Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005319

Physical Location & Seq

Genomic Coordinates Reverse (-)

12292345 .. 12293418

Gene Structure 1074 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0091900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGTTACGATTGGTGGACGCAGCTGTCGCTAGGGCATCATATGCGAGCGCTTGCAATCGTGATGAAGACATGAAATCCTGGGACGCCGAAATCAAGAACATTGCCAAACGGGCCCTAGGAGGTTTGACGACTGCTATTACAGGTATTCCAATTGATACTGTGATTGATGTGACACATGAGGTGTTCAATTTGGGCCAGAAAATTCTCGACTCGGTACGCAAGGAAATCACGGGGGAGATGAGCATGCAAATGAAGGAACTCCATGATCTTTTACTCAAGGATTACATAACATTTAACTCCAAGATACAGGGTTTCCTTTCTGATTTGGAAATGTTTCTACAATCAGCTCGTGATAGGCATTCGTATATTGAAGATACGATTCAACAGTGTATCAATATGAAATCTGAGATGAGATTGCAGGACTTCAGGAATATTGCAGAGAAGTTGAGGACTCTAAAGGCTTCTTTTGCCTATGACTACTCTACTGAGAAACTGCTTGAAAAAGTTCAACATTTATTCCAGGAGCAGGAACAAATATTTGCCCGTGTGAAAGCCATAGTAAAACAACTTGAGGATGACAGGGCTCGTACTCTTTATTGGAGGAAGGTTGCGGATAAAATTTCAATGTCTATTGCTGCCTTTTTGCTTCTTGGCATAGTTGTGACAGCATGTATTGCTCCTCCAGCCGTTGTAGTAGGTTTCGCTGCTGGCACACTTGCAGTGTGTGCTGCAGGTACTTGGCTTTGCAGCATATATGAAGCATATGACCAAGCTTTTCTAGCTCAGCAGAACGCGATTAACTCAATCACCGGAGCGGAAAATTTGGTCTTTATGGAGTTGAACGATATCAAGCTGCTCATTGATAGGATTGAAAAGGAGATTAATGCACTTCTTGTAAGCGTAGACTTTGCAACAGGAGGCAATATAGGTTATGCCAAGAAGGACATGAAAACTAAGCTAGACAGATTTCTAAAGAAAATTGAGGAGTTGGAGGTGAAAACAGAGACATGCAGCTTCGTGGTTAAGAAAGAGAGGGAGGACCTTAGAAAAACATTGAAATCAATGTCTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

357

Amino Acids

40.35

Weight (kDa)

6.19

Isoelectric Point (pI)

34.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF677	PF05055	25 - 345	7.3e-26	Protein of unknown function (DUF677)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36240 AT1G77940 AT3G18740
fragaria_vesca	FvH4_5g28040 FvH4_5g38130 FvH4_7g04710
malus_domestica	MD08G1176600.v1.1 MD15G1363000.v1.1 MD15G1431500.v1.1
prunus_persica	Prupe.1G096700_v2.0.a1 Prupe.1G511000_v2.0.a1
pyrus_communis	pycom08g15150 pycom15g32500 pycom15g38130
rosa_chinensis	RchiOBHm_Chr6g0275411 RchiOBHm_Chr7g0240111
rosa_laevigata	RLG00000000705 RLG00000013464
rosa_multiflora	Rmu_sc0005008.1_g000029 Rmu_sc0007358.1_g000013
rosa_roxburghii	Rroxscaffold_3G00220410 Rroxscaffold_7G00193340
rosa_rugosa	Rorug06G0091900 Rorug07G0333300
rosa_samantha	Rh6BG208400 Rh6DG200900 Rh7AG486900
rosa_wichuraiana	Rw6G017820 Rw7G040800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	23
Acc36I	ACCTGC	1 cut(s)	722
AccBSI	CCGCTC	1 cut(s)	815
AccI	GTMKAC	1 cut(s)	903
AccII	CGCG	1 cut(s)	794
AciI	CCGC	2 cut(s)	611, 815
AcsI	RAATTY	3 cut(s)	201, 618, 820
AcuI	CTGAAG	1 cut(s)	409
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	3 cut(s)	216, 589, 736
AfeI	AGCGCT	1 cut(s)	49
AfiI	CCNNNNNNNGG	1 cut(s)	526
AgsI	TTSAA	9 cut(s)	187, 371, 383, 500, 509, 624, 841, 872, 1057
AjnI	CCWGG	2 cut(s)	77, 519
AluBI	AGCT	7 cut(s)	23, 347, 773, 782, 853, 958, 1014
AluI	AGCT	7 cut(s)	23, 347, 773, 782, 853, 958, 1014
Alw26I	GTCTC	1 cut(s)	998
Aor51HI	AGCGCT	1 cut(s)	49
AoxI	GGCC	2 cut(s)	111, 193
ApaI	GGGCCC	1 cut(s)	115
ApeKI	GCWGC	7 cut(s)	20, 635, 704, 728, 747, 853, 1011
ApoI	RAATTY	3 cut(s)	201, 618, 820
AseI	ATTAAT	1 cut(s)	882
Asp700I	GAANNNNTTC	2 cut(s)	333, 504
AspA2I	CCTAGG	1 cut(s)	115
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	4 cut(s)	111, 112, 193, 1039
AsuHPI	GGTGA	2 cut(s)	799, 1006
AvaII	GGWCC	1 cut(s)	1039
AvrII	CCTAGG	1 cut(s)	115
BaeGI	GKGCMC	1 cut(s)	115
BanII	GRGCYC	2 cut(s)	115, 586
BauI	CACGAG	1 cut(s)	348
BbsI	GAAGAC	1 cut(s)	72
BbvI	GCAGC	7 cut(s)	32, 622, 691, 715, 759, 840, 1023
BceAI	ACGGC	1 cut(s)	671
BciT130I	CCWGG	2 cut(s)	79, 521
BcoDI	GTCTC	1 cut(s)	998
BfaI	CTAG	4 cut(s)	30, 116, 779, 959
BfmI	CTRYAG	1 cut(s)	729
BfoI	RGCGCY	1 cut(s)	51
BfuAI	ACCTGC	1 cut(s)	722
BglI	GCCNNNNNGGC	1 cut(s)	110
BisI	GCNGC	7 cut(s)	21, 636, 705, 729, 748, 854, 1012
BlnI	CCTAGG	1 cut(s)	115
BlpI	GCTNAGC	1 cut(s)	783
BlsI	GCNGC	7 cut(s)	22, 637, 706, 730, 749, 855, 1013
Bme1390I	CCNGG	2 cut(s)	79, 521
Bme18I	GGWCC	1 cut(s)	1039
BmgT120I	GGNCC	4 cut(s)	111, 112, 193, 1039
BmiI	GGNNCC	1 cut(s)	113
BmrFI	CCNGG	2 cut(s)	79, 521
BmsI	GCATC	1 cut(s)	44
BpiI	GAAGAC	1 cut(s)	72
BpmI	CTGGAG	1 cut(s)	666
Bpu1102I	GCTNAGC	1 cut(s)	783
BpuEI	CTTGAG	2 cut(s)	260, 590
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	2 cut(s)	78, 115
BsaWI	WCCGGW	1 cut(s)	809
Bsc4I	CCNNNNNNNGG	1 cut(s)	526
Bse3DI	GCAATG	1 cut(s)	99
BseBI	CCWGG	2 cut(s)	79, 521
BseDI	CCNNGG	2 cut(s)	78, 115
BseGI	GGATG	1 cut(s)	580
BseLI	CCNNNNNNNGG	1 cut(s)	526
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	3 cut(s)	396, 477, 797
BseRI	GAGGAG	2 cut(s)	669, 998
BseSI	GKGCMC	1 cut(s)	115
BseXI	GCAGC	7 cut(s)	32, 622, 691, 715, 759, 840, 1023
Bsh1236I	CGCG	1 cut(s)	794
BshFI	GGCC	2 cut(s)	113, 195
BsiSI	CCGG	1 cut(s)	810
BslFI	GGGAC	1 cut(s)	95
BslI	CCNNNNNNNGG	1 cut(s)	526
BsmAI	GTCTC	1 cut(s)	998
BsmFI	GGGAC	1 cut(s)	95
BsmI	GAATGC	1 cut(s)	358
BsnI	GGCC	2 cut(s)	113, 195
Bsp120I	GGGCCC	1 cut(s)	111
Bsp1286I	GDGCHC	2 cut(s)	115, 586
Bsp143I	GATC	1 cut(s)	265
Bsp1720I	GCTNAGC	1 cut(s)	783
BspACI	CCGC	2 cut(s)	611, 815
BspANI	GGCC	2 cut(s)	113, 195
BspCNI	CTCAG	3 cut(s)	397, 478, 796
BspFNI	CGCG	1 cut(s)	794
BspLI	GGNNCC	1 cut(s)	113
BspMAI	CTGCAG	1 cut(s)	733
BspMI	ACCTGC	1 cut(s)	722
BsrBI	CCGCTC	1 cut(s)	815
BsrDI	GCAATG	1 cut(s)	99
BssECI	CCNNGG	2 cut(s)	78, 115
BssMI	GATC	1 cut(s)	265
BssNI	GRCGYC	1 cut(s)	84
BssSI	CACGAG	1 cut(s)	348
BssT1I	CCWWGG	1 cut(s)	115
Bst2BI	CACGAG	1 cut(s)	348
Bst2UI	CCWGG	2 cut(s)	79, 521
Bst4CI	ACNGT	2 cut(s)	160, 387
BstACI	GRCGYC	1 cut(s)	84
BstAPI	GCANNNNNTGC	3 cut(s)	41, 674, 725
BstC8I	GCNNGC	4 cut(s)	46, 52, 245, 709
BstDEI	CTNAG	5 cut(s)	405, 486, 783, 954, 1043
BstF5I	GGATG	1 cut(s)	580
BstFNI	CGCG	1 cut(s)	794
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	1 cut(s)	268
BstMAI	GTCTC	1 cut(s)	998
BstMBI	GATC	1 cut(s)	265
BstMWI	GCNNNNNNNGC	8 cut(s)	26, 41, 110, 467, 674, 683, 725, 779
BstNI	CCWGG	2 cut(s)	79, 521
BstNSI	RCATGY	3 cut(s)	247, 672, 1011
BstSCI	CCNGG	2 cut(s)	77, 519
BstSFI	CTRYAG	1 cut(s)	729
BstSLI	GKGCMC	1 cut(s)	115
BstUI	CGCG	1 cut(s)	794
BstV1I	GCAGC	7 cut(s)	32, 622, 691, 715, 759, 840, 1023
BstV2I	GAAGAC	1 cut(s)	72
BsuRI	GGCC	2 cut(s)	113, 195
BtsCI	GGATG	1 cut(s)	580
BtsI	GCAGTG	1 cut(s)	726
BtsIMutI	CAGTG	2 cut(s)	392, 726
BveI	ACCTGC	1 cut(s)	722
Cac8I	GCNNGC	4 cut(s)	46, 52, 245, 709
CfoI	GCGC	1 cut(s)	50
Cfr13I	GGNCC	4 cut(s)	111, 112, 193, 1039
CseI	GACGC	2 cut(s)	26, 92
Csp6I	GTAC	3 cut(s)	215, 588, 735
CviAII	CATG	7 cut(s)	70, 176, 244, 263, 669, 946, 1008
CviQI	GTAC	3 cut(s)	215, 588, 735
DdeI	CTNAG	5 cut(s)	405, 486, 783, 954, 1043
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
DrdI	GACNNNNNNGTC	1 cut(s)	23
DseDI	GACNNNNNNGTC	1 cut(s)	23
Eco130I	CCWWGG	1 cut(s)	115
Eco24I	GRGCYC	2 cut(s)	115, 586
Eco32I	GATATC	1 cut(s)	847
Eco47I	GGWCC	1 cut(s)	1039
Eco47III	AGCGCT	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	409
EcoO109I	RGGNCCY	2 cut(s)	112, 1039
EcoRII	CCWGG	2 cut(s)	77, 519
EcoRV	GATATC	1 cut(s)	847
EcoT14I	CCWWGG	1 cut(s)	115
EcoT38I	GRGCYC	2 cut(s)	115, 586
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	7 cut(s)	73, 179, 247, 266, 672, 949, 1011
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	7 cut(s)	69, 175, 243, 262, 668, 945, 1007
FauNDI	CATATG	2 cut(s)	40, 763
FblI	GTMKAC	1 cut(s)	903
Fnu4HI	GCNGC	7 cut(s)	21, 636, 705, 729, 748, 854, 1012
FokI	GGATG	1 cut(s)	587
FriOI	GRGCYC	2 cut(s)	115, 586
Fsp4HI	GCNGC	7 cut(s)	21, 636, 705, 729, 748, 854, 1012
FspBI	CTAG	4 cut(s)	30, 116, 779, 959
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	7 cut(s)	21, 636, 705, 729, 748, 854, 1012
GsuI	CTGGAG	1 cut(s)	666
HaeII	RGCGCY	1 cut(s)	51
HaeIII	GGCC	2 cut(s)	113, 195
HapII	CCGG	1 cut(s)	810
HgaI	GACGC	2 cut(s)	26, 92
HhaI	GCGC	1 cut(s)	50
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	7 cut(s)	73, 179, 247, 266, 672, 949, 1011
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HindIII	AAGCTT	1 cut(s)	771
HinfI	GANTC	3 cut(s)	209, 379, 451
HpaII	CCGG	1 cut(s)	810
HphI	GGTGA	2 cut(s)	799, 1006
Hpy166II	GTNNAC	2 cut(s)	16, 904
Hpy188I	TCNGA	2 cut(s)	322, 406
Hpy188III	TCNNGA	5 cut(s)	59, 94, 206, 350, 427
Hpy8I	GTNNAC	2 cut(s)	16, 904
HpyAV	CCTTC	3 cut(s)	247, 598, 934
HpyCH4III	ACNGT	2 cut(s)	160, 387
HpyF10VI	GCNNNNNNNGC	8 cut(s)	26, 41, 110, 467, 674, 683, 725, 779
HpyF3I	CTNAG	5 cut(s)	405, 486, 783, 954, 1043
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	7 cut(s)	73, 179, 247, 266, 672, 949, 1011
HspAI	GCGC	1 cut(s)	48
Kzo9I	GATC	1 cut(s)	265
LmnI	GCTCC	3 cut(s)	523, 682, 812
Lsp1109I	GCAGC	7 cut(s)	32, 622, 691, 715, 759, 840, 1023
LweI	GCATC	1 cut(s)	44
MaeI	CTAG	4 cut(s)	30, 116, 779, 959
MaeIII	GTNAC	3 cut(s)	3, 169, 661
MalI	GATC	1 cut(s)	267
MbiI	CCGCTC	1 cut(s)	815
MboI	GATC	1 cut(s)	265
MboII	GAAGA	2 cut(s)	77, 383
MfeI	CAATTG	1 cut(s)	150
MhlI	GDGCHC	2 cut(s)	115, 586
MluCI	AATT	6 cut(s)	150, 187, 201, 618, 820, 978
MlyI	GAGTC	2 cut(s)	203, 445
MmeI	TCCRAC	1 cut(s)	969
MroXI	GAANNNNTTC	2 cut(s)	333, 504
MseI	TTAA	4 cut(s)	294, 798, 882, 1023
MslI	CAYNNNNRTG	2 cut(s)	248, 659
MspA1I	CMGCKG	1 cut(s)	23
MspI	CCGG	1 cut(s)	810
MspR9I	CCNGG	2 cut(s)	79, 521
MunI	CAATTG	1 cut(s)	150
Mva1269I	GAATGC	1 cut(s)	358
MvaI	CCWGG	2 cut(s)	79, 521
MvnI	CGCG	1 cut(s)	794
MwoI	GCNNNNNNNGC	8 cut(s)	26, 41, 110, 467, 674, 683, 725, 779
NdeI	CATATG	2 cut(s)	40, 763
NdeII	GATC	1 cut(s)	265
NlaIII	CATG	7 cut(s)	73, 179, 247, 266, 672, 949, 1011
NlaIV	GGNNCC	1 cut(s)	113
NmuCI	GTSAC	2 cut(s)	169, 661
NspI	RCATGY	3 cut(s)	247, 672, 1011
PaeI	GCATGC	1 cut(s)	247
PctI	GAATGC	1 cut(s)	358
PdmI	GAANNNNTTC	2 cut(s)	333, 504
PfeI	GAWTC	1 cut(s)	379
PfoI	TCCNGGA	1 cut(s)	519
PkrI	GCNGC	7 cut(s)	22, 637, 706, 730, 749, 855, 1013
PleI	GAGTC	2 cut(s)	203, 445
PpsI	GAGTC	2 cut(s)	203, 445
PpuMI	RGGWCCY	1 cut(s)	1039
PshBI	ATTAAT	1 cut(s)	882
Psp5II	RGGWCCY	1 cut(s)	1039
Psp6I	CCWGG	2 cut(s)	77, 519
PspGI	CCWGG	2 cut(s)	77, 519
PspN4I	GGNNCC	1 cut(s)	113
PspOMI	GGGCCC	1 cut(s)	111
PspPI	GGNCC	4 cut(s)	111, 112, 193, 1039
PspPPI	RGGWCCY	1 cut(s)	1039
PstI	CTGCAG	1 cut(s)	733
PvuII	CAGCTG	1 cut(s)	23
RsaI	GTAC	3 cut(s)	216, 589, 736
RsaNI	GTAC	3 cut(s)	215, 588, 735
RseI	CAYNNNNRTG	2 cut(s)	248, 659
SaqAI	TTAA	4 cut(s)	294, 798, 882, 1023
SatI	GCNGC	7 cut(s)	21, 636, 705, 729, 748, 854, 1012
Sau3AI	GATC	1 cut(s)	265
Sau96I	GGNCC	4 cut(s)	111, 112, 193, 1039
SchI	GAGTC	2 cut(s)	203, 445
ScrFI	CCNGG	2 cut(s)	79, 521
SduI	GDGCHC	2 cut(s)	115, 586
SfaNI	GCATC	1 cut(s)	44
SfcI	CTRYAG	1 cut(s)	729
SinI	GGWCC	1 cut(s)	1039
SmiMI	CAYNNNNRTG	2 cut(s)	248, 659
SmlI	CTYRAG	2 cut(s)	275, 569
SmoI	CTYRAG	2 cut(s)	275, 569
SphI	GCATGC	1 cut(s)	247
Sse9I	AATT	6 cut(s)	150, 187, 201, 618, 820, 978
SsiI	CCGC	2 cut(s)	611, 815
SspI	AATATT	2 cut(s)	433, 537
SspMI	CTAG	4 cut(s)	30, 116, 779, 959
StyD4I	CCNGG	2 cut(s)	77, 519
StyI	CCWWGG	1 cut(s)	115
TaaI	ACNGT	2 cut(s)	160, 387
TaqI	TCGA	1 cut(s)	207
TasI	AATT	6 cut(s)	150, 187, 201, 618, 820, 978
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	4 cut(s)	294, 798, 882, 1023
Tru9I	TTAA	4 cut(s)	294, 798, 882, 1023
TscAI	CASTG	2 cut(s)	392, 726
TseFI	GTSAC	2 cut(s)	169, 661
TseI	GCWGC	7 cut(s)	20, 635, 704, 728, 747, 853, 1011
Tsp45I	GTSAC	2 cut(s)	169, 661
TspDTI	ATGAA	6 cut(s)	78, 86, 266, 413, 771, 962
TspRI	CASTG	2 cut(s)	392, 726
VpaK11BI	GGWCC	1 cut(s)	1039
VspI	ATTAAT	1 cut(s)	882
XapI	RAATTY	3 cut(s)	201, 618, 820
XceI	RCATGY	3 cut(s)	247, 672, 1011
XmaJI	CCTAGG	1 cut(s)	115
XmiI	GTMKAC	1 cut(s)	903
XmnI	GAANNNNTTC	2 cut(s)	333, 504
XspI	CTAG	4 cut(s)	30, 116, 779, 959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.