MD15G1208000.v1.1

lob domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0011216
Physical Location & Seq
Reverse (-)
16558613 .. 16558888
276 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1208000.v1.1.491

Sequence Viewer

Length: 276 bp
ATGGCAAATTCTAAAGCTTGTGCTGCCTGCAAATACCAAAGGAGAAAATGTACCCAAACCTGTGAGTTGGCCGCATACTTCCCGGCCAGCAGGTTTGTAGAGTTTGTAAATGCGCAGCATATGTTCGGTATGAGCAACATTGAAAAGATTCTGGCTACGGTGGAGCCGGATCAAAGACCAGCAGCGGCTGAGACTATACTCTTTGAAGGGAATATATGGAGGAATAATCCTTCTGTGGTTGCCTTGGTGTTACCAGATTCCTCCGCGAACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

92

Amino Acids

10.08

Weight (kDa)

8.43

Isoelectric Point (pI)

74.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 6 - 78 1.1e-24 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 114
Acc36I ACCTGC 1 cut(s) 81
AccII CGCG 1 cut(s) 266
AciI CCGC 3 cut(s) 72, 185, 264
AclWI GGATC 1 cut(s) 177
AcoI YGGCCR 2 cut(s) 69, 84
AcsI RAATTY 1 cut(s) 7
AfaI GTAC 1 cut(s) 52
AgsI TTSAA 2 cut(s) 143, 206
AluBI AGCT 1 cut(s) 17
AluI AGCT 1 cut(s) 17
Alw26I GTCTC 1 cut(s) 185
AlwI GGATC 1 cut(s) 177
AlwNI CAGNNNCTG 1 cut(s) 188
AoxI GGCC 2 cut(s) 69, 84
ApeKI GCWGC 3 cut(s) 23, 115, 182
ApoI RAATTY 1 cut(s) 7
Asp700I GAANNNNTTC 1 cut(s) 147
AspLEI GCGC 1 cut(s) 115
AsuC2I CCSGG 1 cut(s) 83
BbvI GCAGC 3 cut(s) 10, 127, 194
BcnI CCSGG 1 cut(s) 83
BcoDI GTCTC 1 cut(s) 185
BfuAI ACCTGC 1 cut(s) 81
BisI GCNGC 5 cut(s) 24, 72, 116, 183, 186
BlsI GCNGC 5 cut(s) 25, 73, 117, 184, 187
Bme1390I CCNGG 1 cut(s) 83
BmiI GGNNCC 1 cut(s) 165
BmrFI CCNGG 1 cut(s) 83
BpuMI CCSGG 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 243
BsaXI ACNNNNNCTCC 2 cut(s) 34, 64
BseDI CCNNGG 1 cut(s) 243
BseMII CTCAG 1 cut(s) 180
BseXI GCAGC 3 cut(s) 10, 127, 194
Bsh1236I CGCG 1 cut(s) 266
BshFI GGCC 2 cut(s) 71, 86
BsiSI CCGG 2 cut(s) 83, 167
BsmAI GTCTC 1 cut(s) 185
BsnI GGCC 2 cut(s) 71, 86
Bsp143I GATC 1 cut(s) 169
BspACI CCGC 3 cut(s) 72, 185, 264
BspANI GGCC 2 cut(s) 71, 86
BspCNI CTCAG 1 cut(s) 181
BspFNI CGCG 1 cut(s) 266
BspLI GGNNCC 1 cut(s) 165
BspMI ACCTGC 1 cut(s) 81
BspPI GGATC 1 cut(s) 177
BssECI CCNNGG 1 cut(s) 243
BssMI GATC 1 cut(s) 169
BssT1I CCWWGG 1 cut(s) 243
Bst4CI ACNGT 1 cut(s) 160
BstC8I GCNNGC 2 cut(s) 28, 88
BstDEI CTNAG 1 cut(s) 189
BstFNI CGCG 1 cut(s) 266
BstHHI GCGC 1 cut(s) 115
BstKTI GATC 1 cut(s) 172
BstMAI GTCTC 1 cut(s) 185
BstMBI GATC 1 cut(s) 169
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstSCI CCNGG 1 cut(s) 81
BstUI CGCG 1 cut(s) 266
BstV1I GCAGC 3 cut(s) 10, 127, 194
BsuRI GGCC 2 cut(s) 71, 86
BveI ACCTGC 1 cut(s) 81
Cac8I GCNNGC 2 cut(s) 28, 88
CaiI CAGNNNCTG 1 cut(s) 188
CfoI GCGC 1 cut(s) 115
Csp6I GTAC 1 cut(s) 51
CviJI RGCY 6 cut(s) 17, 71, 86, 155, 166, 188
CviKI_1 RGCY 6 cut(s) 17, 71, 86, 155, 166, 188
CviQI GTAC 1 cut(s) 51
DdeI CTNAG 1 cut(s) 189
DpnI GATC 1 cut(s) 171
DpnII GATC 1 cut(s) 169
EaeI YGGCCR 2 cut(s) 69, 84
Eco130I CCWWGG 1 cut(s) 243
EcoT14I CCWWGG 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 243
FaiI YATR 7 cut(s) 76, 120, 122, 131, 197, 215, 217
FauNDI CATATG 1 cut(s) 120
Fnu4HI GCNGC 5 cut(s) 24, 72, 116, 183, 186
Fsp4HI GCNGC 5 cut(s) 24, 72, 116, 183, 186
FspI TGCGCA 1 cut(s) 114
GlaI GCGC 1 cut(s) 114
GluI GCNGC 5 cut(s) 24, 72, 116, 183, 186
HaeIII GGCC 2 cut(s) 71, 86
HapII CCGG 2 cut(s) 83, 167
HhaI GCGC 1 cut(s) 115
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HindIII AAGCTT 1 cut(s) 15
HinfI GANTC 2 cut(s) 148, 257
HpaII CCGG 2 cut(s) 83, 167
HpyAV CCTTC 2 cut(s) 200, 240
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4V TGCA 1 cut(s) 30
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
HpyF3I CTNAG 1 cut(s) 189
HspAI GCGC 1 cut(s) 113
Kzo9I GATC 1 cut(s) 169
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 9 cut(s) 40, 73, 76, 96, 100, 137, 180, 192, 267
Lsp1109I GCAGC 3 cut(s) 10, 127, 194
MaeIII GTNAC 1 cut(s) 249
MalI GATC 1 cut(s) 171
MboI GATC 1 cut(s) 169
MluCI AATT 1 cut(s) 7
MnlI CCTC 2 cut(s) 213, 271
MroXI GAANNNNTTC 1 cut(s) 147
MspA1I CMGCKG 1 cut(s) 185
MspI CCGG 2 cut(s) 83, 167
MspR9I CCNGG 1 cut(s) 83
MvnI CGCG 1 cut(s) 266
MwoI GCNNNNNNNGC 1 cut(s) 23
NciI CCSGG 1 cut(s) 83
NdeI CATATG 1 cut(s) 120
NdeII GATC 1 cut(s) 169
NlaIV GGNNCC 1 cut(s) 165
NsbI TGCGCA 1 cut(s) 114
PdmI GAANNNNTTC 1 cut(s) 147
PfeI GAWTC 2 cut(s) 148, 257
PkrI GCNGC 5 cut(s) 25, 73, 117, 184, 187
PspN4I GGNNCC 1 cut(s) 165
PstNI CAGNNNCTG 1 cut(s) 188
RsaI GTAC 1 cut(s) 52
RsaNI GTAC 1 cut(s) 51
SatI GCNGC 5 cut(s) 24, 72, 116, 183, 186
Sau3AI GATC 1 cut(s) 169
ScrFI CCNGG 1 cut(s) 83
SetI ASST 3 cut(s) 19, 62, 95
Sse9I AATT 1 cut(s) 7
SsiI CCGC 3 cut(s) 72, 185, 264
StyD4I CCNGG 1 cut(s) 81
StyI CCWWGG 1 cut(s) 243
TaaI ACNGT 1 cut(s) 160
TasI AATT 1 cut(s) 7
TauI GCSGC 2 cut(s) 74, 188
TfiI GAWTC 2 cut(s) 148, 257
TseI GCWGC 3 cut(s) 23, 115, 182
XapI RAATTY 1 cut(s) 7
XmnI GAANNNNTTC 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.