Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005319

Physical Location & Seq

Genomic Coordinates Forward (+)

13614890 .. 13616233

Gene Structure 1344 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G36240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGTTGCAGCGAAGAAGACGAAGAAGTCCCATGAAGGAATCAACAGCAGATTGGCTTTGGTGATGAAGAGTGGCAAATACACTCTTGGTTACAAATCTGTTCTCAAATCTCTTCGCAGTTCCAAAGGTAAGTTGATATTGATATCTAGCAATTGCCCACCATTGAGGAGATCTGAGATTGAGTACTATGCTATGCTTGCTAAAGTTGGAGTTCATCACTACAATAGAAACAATGTTGATCTTGGTACTGCCTGCGGTAAATACTTCCGTGTGTCATGCCTCAGCATAGTTGACCCAGGTGACTCTGACATCATCAAGTCGCTTCCTGGAGACCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

112

Amino Acids

12.32

Weight (kDa)

9.8

Isoelectric Point (pI)

50.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	14 - 105	7.1e-24	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36240 AT1G77940 AT3G18740
fragaria_vesca	FvH4_5g28040 FvH4_5g38130 FvH4_7g04710
malus_domestica	MD08G1176600.v1.1 MD15G1363000.v1.1 MD15G1431500.v1.1
prunus_persica	Prupe.1G096700_v2.0.a1 Prupe.1G511000_v2.0.a1
pyrus_communis	pycom08g15150 pycom15g32500 pycom15g38130
rosa_chinensis	RchiOBHm_Chr6g0275411 RchiOBHm_Chr7g0240111
rosa_laevigata	RLG00000000705 RLG00000013464
rosa_multiflora	Rmu_sc0005008.1_g000029 Rmu_sc0007358.1_g000013
rosa_roxburghii	Rroxscaffold_3G00220410 Rroxscaffold_7G00193340
rosa_rugosa	Rorug06G0091900 Rorug07G0333300
rosa_samantha	Rh6BG208400 Rh6DG200900 Rh7AG486900
rosa_wichuraiana	Rw6G017820 Rw7G040800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	25
AciI	CCGC	1 cut(s)	255
AfaI	GTAC	2 cut(s)	185, 247
AjnI	CCWGG	2 cut(s)	295, 325
Alw26I	GTCTC	1 cut(s)	324
ApeKI	GCWGC	1 cut(s)	8
AsuHPI	GGTGA	2 cut(s)	73, 311
BbsI	GAAGAC	1 cut(s)	23
BbvCI	CCTCAGC	1 cut(s)	281
BbvI	GCAGC	1 cut(s)	20
BciT130I	CCWGG	2 cut(s)	297, 327
BcoDI	GTCTC	1 cut(s)	324
BfaI	CTAG	1 cut(s)	147
BglII	AGATCT	1 cut(s)	170
BisI	GCNGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	10
BmcAI	AGTACT	1 cut(s)	185
Bme1390I	CCNGG	2 cut(s)	297, 327
BmrFI	CCNGG	2 cut(s)	297, 327
BpiI	GAAGAC	1 cut(s)	23
Bpu10I	CCTNAGC	1 cut(s)	281
BsaI	GGTCTC	1 cut(s)	324
BsaJI	CCNNGG	1 cut(s)	295
Bse1I	ACTGG	1 cut(s)	334
BseBI	CCWGG	2 cut(s)	297, 327
BseDI	CCNNGG	1 cut(s)	295
BseMII	CTCAG	2 cut(s)	165, 295
BseNI	ACTGG	1 cut(s)	334
BseRI	GAGGAG	1 cut(s)	181
BseXI	GCAGC	1 cut(s)	20
BslFI	GGGAC	1 cut(s)	13
BsmAI	GTCTC	1 cut(s)	324
BsmFI	GGGAC	1 cut(s)	13
Bso31I	GGTCTC	1 cut(s)	324
Bsp143I	GATC	2 cut(s)	170, 238
BspACI	CCGC	1 cut(s)	255
BspCNI	CTCAG	2 cut(s)	166, 294
BspTNI	GGTCTC	1 cut(s)	324
BsrI	ACTGG	1 cut(s)	334
BssECI	CCNNGG	1 cut(s)	295
BssMI	GATC	2 cut(s)	170, 238
Bst2UI	CCWGG	2 cut(s)	297, 327
Bst6I	CTCTTC	2 cut(s)	62, 117
BstC8I	GCNNGC	2 cut(s)	198, 253
BstDEI	CTNAG	2 cut(s)	174, 281
BstKTI	GATC	2 cut(s)	173, 241
BstMAI	GTCTC	1 cut(s)	324
BstMBI	GATC	2 cut(s)	170, 238
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNI	CCWGG	2 cut(s)	297, 327
BstSCI	CCNGG	2 cut(s)	295, 325
BstV1I	GCAGC	1 cut(s)	20
BstV2I	GAAGAC	1 cut(s)	23
BstX2I	RGATCY	1 cut(s)	170
BstYI	RGATCY	1 cut(s)	170
Cac8I	GCNNGC	2 cut(s)	198, 253
Csp6I	GTAC	2 cut(s)	184, 246
CviAII	CATG	2 cut(s)	32, 276
CviJI	RGCY	1 cut(s)	56
CviKI_1	RGCY	1 cut(s)	56
CviQI	GTAC	2 cut(s)	184, 246
DdeI	CTNAG	2 cut(s)	174, 281
DpnI	GATC	2 cut(s)	172, 240
DpnII	GATC	2 cut(s)	170, 238
DrdI	GACNNNNNNGTC	1 cut(s)	25
DseDI	GACNNNNNNGTC	1 cut(s)	25
Eam1104I	CTCTTC	2 cut(s)	62, 117
EarI	CTCTTC	2 cut(s)	62, 117
Eco31I	GGTCTC	1 cut(s)	324
Eco32I	GATATC	1 cut(s)	144
EcoRII	CCWGG	2 cut(s)	295, 325
EcoRV	GATATC	1 cut(s)	144
FaeI	CATG	2 cut(s)	35, 279
FaiI	YATR	5 cut(s)	33, 189, 194, 277, 287
FaqI	GGGAC	1 cut(s)	13
FatI	CATG	2 cut(s)	31, 275
Fnu4HI	GCNGC	1 cut(s)	9
Fsp4HI	GCNGC	1 cut(s)	9
FspBI	CTAG	1 cut(s)	147
GluI	GCNGC	1 cut(s)	9
Hin1II	CATG	2 cut(s)	35, 279
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HinfI	GANTC	2 cut(s)	39, 302
HphI	GGTGA	2 cut(s)	73, 311
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	2 cut(s)	175, 307
Hpy8I	GTNNAC	1 cut(s)	292
HpyAV	CCTTC	1 cut(s)	29
HpyCH4V	TGCA	1 cut(s)	8
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	2 cut(s)	174, 281
Hsp92II	CATG	2 cut(s)	35, 279
Kzo9I	GATC	2 cut(s)	170, 238
LpnPI	CCDG	4 cut(s)	265, 282, 309, 312
Lsp1109I	GCAGC	1 cut(s)	20
MaeI	CTAG	1 cut(s)	147
MaeIII	GTNAC	2 cut(s)	89, 299
MalI	GATC	2 cut(s)	172, 240
MboI	GATC	2 cut(s)	170, 238
MboII	GAAGA	5 cut(s)	25, 28, 34, 79, 104
MfeI	CAATTG	1 cut(s)	151
MflI	RGATCY	1 cut(s)	170
MluCI	AATT	1 cut(s)	151
MlyI	GAGTC	1 cut(s)	296
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	2 cut(s)	159, 290
MspR9I	CCNGG	2 cut(s)	297, 327
MunI	CAATTG	1 cut(s)	151
MvaI	CCWGG	2 cut(s)	297, 327
MwoI	GCNNNNNNNGC	1 cut(s)	197
NdeII	GATC	2 cut(s)	170, 238
NlaIII	CATG	2 cut(s)	35, 279
NmuCI	GTSAC	1 cut(s)	299
PfeI	GAWTC	1 cut(s)	39
PfoI	TCCNGGA	1 cut(s)	325
PkrI	GCNGC	1 cut(s)	10
PleI	GAGTC	1 cut(s)	296
PpsI	GAGTC	1 cut(s)	296
Psp6I	CCWGG	2 cut(s)	295, 325
PspGI	CCWGG	2 cut(s)	295, 325
PsuI	RGATCY	1 cut(s)	170
RsaI	GTAC	2 cut(s)	185, 247
RsaNI	GTAC	2 cut(s)	184, 246
SatI	GCNGC	1 cut(s)	9
Sau3AI	GATC	2 cut(s)	170, 238
ScaI	AGTACT	1 cut(s)	185
SchI	GAGTC	1 cut(s)	296
ScrFI	CCNGG	2 cut(s)	297, 327
SetI	ASST	2 cut(s)	130, 301
Sse9I	AATT	1 cut(s)	151
SsiI	CCGC	1 cut(s)	255
SspMI	CTAG	1 cut(s)	147
StyD4I	CCNGG	2 cut(s)	295, 325
TasI	AATT	1 cut(s)	151
TatI	WGTACW	1 cut(s)	183
TfiI	GAWTC	1 cut(s)	39
TseFI	GTSAC	1 cut(s)	299
TseI	GCWGC	1 cut(s)	8
Tsp45I	GTSAC	1 cut(s)	299
TspDTI	ATGAA	3 cut(s)	48, 80, 203
TspGWI	ACGGA	1 cut(s)	257
XspI	CTAG	1 cut(s)	147
ZrmI	AGTACT	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.