Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0005319

Physical Location & Seq

Genomic Coordinates Forward (+)

28179307 .. 28181461

Gene Structure 2155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g38130.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGTGGCCGTGAAGAAAACCAAGAAGACCCATGAGTCTATCAATAACAGGCTCGCTCTCGTCATGAAGAGTGGCAAGTACACTCTCGGCTACAAGACCGTCATCGACACTCTGCGTAGCTCCAAAGGGAAGCTTATTATCATCTCGAACAACTGCCCTCCTCTGAGAAAGTCTGAGATTGAGTACTACGCCATGCTTGCCAAGGTTGGAGTTCATCACTACAATGGAAACAATGTTGACCTGGGTACAGCATGTGGCAAGTACTTCCGCGTGTCATGCCTCAGCATTATTGATCCAGGTGATTCGGATATCATCAAGACACTGCCTGGTGATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

113

Amino Acids

12.36

Weight (kDa)

9.52

Isoelectric Point (pI)

37.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	13 - 105	9.2e-25	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36240 AT1G77940 AT3G18740
fragaria_vesca	FvH4_5g28040 FvH4_5g38130 FvH4_7g04710
malus_domestica	MD08G1176600.v1.1 MD15G1363000.v1.1 MD15G1431500.v1.1
prunus_persica	Prupe.1G096700_v2.0.a1 Prupe.1G511000_v2.0.a1
pyrus_communis	pycom08g15150 pycom15g32500 pycom15g38130
rosa_chinensis	RchiOBHm_Chr6g0275411 RchiOBHm_Chr7g0240111
rosa_laevigata	RLG00000000705 RLG00000013464
rosa_multiflora	Rmu_sc0005008.1_g000029 Rmu_sc0007358.1_g000013
rosa_roxburghii	Rroxscaffold_3G00220410 Rroxscaffold_7G00193340
rosa_rugosa	Rorug06G0091900 Rorug07G0333300
rosa_samantha	Rh6BG208400 Rh6DG200900 Rh7AG486900
rosa_wichuraiana	Rw6G017820 Rw7G040800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	34
AccII	CGCG	1 cut(s)	270
AciI	CCGC	1 cut(s)	268
AclWI	GGATC	1 cut(s)	287
AcoI	YGGCCR	1 cut(s)	6
AfaI	GTAC	4 cut(s)	80, 185, 247, 263
AjnI	CCWGG	3 cut(s)	240, 295, 325
AluBI	AGCT	2 cut(s)	120, 133
AluI	AGCT	2 cut(s)	120, 133
AlwI	GGATC	1 cut(s)	287
AoxI	GGCC	1 cut(s)	6
AsuHPI	GGTGA	1 cut(s)	311
BbsI	GAAGAC	1 cut(s)	32
BbvCI	CCTCAGC	1 cut(s)	281
BciT130I	CCWGG	3 cut(s)	242, 297, 327
BclI	TGATCA	1 cut(s)	331
BmcAI	AGTACT	2 cut(s)	185, 263
Bme1390I	CCNGG	3 cut(s)	242, 297, 327
BmrFI	CCNGG	3 cut(s)	242, 297, 327
BpiI	GAAGAC	1 cut(s)	32
Bpu10I	CCTNAGC	1 cut(s)	281
BsaJI	CCNNGG	2 cut(s)	201, 241
BseBI	CCWGG	3 cut(s)	242, 297, 327
BseDI	CCNNGG	2 cut(s)	201, 241
BseMII	CTCAG	3 cut(s)	155, 165, 295
BseRI	GAGGAG	1 cut(s)	150
Bsh1236I	CGCG	1 cut(s)	270
BshFI	GGCC	1 cut(s)	8
BsnI	GGCC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	292, 331
BspACI	CCGC	1 cut(s)	268
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	3 cut(s)	156, 166, 294
BspFNI	CGCG	1 cut(s)	270
BspHI	TCATGA	1 cut(s)	63
BspPI	GGATC	1 cut(s)	287
BssECI	CCNNGG	2 cut(s)	201, 241
BssMI	GATC	2 cut(s)	292, 331
BssT1I	CCWWGG	1 cut(s)	201
Bst2UI	CCWGG	3 cut(s)	242, 297, 327
Bst4CI	ACNGT	1 cut(s)	100
Bst6I	CTCTTC	1 cut(s)	62
BstC8I	GCNNGC	2 cut(s)	54, 198
BstDEI	CTNAG	3 cut(s)	164, 174, 281
BstFNI	CGCG	1 cut(s)	270
BstKTI	GATC	2 cut(s)	295, 334
BstMBI	GATC	2 cut(s)	292, 331
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 276
BstNI	CCWGG	3 cut(s)	242, 297, 327
BstNSI	RCATGY	1 cut(s)	255
BstSCI	CCNGG	3 cut(s)	240, 295, 325
BstUI	CGCG	1 cut(s)	270
BstV2I	GAAGAC	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	8
BtsI	GCAGTG	1 cut(s)	320
BtsIMutI	CAGTG	1 cut(s)	320
Cac8I	GCNNGC	2 cut(s)	54, 198
CciI	TCATGA	1 cut(s)	63
Csp6I	GTAC	4 cut(s)	79, 184, 246, 262
CviAII	CATG	5 cut(s)	32, 64, 193, 252, 276
CviJI	RGCY	5 cut(s)	8, 52, 90, 120, 133
CviKI_1	RGCY	5 cut(s)	8, 52, 90, 120, 133
CviQI	GTAC	4 cut(s)	79, 184, 246, 262
DdeI	CTNAG	3 cut(s)	164, 174, 281
DpnI	GATC	2 cut(s)	294, 333
DpnII	GATC	2 cut(s)	292, 331
DrdI	GACNNNNNNGTC	1 cut(s)	34
DseDI	GACNNNNNNGTC	1 cut(s)	34
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Eco130I	CCWWGG	1 cut(s)	201
Eco32I	GATATC	1 cut(s)	310
EcoRII	CCWGG	3 cut(s)	240, 295, 325
EcoRV	GATATC	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	5 cut(s)	35, 67, 196, 255, 279
FaiI	YATR	5 cut(s)	33, 65, 194, 253, 277
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FatI	CATG	5 cut(s)	31, 63, 192, 251, 275
FbaI	TGATCA	1 cut(s)	331
HaeIII	GGCC	1 cut(s)	8
Hin1II	CATG	5 cut(s)	35, 67, 196, 255, 279
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	2 cut(s)	35, 302
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	2 cut(s)	81, 238
Hpy188I	TCNGA	3 cut(s)	165, 175, 307
Hpy188III	TCNNGA	3 cut(s)	64, 145, 316
Hpy8I	GTNNAC	2 cut(s)	81, 238
HpyCH4III	ACNGT	1 cut(s)	100
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 276
HpyF3I	CTNAG	3 cut(s)	164, 174, 281
Hsp92II	CATG	5 cut(s)	35, 67, 196, 255, 279
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	2 cut(s)	292, 331
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	6 cut(s)	34, 227, 254, 282, 309, 312
MalI	GATC	2 cut(s)	294, 333
MboI	GATC	2 cut(s)	292, 331
MboII	GAAGA	3 cut(s)	25, 37, 79
MlyI	GAGTC	1 cut(s)	44
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	3 cut(s)	168, 171, 290
MslI	CAYNNNNRTG	1 cut(s)	222
MspR9I	CCNGG	3 cut(s)	242, 297, 327
MvaI	CCWGG	3 cut(s)	242, 297, 327
MvnI	CGCG	1 cut(s)	270
MwoI	GCNNNNNNNGC	2 cut(s)	197, 276
NdeII	GATC	2 cut(s)	292, 331
NlaIII	CATG	5 cut(s)	35, 67, 196, 255, 279
NmeAIII	GCCGAG	1 cut(s)	66
NspI	RCATGY	1 cut(s)	255
PagI	TCATGA	1 cut(s)	63
PfeI	GAWTC	1 cut(s)	302
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
Psp6I	CCWGG	3 cut(s)	240, 295, 325
PspGI	CCWGG	3 cut(s)	240, 295, 325
RsaI	GTAC	4 cut(s)	80, 185, 247, 263
RsaNI	GTAC	4 cut(s)	79, 184, 246, 262
RseI	CAYNNNNRTG	1 cut(s)	222
Sau3AI	GATC	2 cut(s)	292, 331
ScaI	AGTACT	2 cut(s)	185, 263
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	3 cut(s)	242, 297, 327
SetI	ASST	5 cut(s)	122, 135, 207, 243, 301
SmiMI	CAYNNNNRTG	1 cut(s)	222
SsiI	CCGC	1 cut(s)	268
StyD4I	CCNGG	3 cut(s)	240, 295, 325
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	1 cut(s)	100
TaqI	TCGA	2 cut(s)	105, 146
TatI	WGTACW	3 cut(s)	78, 183, 261
TfiI	GAWTC	1 cut(s)	302
TscAI	CASTG	1 cut(s)	327
TspDTI	ATGAA	2 cut(s)	80, 203
TspRI	CASTG	1 cut(s)	327
XceI	RCATGY	1 cut(s)	255
ZrmI	AGTACT	2 cut(s)	185, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.