Prupe.7G145700_v2.0.a1

lob domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0011216
Physical Location & Seq
Forward (+)
15900446 .. 15901215
770 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G145700.1

Sequence Viewer

Length: 651 bp
ATGGAAAATAGGGATCAGGTTGCAGCTCAAAACTATGCTTGTGCTTCCTGCAAGCATCAGAGGAGAAAATGTGACGAGACCTGTGAAATGGCCCCATACTTTCCAGCCAGCAGGTACAGTGAGTTCCAAAATGCTCAAAAGATCTTTGGTGTGAGCAACATCCAAAAGATCATGGCCATGGCTGCACCTGATCAAAGACAGGCAGCTGCTGAAAGCATTCTCACGGAAGGGAATGCAAGGAAAAATGATCCTGTGCATGGTTGTCTTGGCATTATCAGAGGTCTCAATGCCCAAATTCAGGGACTTGAAAGAGAACTCCATATTATGAAACAGCACCTAGAACTTTGCAAGGAGAAGGAAGAACTTGATGGGAAAAAAAACCAATCAAAAGAAGAAGACTTGCAGCATGATCAATCTGATGGTCTCAATTTCCCATCACCAATCCTCCCTGATCTGCCCTCTCATGTCACGGCTGAGATGAGAAAATATGAACAAGGATACAATTACTGGTCAATTTTGGAAGATGCAGAAGAGGAGGTCTTTGACATCCGGCTCATAGAACCAGTATTATTTGAATCCAATCTGAAGGGGAATGCAAGTTCTAGTGGATCAGGAAAATCCAGGTTGTGCAAAACTTTATACTTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

217

Amino Acids

24.47

Weight (kDa)

5.45

Isoelectric Point (pI)

57.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 102
AclWI GGATC 3 cut(s) 21, 242, 616
AcoI YGGCCR 1 cut(s) 174
AcsI RAATTY 1 cut(s) 294
AcuI CTGAAG 1 cut(s) 605
AfaI GTAC 1 cut(s) 116
AfiI CCNNNNNNNGG 2 cut(s) 257, 298
AgsI TTSAA 2 cut(s) 308, 575
AjnI CCWGG 1 cut(s) 620
AloI GAACNNNNNNTCC 2 cut(s) 583, 615
AluBI AGCT 2 cut(s) 26, 206
AluI AGCT 2 cut(s) 26, 206
Alw26I GTCTC 3 cut(s) 71, 287, 428
AlwI GGATC 3 cut(s) 21, 242, 616
AlwNI CAGNNNCTG 1 cut(s) 209
AoxI GGCC 2 cut(s) 90, 174
ApeKI GCWGC 5 cut(s) 23, 182, 203, 206, 403
ApoI RAATTY 1 cut(s) 294
Asp700I GAANNNNTTC 1 cut(s) 216
AspS9I GGNCC 1 cut(s) 91
AsuHPI GGTGA 1 cut(s) 429
BalI TGGCCA 1 cut(s) 176
BbsI GAAGAC 1 cut(s) 402
BbvI GCAGC 5 cut(s) 35, 169, 193, 215, 415
BccI CCATC 3 cut(s) 362, 413, 442
BceAI ACGGC 1 cut(s) 486
BciT130I CCWGG 1 cut(s) 622
BciVI GTATCC 1 cut(s) 491
BclI TGATCA 2 cut(s) 190, 409
BcoDI GTCTC 3 cut(s) 71, 287, 428
BfaI CTAG 2 cut(s) 338, 603
BfuAI ACCTGC 1 cut(s) 102
BfuI GTATCC 1 cut(s) 491
BglII AGATCT 1 cut(s) 141
BisI GCNGC 5 cut(s) 24, 183, 204, 207, 404
BlsI GCNGC 5 cut(s) 25, 184, 205, 208, 405
Bme1390I CCNGG 1 cut(s) 622
BmgT120I GGNCC 1 cut(s) 91
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 1 cut(s) 622
BmsI GCATC 2 cut(s) 64, 514
BpiI GAAGAC 1 cut(s) 402
BsaI GGTCTC 3 cut(s) 71, 287, 428
BsaJI CCNNGG 1 cut(s) 177
BsaXI ACNNNNNCTCC 4 cut(s) 55, 85, 429, 459
Bsc4I CCNNNNNNNGG 2 cut(s) 257, 298
Bse1I ACTGG 2 cut(s) 512, 563
BseBI CCWGG 1 cut(s) 622
BseDI CCNNGG 1 cut(s) 177
BseGI GGATG 2 cut(s) 159, 546
BseLI CCNNNNNNNGG 2 cut(s) 257, 298
BseMII CTCAG 1 cut(s) 465
BseNI ACTGG 2 cut(s) 512, 563
BseRI GAGGAG 2 cut(s) 76, 548
BseXI GCAGC 5 cut(s) 35, 169, 193, 215, 415
BsgI GTGCAG 1 cut(s) 168
BshFI GGCC 2 cut(s) 92, 176
BsiSI CCGG 1 cut(s) 550
BslFI GGGAC 1 cut(s) 315
BslI CCNNNNNNNGG 2 cut(s) 257, 298
BsmAI GTCTC 3 cut(s) 71, 287, 428
BsmFI GGGAC 1 cut(s) 315
BsmI GAATGC 3 cut(s) 216, 238, 598
BsnI GGCC 2 cut(s) 92, 176
Bso31I GGTCTC 3 cut(s) 71, 287, 428
Bsp143I GATC 8 cut(s) 13, 141, 168, 190, 247, 409, 451, 608
Bsp19I CCATGG 1 cut(s) 177
BspANI GGCC 2 cut(s) 92, 176
BspCNI CTCAG 1 cut(s) 466
BspLI GGNNCC 1 cut(s) 93
BspMI ACCTGC 1 cut(s) 102
BspPI GGATC 3 cut(s) 21, 242, 616
BspTNI GGTCTC 3 cut(s) 71, 287, 428
BsrI ACTGG 2 cut(s) 512, 563
BssECI CCNNGG 1 cut(s) 177
BssMI GATC 8 cut(s) 13, 141, 168, 190, 247, 409, 451, 608
BssT1I CCWWGG 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 622
Bst4CI ACNGT 1 cut(s) 119
Bst6I CTCTTC 1 cut(s) 525
BstC8I GCNNGC 2 cut(s) 53, 109
BstDEI CTNAG 1 cut(s) 474
BstDSI CCRYGG 1 cut(s) 177
BstF5I GGATG 2 cut(s) 159, 546
BstKTI GATC 8 cut(s) 16, 144, 171, 193, 250, 412, 454, 611
BstMAI GTCTC 3 cut(s) 71, 287, 428
BstMBI GATC 8 cut(s) 13, 141, 168, 190, 247, 409, 451, 608
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNI CCWGG 1 cut(s) 622
BstSCI CCNGG 1 cut(s) 620
BstV1I GCAGC 5 cut(s) 35, 169, 193, 215, 415
BstV2I GAAGAC 1 cut(s) 402
BstX2I RGATCY 1 cut(s) 141
BstYI RGATCY 1 cut(s) 141
BsuI GTATCC 1 cut(s) 491
BsuRI GGCC 2 cut(s) 92, 176
BtgI CCRYGG 1 cut(s) 177
BtsCI GGATG 2 cut(s) 159, 546
BtsIMutI CAGTG 1 cut(s) 124
BveI ACCTGC 1 cut(s) 102
Cac8I GCNNGC 2 cut(s) 53, 109
CaiI CAGNNNCTG 1 cut(s) 209
Cfr13I GGNCC 1 cut(s) 91
Csp6I GTAC 1 cut(s) 115
CviAII CATG 5 cut(s) 172, 178, 257, 407, 464
CviJI RGCY 8 cut(s) 26, 92, 107, 176, 182, 206, 473, 553
CviKI_1 RGCY 8 cut(s) 26, 92, 107, 176, 182, 206, 473, 553
CviQI GTAC 1 cut(s) 115
DdeI CTNAG 1 cut(s) 474
DpnI GATC 8 cut(s) 15, 143, 170, 192, 249, 411, 453, 610
DpnII GATC 8 cut(s) 13, 141, 168, 190, 247, 409, 451, 608
EaeI YGGCCR 1 cut(s) 174
Eam1104I CTCTTC 1 cut(s) 525
EarI CTCTTC 1 cut(s) 525
Eco130I CCWWGG 1 cut(s) 177
Eco31I GGTCTC 3 cut(s) 71, 287, 428
Eco57I CTGAAG 1 cut(s) 605
EcoRII CCWGG 1 cut(s) 620
EcoT14I CCWWGG 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 5 cut(s) 175, 181, 260, 410, 467
FaqI GGGAC 1 cut(s) 315
FatI CATG 5 cut(s) 171, 177, 256, 406, 463
FbaI TGATCA 2 cut(s) 190, 409
Fnu4HI GCNGC 5 cut(s) 24, 183, 204, 207, 404
FokI GGATG 2 cut(s) 146, 533
Fsp4HI GCNGC 5 cut(s) 24, 183, 204, 207, 404
FspBI CTAG 2 cut(s) 338, 603
GluI GCNGC 5 cut(s) 24, 183, 204, 207, 404
HaeIII GGCC 2 cut(s) 92, 176
HapII CCGG 1 cut(s) 550
Hin1II CATG 5 cut(s) 175, 181, 260, 410, 467
HinfI GANTC 1 cut(s) 575
HpaII CCGG 1 cut(s) 550
HphI GGTGA 1 cut(s) 429
Hpy188I TCNGA 4 cut(s) 60, 278, 418, 585
Hpy188III TCNNGA 1 cut(s) 612
HpyAV CCTTC 3 cut(s) 221, 349, 580
HpyCH4III ACNGT 1 cut(s) 119
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 1 cut(s) 474
Hsp92II CATG 5 cut(s) 175, 181, 260, 410, 467
Ksp22I TGATCA 2 cut(s) 190, 409
Kzo9I GATC 8 cut(s) 13, 141, 168, 190, 247, 409, 451, 608
Lsp1109I GCAGC 5 cut(s) 35, 169, 193, 215, 415
LweI GCATC 2 cut(s) 64, 514
MaeI CTAG 2 cut(s) 338, 603
MaeIII GTNAC 2 cut(s) 71, 466
MalI GATC 8 cut(s) 15, 143, 170, 192, 249, 411, 453, 610
MboI GATC 8 cut(s) 13, 141, 168, 190, 247, 409, 451, 608
MboII GAAGA 5 cut(s) 371, 404, 407, 533, 542
MflI RGATCY 1 cut(s) 141
MlsI TGGCCA 1 cut(s) 176
MluCI AATT 4 cut(s) 294, 427, 502, 513
MluNI TGGCCA 1 cut(s) 176
MnlI CCTC 6 cut(s) 54, 272, 455, 469, 526, 529
Mox20I TGGCCA 1 cut(s) 176
MroXI GAANNNNTTC 1 cut(s) 216
MscI TGGCCA 1 cut(s) 176
MslI CAYNNNNRTG 1 cut(s) 176
Msp20I TGGCCA 1 cut(s) 176
MspA1I CMGCKG 1 cut(s) 206
MspI CCGG 1 cut(s) 550
MspR9I CCNGG 1 cut(s) 622
Mva1269I GAATGC 3 cut(s) 216, 238, 598
MvaI CCWGG 1 cut(s) 622
MwoI GCNNNNNNNGC 1 cut(s) 182
NcoI CCATGG 1 cut(s) 177
NdeII GATC 8 cut(s) 13, 141, 168, 190, 247, 409, 451, 608
NlaIII CATG 5 cut(s) 175, 181, 260, 410, 467
NlaIV GGNNCC 1 cut(s) 93
NmuCI GTSAC 2 cut(s) 71, 466
PctI GAATGC 3 cut(s) 216, 238, 598
PdmI GAANNNNTTC 1 cut(s) 216
PfeI GAWTC 1 cut(s) 575
PkrI GCNGC 5 cut(s) 25, 184, 205, 208, 405
Psp6I CCWGG 1 cut(s) 620
PspGI CCWGG 1 cut(s) 620
PspN4I GGNNCC 1 cut(s) 93
PspPI GGNCC 1 cut(s) 91
PsrI GAACNNNNNNTAC 2 cut(s) 107, 139
PstNI CAGNNNCTG 1 cut(s) 209
PsuI RGATCY 1 cut(s) 141
PvuII CAGCTG 1 cut(s) 206
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
RseI CAYNNNNRTG 1 cut(s) 176
SatI GCNGC 5 cut(s) 24, 183, 204, 207, 404
Sau3AI GATC 8 cut(s) 13, 141, 168, 190, 247, 409, 451, 608
Sau96I GGNCC 1 cut(s) 91
ScrFI CCNGG 1 cut(s) 622
SfaNI GCATC 2 cut(s) 64, 514
SmiMI CAYNNNNRTG 1 cut(s) 176
Sse9I AATT 4 cut(s) 294, 427, 502, 513
SspMI CTAG 2 cut(s) 338, 603
StyD4I CCNGG 1 cut(s) 620
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 1 cut(s) 119
TasI AATT 4 cut(s) 294, 427, 502, 513
TfiI GAWTC 1 cut(s) 575
TscAI CASTG 1 cut(s) 124
TseFI GTSAC 2 cut(s) 71, 466
TseI GCWGC 5 cut(s) 23, 182, 203, 206, 403
Tsp45I GTSAC 2 cut(s) 71, 466
TspDTI ATGAA 2 cut(s) 341, 504
TspGWI ACGGA 1 cut(s) 239
TspRI CASTG 1 cut(s) 124
XapI RAATTY 1 cut(s) 294
XmnI GAANNNNTTC 1 cut(s) 216
XspI CTAG 2 cut(s) 338, 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.