Rw2G006450

lob domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0011216
Physical Location & Seq
Forward (+)
6187419 .. 6189212
1794 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G006450.1

Sequence Viewer

Length: 597 bp
ATGGATAGGGAGAGTTCACCATCACCTCTAAATCAAGCTTGTGCTTCTTGCAAGCACCAGAGAAAGAAATGTGACTCCAACTGTGAATTGGCTCCATACTTTCCGGCGAACAAGTACCATGAGTTTCAGAACGCTCACAAACTTTTTGGCGTGAGCAACATACTGAAGATCATAGCCTCTATTGAACCACATAAAAGAAAAGCTGCTGCTGAATCCATACTCTTTGAAGGGAACGCTTGGAAGAGTGATCCTGTGCATGGTTGCCTCGGTGTGATCAAAGATCTGACAGCCCAGATGTCGTTTCACGAAAAACAACTCAGTCCCGATGAACTAATGGAAGACATGAAAATTTTTGAACATGGACACAATTACTGGTCAAATTTGGTCGGAGCAGACGGGGAGAAGCCCTTTGACATGGAGCACACAGAAGCATTTGATCATGAGGAAGTAAATCCCCTTGCATATTTCAATGGACAAGCTGGAGAATGCAGAATTCAAAAATCCCTCATATTACATCTCAATGACCAAAAAACTGCCAATAGTAGAGCTAACAAAAATAAAACAACCAAACTAAAAAATGTAAAAAGCAAAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

198

Amino Acids

22.42

Weight (kDa)

7.68

Isoelectric Point (pI)

50.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 13 - 106 2e-34 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 242
AcsI RAATTY 3 cut(s) 348, 379, 492
AcuI CTGAAG 1 cut(s) 185
AfaI GTAC 1 cut(s) 116
AfiI CCNNNNNNNGG 1 cut(s) 257
AgsI TTSAA 5 cut(s) 185, 227, 356, 469, 497
AluBI AGCT 4 cut(s) 38, 203, 479, 548
AluI AGCT 4 cut(s) 38, 203, 479, 548
Alw21I GWGCWC 1 cut(s) 423
AlwI GGATC 1 cut(s) 242
ApeKI GCWGC 2 cut(s) 203, 206
ApoI RAATTY 3 cut(s) 348, 379, 492
AsuHPI GGTGA 2 cut(s) 9, 15
BbsI GAAGAC 1 cut(s) 345
Bbv12I GWGCWC 1 cut(s) 423
BbvI GCAGC 2 cut(s) 190, 193
BccI CCATC 1 cut(s) 28
BclI TGATCA 2 cut(s) 273, 436
BglII AGATCT 1 cut(s) 280
BisI GCNGC 2 cut(s) 204, 207
BlsI GCNGC 2 cut(s) 205, 208
BmiI GGNNCC 1 cut(s) 93
BpiI GAAGAC 1 cut(s) 345
BpmI CTGGAG 1 cut(s) 501
BsaJI CCNNGG 1 cut(s) 265
Bsc4I CCNNNNNNNGG 1 cut(s) 257
Bse1I ACTGG 1 cut(s) 377
BseDI CCNNGG 1 cut(s) 265
BseLI CCNNNNNNNGG 1 cut(s) 257
BseMII CTCAG 1 cut(s) 331
BseNI ACTGG 1 cut(s) 377
BseXI GCAGC 2 cut(s) 190, 193
BsiHKAI GWGCWC 1 cut(s) 423
BsiSI CCGG 1 cut(s) 104
BslFI GGGAC 1 cut(s) 306
BslI CCNNNNNNNGG 1 cut(s) 257
BsmFI GGGAC 1 cut(s) 306
BsmI GAATGC 1 cut(s) 491
Bsp1286I GDGCHC 1 cut(s) 423
Bsp143I GATC 5 cut(s) 168, 247, 273, 280, 436
BspCNI CTCAG 1 cut(s) 330
BspHI TCATGA 1 cut(s) 439
BspLI GGNNCC 1 cut(s) 93
BspPI GGATC 1 cut(s) 242
BsrI ACTGG 1 cut(s) 377
BssECI CCNNGG 1 cut(s) 265
BssMI GATC 5 cut(s) 168, 247, 273, 280, 436
Bst4CI ACNGT 1 cut(s) 83
Bst6I CTCTTC 1 cut(s) 236
BstC8I GCNNGC 1 cut(s) 53
BstDEI CTNAG 1 cut(s) 317
BstKTI GATC 5 cut(s) 171, 250, 276, 283, 439
BstMBI GATC 5 cut(s) 168, 247, 273, 280, 436
BstV1I GCAGC 2 cut(s) 190, 193
BstV2I GAAGAC 1 cut(s) 345
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
Cac8I GCNNGC 1 cut(s) 53
CciI TCATGA 1 cut(s) 439
Csp6I GTAC 1 cut(s) 115
CviAII CATG 6 cut(s) 119, 257, 343, 359, 415, 440
CviJI RGCY 8 cut(s) 38, 92, 176, 203, 290, 406, 479, 548
CviKI_1 RGCY 8 cut(s) 38, 92, 176, 203, 290, 406, 479, 548
CviQI GTAC 1 cut(s) 115
DdeI CTNAG 1 cut(s) 317
DpnI GATC 5 cut(s) 170, 249, 275, 282, 438
DpnII GATC 5 cut(s) 168, 247, 273, 280, 436
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
Eco57I CTGAAG 1 cut(s) 185
EcoRI GAATTC 1 cut(s) 492
FaeI CATG 6 cut(s) 122, 260, 346, 362, 418, 443
FaqI GGGAC 1 cut(s) 306
FatI CATG 6 cut(s) 118, 256, 342, 358, 414, 439
FbaI TGATCA 2 cut(s) 273, 436
Fnu4HI GCNGC 2 cut(s) 204, 207
Fsp4HI GCNGC 2 cut(s) 204, 207
GluI GCNGC 2 cut(s) 204, 207
GsuI CTGGAG 1 cut(s) 501
HapII CCGG 1 cut(s) 104
Hin1II CATG 6 cut(s) 122, 260, 346, 362, 418, 443
HindIII AAGCTT 1 cut(s) 36
HinfI GANTC 2 cut(s) 74, 212
HpaII CCGG 1 cut(s) 104
HphI GGTGA 2 cut(s) 9, 15
Hpy166II GTNNAC 1 cut(s) 17
Hpy188I TCNGA 3 cut(s) 129, 285, 389
Hpy188III TCNNGA 3 cut(s) 305, 323, 440
Hpy8I GTNNAC 1 cut(s) 17
HpyAV CCTTC 1 cut(s) 221
HpyCH4III ACNGT 1 cut(s) 83
HpyCH4V TGCA 4 cut(s) 51, 256, 461, 489
HpyF3I CTNAG 1 cut(s) 317
Hsp92II CATG 6 cut(s) 122, 260, 346, 362, 418, 443
Ksp22I TGATCA 2 cut(s) 273, 436
Kzo9I GATC 5 cut(s) 168, 247, 273, 280, 436
LmnI GCTCC 3 cut(s) 97, 389, 418
LpnPI CCDG 6 cut(s) 71, 117, 264, 305, 358, 465
Lsp1109I GCAGC 2 cut(s) 190, 193
MaeIII GTNAC 1 cut(s) 71
MalI GATC 5 cut(s) 170, 249, 275, 282, 438
MboI GATC 5 cut(s) 168, 247, 273, 280, 436
MboII GAAGA 3 cut(s) 178, 253, 350
MflI RGATCY 1 cut(s) 280
MhlI GDGCHC 1 cut(s) 423
MluCI AATT 5 cut(s) 86, 348, 367, 379, 492
MlyI GAGTC 1 cut(s) 68
MmeI TCCRAC 2 cut(s) 102, 367
MnlI CCTC 5 cut(s) 36, 187, 275, 436, 515
MslI CAYNNNNRTG 1 cut(s) 519
MspI CCGG 1 cut(s) 104
Mva1269I GAATGC 1 cut(s) 491
NdeII GATC 5 cut(s) 168, 247, 273, 280, 436
NlaIII CATG 6 cut(s) 122, 260, 346, 362, 418, 443
NlaIV GGNNCC 1 cut(s) 93
NmuCI GTSAC 1 cut(s) 71
PagI TCATGA 1 cut(s) 439
PctI GAATGC 1 cut(s) 491
PfeI GAWTC 1 cut(s) 212
PkrI GCNGC 2 cut(s) 205, 208
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
PspN4I GGNNCC 1 cut(s) 93
PsuI RGATCY 1 cut(s) 280
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
RseI CAYNNNNRTG 1 cut(s) 519
SatI GCNGC 2 cut(s) 204, 207
Sau3AI GATC 5 cut(s) 168, 247, 273, 280, 436
SchI GAGTC 1 cut(s) 68
SduI GDGCHC 1 cut(s) 423
SetI ASST 5 cut(s) 28, 40, 205, 481, 550
SmiMI CAYNNNNRTG 1 cut(s) 519
Sse9I AATT 5 cut(s) 86, 348, 367, 379, 492
TaaI ACNGT 1 cut(s) 83
TasI AATT 5 cut(s) 86, 348, 367, 379, 492
TfiI GAWTC 1 cut(s) 212
TseFI GTSAC 1 cut(s) 71
TseI GCWGC 2 cut(s) 203, 206
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 2 cut(s) 342, 359
XapI RAATTY 3 cut(s) 348, 379, 492
XcmI CCANNNNNNNNNTGG 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.