G006450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	242
AcsI	RAATTY	2 cut(s)	444, 475
AcuI	CTGAAG	2 cut(s)	185, 660
AfaI	GTAC	2 cut(s)	116, 586
AfiI	CCNNNNNNNGG	1 cut(s)	257
AgsI	TTSAA	4 cut(s)	185, 227, 452, 562
AluBI	AGCT	4 cut(s)	38, 203, 406, 572
AluI	AGCT	4 cut(s)	38, 203, 406, 572
Alw21I	GWGCWC	1 cut(s)	519
AlwI	GGATC	1 cut(s)	242
AoxI	GGCC	2 cut(s)	600, 648
ApeKI	GCWGC	4 cut(s)	203, 206, 355, 590
ApoI	RAATTY	2 cut(s)	444, 475
AsuHPI	GGTGA	2 cut(s)	9, 15
BbsI	GAAGAC	1 cut(s)	441
Bbv12I	GWGCWC	1 cut(s)	519
BbvI	GCAGC	4 cut(s)	190, 193, 367, 577
BccI	CCATC	1 cut(s)	28
BclI	TGATCA	1 cut(s)	273
BfaI	CTAG	1 cut(s)	338
BglI	GCCNNNNNGGC	1 cut(s)	599
BglII	AGATCT	1 cut(s)	280
BisI	GCNGC	4 cut(s)	204, 207, 356, 591
BlsI	GCNGC	4 cut(s)	205, 208, 357, 592
BmcAI	AGTACT	1 cut(s)	586
BmiI	GGNNCC	1 cut(s)	93
BpiI	GAAGAC	1 cut(s)	441
BpmI	CTGGAG	1 cut(s)	594
BsaJI	CCNNGG	1 cut(s)	265
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
Bse1I	ACTGG	1 cut(s)	473
BseDI	CCNNGG	1 cut(s)	265
BseGI	GGATG	1 cut(s)	656
BseLI	CCNNNNNNNGG	1 cut(s)	257
BseMII	CTCAG	1 cut(s)	331
BseNI	ACTGG	1 cut(s)	473
BseRI	GAGGAG	1 cut(s)	509
BseXI	GCAGC	4 cut(s)	190, 193, 367, 577
BshFI	GGCC	2 cut(s)	602, 650
BsiHKAI	GWGCWC	1 cut(s)	519
BsiSI	CCGG	1 cut(s)	104
BslI	CCNNNNNNNGG	1 cut(s)	257
BsmI	GAATGC	1 cut(s)	584
BsnI	GGCC	2 cut(s)	602, 650
Bsp1286I	GDGCHC	1 cut(s)	519
Bsp143I	GATC	6 cut(s)	168, 247, 273, 280, 379, 412
BspANI	GGCC	2 cut(s)	602, 650
BspCNI	CTCAG	1 cut(s)	330
BspHI	TCATGA	1 cut(s)	304
BspLI	GGNNCC	1 cut(s)	93
BspPI	GGATC	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	473
BssECI	CCNNGG	1 cut(s)	265
BssMI	GATC	6 cut(s)	168, 247, 273, 280, 379, 412
BssT1I	CCWWGG	1 cut(s)	265
Bst4CI	ACNGT	1 cut(s)	83
Bst6I	CTCTTC	1 cut(s)	236
BstC8I	GCNNGC	1 cut(s)	53
BstDEI	CTNAG	1 cut(s)	317
BstF5I	GGATG	1 cut(s)	656
BstKTI	GATC	6 cut(s)	171, 250, 276, 283, 382, 415
BstMBI	GATC	6 cut(s)	168, 247, 273, 280, 379, 412
BstMWI	GCNNNNNNNGC	1 cut(s)	599
BstV1I	GCAGC	4 cut(s)	190, 193, 367, 577
BstV2I	GAAGAC	1 cut(s)	441
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BsuRI	GGCC	2 cut(s)	602, 650
BtsCI	GGATG	1 cut(s)	656
BtsIMutI	CAGTG	1 cut(s)	325
Cac8I	GCNNGC	1 cut(s)	53
CciI	TCATGA	1 cut(s)	304
CseI	GACGC	1 cut(s)	686
Csp6I	GTAC	2 cut(s)	115, 585
CviAII	CATG	6 cut(s)	119, 257, 305, 439, 455, 511
CviQI	GTAC	2 cut(s)	115, 585
DdeI	CTNAG	1 cut(s)	317
DpnI	GATC	6 cut(s)	170, 249, 275, 282, 381, 414
DpnII	GATC	6 cut(s)	168, 247, 273, 280, 379, 412
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
Eco130I	CCWWGG	1 cut(s)	265
Eco57I	CTGAAG	2 cut(s)	185, 660
EcoT14I	CCWWGG	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	265
FaeI	CATG	6 cut(s)	122, 260, 308, 442, 458, 514
FatI	CATG	6 cut(s)	118, 256, 304, 438, 454, 510
FbaI	TGATCA	1 cut(s)	273
Fnu4HI	GCNGC	4 cut(s)	204, 207, 356, 591
FokI	GGATG	1 cut(s)	643
Fsp4HI	GCNGC	4 cut(s)	204, 207, 356, 591
FspBI	CTAG	1 cut(s)	338
GluI	GCNGC	4 cut(s)	204, 207, 356, 591
GsuI	CTGGAG	1 cut(s)	594
HaeIII	GGCC	2 cut(s)	602, 650
HapII	CCGG	1 cut(s)	104
HgaI	GACGC	1 cut(s)	686
Hin1II	CATG	6 cut(s)	122, 260, 308, 442, 458, 514
HindIII	AAGCTT	1 cut(s)	36
HinfI	GANTC	4 cut(s)	74, 212, 328, 617
HpaII	CCGG	1 cut(s)	104
HphI	GGTGA	2 cut(s)	9, 15
Hpy166II	GTNNAC	1 cut(s)	17
Hpy188I	TCNGA	4 cut(s)	129, 285, 388, 485
Hpy188III	TCNNGA	3 cut(s)	305, 410, 686
Hpy8I	GTNNAC	1 cut(s)	17
HpyAV	CCTTC	1 cut(s)	221
HpyCH4III	ACNGT	1 cut(s)	83
HpyCH4V	TGCA	3 cut(s)	51, 256, 582
HpyF10VI	GCNNNNNNNGC	1 cut(s)	599
HpyF3I	CTNAG	1 cut(s)	317
Hsp92II	CATG	6 cut(s)	122, 260, 308, 442, 458, 514
Ksp22I	TGATCA	1 cut(s)	273
Kzo9I	GATC	6 cut(s)	168, 247, 273, 280, 379, 412
LmnI	GCTCC	4 cut(s)	97, 352, 485, 514
LpnPI	CCDG	7 cut(s)	71, 117, 264, 305, 423, 454, 558
Lsp1109I	GCAGC	4 cut(s)	190, 193, 367, 577
MaeI	CTAG	1 cut(s)	338
MaeIII	GTNAC	1 cut(s)	71
MalI	GATC	6 cut(s)	170, 249, 275, 282, 381, 414
MboI	GATC	6 cut(s)	168, 247, 273, 280, 379, 412
MboII	GAAGA	5 cut(s)	178, 253, 446, 637, 653
MflI	RGATCY	1 cut(s)	280
MhlI	GDGCHC	1 cut(s)	519
MluCI	AATT	4 cut(s)	86, 444, 463, 475
MlyI	GAGTC	2 cut(s)	68, 626
MmeI	TCCRAC	2 cut(s)	102, 463
MnlI	CCTC	4 cut(s)	36, 187, 487, 640
MspI	CCGG	1 cut(s)	104
Mva1269I	GAATGC	1 cut(s)	584
MwoI	GCNNNNNNNGC	1 cut(s)	599
NdeII	GATC	6 cut(s)	168, 247, 273, 280, 379, 412
NlaIII	CATG	6 cut(s)	122, 260, 308, 442, 458, 514
NlaIV	GGNNCC	1 cut(s)	93
NmuCI	GTSAC	1 cut(s)	71
PagI	TCATGA	1 cut(s)	304
PctI	GAATGC	1 cut(s)	584
PfeI	GAWTC	2 cut(s)	212, 328
PkrI	GCNGC	4 cut(s)	205, 208, 357, 592
PleI	GAGTC	2 cut(s)	68, 625
PpsI	GAGTC	2 cut(s)	68, 625
PspN4I	GGNNCC	1 cut(s)	93
PsuI	RGATCY	1 cut(s)	280
RsaI	GTAC	2 cut(s)	116, 586
RsaNI	GTAC	2 cut(s)	115, 585
SatI	GCNGC	4 cut(s)	204, 207, 356, 591
Sau3AI	GATC	6 cut(s)	168, 247, 273, 280, 379, 412
ScaI	AGTACT	1 cut(s)	586
SchI	GAGTC	2 cut(s)	68, 626
SduI	GDGCHC	1 cut(s)	519
SetI	ASST	6 cut(s)	28, 40, 205, 339, 408, 574
Sse9I	AATT	4 cut(s)	86, 444, 463, 475
SspMI	CTAG	1 cut(s)	338
StyI	CCWWGG	1 cut(s)	265
TaaI	ACNGT	1 cut(s)	83
TaqI	TCGA	1 cut(s)	179
TasI	AATT	4 cut(s)	86, 444, 463, 475
TatI	WGTACW	1 cut(s)	584
TfiI	GAWTC	2 cut(s)	212, 328
TscAI	CASTG	1 cut(s)	325
TseFI	GTSAC	1 cut(s)	71
TseI	GCWGC	4 cut(s)	203, 206, 355, 590
Tsp45I	GTSAC	1 cut(s)	71
TspDTI	ATGAA	5 cut(s)	293, 321, 335, 438, 455
TspRI	CASTG	1 cut(s)	325
XapI	RAATTY	2 cut(s)	444, 475
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XspI	CTAG	1 cut(s)	338
ZrmI	AGTACT	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.