Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005319

Physical Location & Seq

Genomic Coordinates Reverse (-)

7683948 .. 7686158

Gene Structure 2211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G096700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGTGGCCGTGAAGAAGACCAAGAAGACCCATGAGAGCATCAACACCAGGCTCGCTCTGGTCATGAAGAGCGGAAAATACACCTTGGGTTACAAAACCGTCATTGATTCTCTTCGCAACTCCAAAGGGAAGCTGATTATAATTTCCAACAATTGCCCACCTCTGCGAAAGTCCGAAATCGAATACTATGCTATGCTTGCCAAGGTTGGGGTTCACCACTACAATGGAAACAATGTTGATCTGGGTACAGCTTGTGGAAAGTATTTCCGTGTATCATGCCTTAGCATTGTTGATCCAGGTGACTCGGATATTATCAAGACGCTACCTGGTGGTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

113

Amino Acids

12.29

Weight (kDa)

9.62

Isoelectric Point (pI)

33.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36240 AT1G77940 AT3G18740
fragaria_vesca	FvH4_5g28040 FvH4_5g38130 FvH4_7g04710
malus_domestica	MD08G1176600.v1.1 MD15G1363000.v1.1 MD15G1431500.v1.1
prunus_persica	Prupe.1G096700_v2.0.a1 Prupe.1G511000_v2.0.a1
pyrus_communis	pycom08g15150 pycom15g32500 pycom15g38130
rosa_chinensis	RchiOBHm_Chr6g0275411 RchiOBHm_Chr7g0240111
rosa_laevigata	RLG00000000705 RLG00000013464
rosa_multiflora	Rmu_sc0005008.1_g000029 Rmu_sc0007358.1_g000013
rosa_roxburghii	Rroxscaffold_3G00220410 Rroxscaffold_7G00193340
rosa_rugosa	Rorug06G0091900 Rorug07G0333300
rosa_samantha	Rh6BG208400 Rh6DG200900 Rh7AG486900
rosa_wichuraiana	Rw6G017820 Rw7G040800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	140
AccBSI	CCGCTC	1 cut(s)	72
AciI	CCGC	1 cut(s)	72
AclWI	GGATC	1 cut(s)	287
AcoI	YGGCCR	1 cut(s)	6
AfaI	GTAC	1 cut(s)	247
AfiI	CCNNNNNNNGG	1 cut(s)	207
AjnI	CCWGG	3 cut(s)	47, 295, 325
AluBI	AGCT	2 cut(s)	133, 251
AluI	AGCT	2 cut(s)	133, 251
AlwI	GGATC	1 cut(s)	287
AoxI	GGCC	1 cut(s)	6
AsuHPI	GGTGA	2 cut(s)	206, 311
BbsI	GAAGAC	2 cut(s)	23, 32
BcgI	CGANNNNNNTGC	2 cut(s)	170, 204
BciT130I	CCWGG	3 cut(s)	49, 297, 327
Bme1390I	CCNGG	3 cut(s)	49, 297, 327
BmrFI	CCNGG	3 cut(s)	49, 297, 327
BmsI	GCATC	1 cut(s)	48
BpiI	GAAGAC	2 cut(s)	23, 32
Bpu10I	CCTNAGC	1 cut(s)	281
BsaJI	CCNNGG	2 cut(s)	84, 201
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
BseBI	CCWGG	3 cut(s)	49, 297, 327
BseDI	CCNNGG	2 cut(s)	84, 201
BseLI	CCNNNNNNNGG	1 cut(s)	207
BshFI	GGCC	1 cut(s)	8
BslI	CCNNNNNNNGG	1 cut(s)	207
BsnI	GGCC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	238, 292
BspACI	CCGC	1 cut(s)	72
BspANI	GGCC	1 cut(s)	8
BspHI	TCATGA	1 cut(s)	63
BspPI	GGATC	1 cut(s)	287
BspQI	GCTCTTC	1 cut(s)	62
BsrBI	CCGCTC	1 cut(s)	72
BssECI	CCNNGG	2 cut(s)	84, 201
BssMI	GATC	2 cut(s)	238, 292
BssT1I	CCWWGG	2 cut(s)	84, 201
Bst2UI	CCWGG	3 cut(s)	49, 297, 327
Bst4CI	ACNGT	1 cut(s)	100
Bst6I	CTCTTC	2 cut(s)	62, 117
BstC8I	GCNNGC	2 cut(s)	54, 198
BstDEI	CTNAG	1 cut(s)	281
BstKTI	GATC	2 cut(s)	241, 295
BstMBI	GATC	2 cut(s)	238, 292
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNI	CCWGG	3 cut(s)	49, 297, 327
BstSCI	CCNGG	3 cut(s)	47, 295, 325
BstV2I	GAAGAC	2 cut(s)	23, 32
BstXI	CCANNNNNNTGG	1 cut(s)	224
BsuRI	GGCC	1 cut(s)	8
Cac8I	GCNNGC	2 cut(s)	54, 198
CciI	TCATGA	1 cut(s)	63
CseI	GACGC	1 cut(s)	328
CsiI	ACCWGGT	1 cut(s)	325
Csp6I	GTAC	1 cut(s)	246
CviAII	CATG	3 cut(s)	32, 64, 276
CviJI	RGCY	4 cut(s)	8, 52, 133, 251
CviKI_1	RGCY	4 cut(s)	8, 52, 133, 251
CviQI	GTAC	1 cut(s)	246
DdeI	CTNAG	1 cut(s)	281
DpnI	GATC	2 cut(s)	240, 294
DpnII	GATC	2 cut(s)	238, 292
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	2 cut(s)	62, 117
EarI	CTCTTC	2 cut(s)	62, 117
Eco130I	CCWWGG	2 cut(s)	84, 201
EcoRII	CCWGG	3 cut(s)	47, 295, 325
EcoT14I	CCWWGG	2 cut(s)	84, 201
ErhI	CCWWGG	2 cut(s)	84, 201
FaeI	CATG	3 cut(s)	35, 67, 279
FaiI	YATR	6 cut(s)	33, 65, 140, 189, 194, 277
FatI	CATG	3 cut(s)	31, 63, 275
HaeIII	GGCC	1 cut(s)	8
HgaI	GACGC	1 cut(s)	328
Hin1II	CATG	3 cut(s)	35, 67, 279
HinfI	GANTC	2 cut(s)	107, 302
HphI	GGTGA	2 cut(s)	206, 311
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	2 cut(s)	175, 307
Hpy188III	TCNNGA	2 cut(s)	64, 316
Hpy8I	GTNNAC	1 cut(s)	214
HpyCH4III	ACNGT	1 cut(s)	100
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	1 cut(s)	281
Hsp92II	CATG	3 cut(s)	35, 67, 279
Kzo9I	GATC	2 cut(s)	238, 292
LguI	GCTCTTC	1 cut(s)	62
LpnPI	CCDG	7 cut(s)	34, 44, 61, 227, 282, 309, 312
LweI	GCATC	1 cut(s)	48
MabI	ACCWGGT	1 cut(s)	325
MaeIII	GTNAC	2 cut(s)	89, 299
MalI	GATC	2 cut(s)	240, 294
MbiI	CCGCTC	1 cut(s)	72
MboI	GATC	2 cut(s)	238, 292
MboII	GAAGA	5 cut(s)	25, 28, 37, 79, 104
MfeI	CAATTG	1 cut(s)	151
MluCI	AATT	2 cut(s)	141, 151
MlyI	GAGTC	1 cut(s)	296
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	1 cut(s)	171
MslI	CAYNNNNRTG	1 cut(s)	222
MspR9I	CCNGG	3 cut(s)	49, 297, 327
MunI	CAATTG	1 cut(s)	151
MvaI	CCWGG	3 cut(s)	49, 297, 327
MwoI	GCNNNNNNNGC	1 cut(s)	197
NdeII	GATC	2 cut(s)	238, 292
NlaIII	CATG	3 cut(s)	35, 67, 279
NmuCI	GTSAC	1 cut(s)	299
PagI	TCATGA	1 cut(s)	63
PciSI	GCTCTTC	1 cut(s)	62
PfeI	GAWTC	1 cut(s)	107
PleI	GAGTC	1 cut(s)	296
PpsI	GAGTC	1 cut(s)	296
PsiI	TTATAA	1 cut(s)	140
Psp6I	CCWGG	3 cut(s)	47, 295, 325
PspGI	CCWGG	3 cut(s)	47, 295, 325
RsaI	GTAC	1 cut(s)	247
RsaNI	GTAC	1 cut(s)	246
RseI	CAYNNNNRTG	1 cut(s)	222
SapI	GCTCTTC	1 cut(s)	62
Sau3AI	GATC	2 cut(s)	238, 292
SchI	GAGTC	1 cut(s)	296
ScrFI	CCNGG	3 cut(s)	49, 297, 327
SetI	ASST	7 cut(s)	86, 135, 163, 207, 253, 301, 328
SexAI	ACCWGGT	1 cut(s)	325
SfaNI	GCATC	1 cut(s)	48
SmiMI	CAYNNNNRTG	1 cut(s)	222
Sse9I	AATT	2 cut(s)	141, 151
SsiI	CCGC	1 cut(s)	72
StyD4I	CCNGG	3 cut(s)	47, 295, 325
StyI	CCWWGG	2 cut(s)	84, 201
TaaI	ACNGT	1 cut(s)	100
TaqI	TCGA	1 cut(s)	180
TasI	AATT	2 cut(s)	141, 151
TfiI	GAWTC	1 cut(s)	107
TseFI	GTSAC	1 cut(s)	299
Tsp45I	GTSAC	1 cut(s)	299
TspDTI	ATGAA	1 cut(s)	80
TspGWI	ACGGA	1 cut(s)	257
XcmI	CCANNNNNNNNNTGG	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.