Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0005319

Physical Location & Seq

Genomic Coordinates Forward (+)

5176141 .. 5177936

Gene Structure 1796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g04710.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGAGTCTCCTCTTATTAATACCCCAAAACCCTAACAAAACGCTTTCGTTGTTTCTGGGTTGGCGGCACAACAAGGAAGAAGATTCAACCTCAACCATGGTGGCTGTGAAGAAAACGAAGAAGACCCATGAGTCTATCAACAACAGGCTCGCTCTGGTGATGAAGAGTGGCAAGTTCACTCTGGGTTACAAGACCGTCATCGACACTCTCCGTAACTCCAAAGGGAAGCTCATTATAATCTCCAACAATTGCCCTCCTCTCAGAAAGTCCGAGATCGAGTACTACGCCATGCTTGCCAAGGTTGGAGTTCATCACTACAATGGAAACAATGTTGACCTGGGTACTGCATGTGGCAAGTATTTCCGAGTGTCGTGCCTTAGCATCATTGATCCTGGTGATTCGGATATCATCAAGACACTGCCTGGTGATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

145

Amino Acids

16.04

Weight (kDa)

9.49

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	45 - 137	8.6e-24	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36240 AT1G77940 AT3G18740
fragaria_vesca	FvH4_5g28040 FvH4_5g38130 FvH4_7g04710
malus_domestica	MD08G1176600.v1.1 MD15G1363000.v1.1 MD15G1431500.v1.1
prunus_persica	Prupe.1G096700_v2.0.a1 Prupe.1G511000_v2.0.a1
pyrus_communis	pycom08g15150 pycom15g32500 pycom15g38130
rosa_chinensis	RchiOBHm_Chr6g0275411 RchiOBHm_Chr7g0240111
rosa_laevigata	RLG00000000705 RLG00000013464
rosa_multiflora	Rmu_sc0005008.1_g000029 Rmu_sc0007358.1_g000013
rosa_roxburghii	Rroxscaffold_3G00220410 Rroxscaffold_7G00193340
rosa_rugosa	Rorug06G0091900 Rorug07G0333300
rosa_samantha	Rh6BG208400 Rh6DG200900 Rh7AG486900
rosa_wichuraiana	Rw6G017820 Rw7G040800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	236
AasI	GACNNNNNNGTC	1 cut(s)	130
AciI	CCGC	1 cut(s)	64
AclWI	GGATC	1 cut(s)	383
AfaI	GTAC	2 cut(s)	281, 343
AgsI	TTSAA	1 cut(s)	87
AjnI	CCWGG	3 cut(s)	336, 391, 421
AluBI	AGCT	1 cut(s)	229
AluI	AGCT	1 cut(s)	229
Alw26I	GTCTC	1 cut(s)	11
AlwI	GGATC	1 cut(s)	383
AseI	ATTAAT	1 cut(s)	17
AsuHPI	GGTGA	2 cut(s)	169, 407
BbsI	GAAGAC	1 cut(s)	128
BcgI	CGANNNNNNTGC	2 cut(s)	354, 388
BciT130I	CCWGG	3 cut(s)	338, 393, 423
BclI	TGATCA	1 cut(s)	427
BcoDI	GTCTC	1 cut(s)	11
BisI	GCNGC	1 cut(s)	65
BlsI	GCNGC	1 cut(s)	66
BmcAI	AGTACT	1 cut(s)	281
Bme1390I	CCNGG	3 cut(s)	338, 393, 423
BmrFI	CCNGG	3 cut(s)	338, 393, 423
BmsI	GCATC	1 cut(s)	390
BpiI	GAAGAC	1 cut(s)	128
Bpu10I	CCTNAGC	1 cut(s)	377
BsaJI	CCNNGG	3 cut(s)	96, 297, 337
BseBI	CCWGG	3 cut(s)	338, 393, 423
BseDI	CCNNGG	3 cut(s)	96, 297, 337
BseMII	CTCAG	1 cut(s)	274
BseRI	GAGGAG	1 cut(s)	246
BsmAI	GTCTC	1 cut(s)	11
Bsp143I	GATC	3 cut(s)	273, 388, 427
Bsp19I	CCATGG	1 cut(s)	96
BspACI	CCGC	1 cut(s)	64
BspCNI	CTCAG	1 cut(s)	273
BspPI	GGATC	1 cut(s)	383
BssECI	CCNNGG	3 cut(s)	96, 297, 337
BssMI	GATC	3 cut(s)	273, 388, 427
BssT1I	CCWWGG	2 cut(s)	96, 297
Bst2UI	CCWGG	3 cut(s)	338, 393, 423
Bst4CI	ACNGT	1 cut(s)	196
Bst6I	CTCTTC	1 cut(s)	158
BstC8I	GCNNGC	2 cut(s)	150, 294
BstDEI	CTNAG	2 cut(s)	260, 377
BstDSI	CCRYGG	1 cut(s)	96
BstKTI	GATC	3 cut(s)	276, 391, 430
BstMAI	GTCTC	1 cut(s)	11
BstMBI	GATC	3 cut(s)	273, 388, 427
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstNI	CCWGG	3 cut(s)	338, 393, 423
BstNSI	RCATGY	1 cut(s)	351
BstSCI	CCNGG	3 cut(s)	336, 391, 421
BstV2I	GAAGAC	1 cut(s)	128
BtgI	CCRYGG	1 cut(s)	96
BtsI	GCAGTG	1 cut(s)	416
BtsIMutI	CAGTG	1 cut(s)	416
Cac8I	GCNNGC	2 cut(s)	150, 294
Csp6I	GTAC	2 cut(s)	280, 342
CspCI	CAANNNNNGTGG	2 cut(s)	81, 116
CviAII	CATG	4 cut(s)	97, 128, 289, 348
CviJI	RGCY	3 cut(s)	104, 148, 229
CviKI_1	RGCY	3 cut(s)	104, 148, 229
CviQI	GTAC	2 cut(s)	280, 342
DdeI	CTNAG	2 cut(s)	260, 377
DpnI	GATC	3 cut(s)	275, 390, 429
DpnII	GATC	3 cut(s)	273, 388, 427
DrdI	GACNNNNNNGTC	1 cut(s)	130
DseDI	GACNNNNNNGTC	1 cut(s)	130
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Eco130I	CCWWGG	2 cut(s)	96, 297
Eco32I	GATATC	1 cut(s)	406
EcoRII	CCWGG	3 cut(s)	336, 391, 421
EcoRV	GATATC	1 cut(s)	406
EcoT14I	CCWWGG	2 cut(s)	96, 297
ErhI	CCWWGG	2 cut(s)	96, 297
FaeI	CATG	4 cut(s)	100, 131, 292, 351
FaiI	YATR	5 cut(s)	98, 129, 236, 290, 349
FatI	CATG	4 cut(s)	96, 127, 288, 347
FbaI	TGATCA	1 cut(s)	427
Fnu4HI	GCNGC	1 cut(s)	65
Fsp4HI	GCNGC	1 cut(s)	65
GluI	GCNGC	1 cut(s)	65
Hin1II	CATG	4 cut(s)	100, 131, 292, 351
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HinfI	GANTC	4 cut(s)	4, 83, 131, 398
HphI	GGTGA	2 cut(s)	169, 407
Hpy166II	GTNNAC	2 cut(s)	177, 334
Hpy188I	TCNGA	4 cut(s)	263, 271, 365, 403
Hpy188III	TCNNGA	1 cut(s)	412
Hpy8I	GTNNAC	2 cut(s)	177, 334
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4V	TGCA	1 cut(s)	347
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	2 cut(s)	260, 377
Hsp92II	CATG	4 cut(s)	100, 131, 292, 351
Ksp22I	TGATCA	1 cut(s)	427
Kzo9I	GATC	3 cut(s)	273, 388, 427
LpnPI	CCDG	9 cut(s)	41, 130, 140, 167, 323, 350, 378, 405, 408
LweI	GCATC	1 cut(s)	390
MaeIII	GTNAC	2 cut(s)	185, 212
MalI	GATC	3 cut(s)	275, 390, 429
MboI	GATC	3 cut(s)	273, 388, 427
MboII	GAAGA	6 cut(s)	89, 92, 121, 130, 133, 175
MfeI	CAATTG	1 cut(s)	247
MluCI	AATT	1 cut(s)	247
MlyI	GAGTC	2 cut(s)	13, 140
MmeI	TCCRAC	2 cut(s)	267, 283
MnlI	CCTC	4 cut(s)	20, 100, 264, 267
MseI	TTAA	1 cut(s)	17
MslI	CAYNNNNRTG	1 cut(s)	318
MspR9I	CCNGG	3 cut(s)	338, 393, 423
MunI	CAATTG	1 cut(s)	247
MvaI	CCWGG	3 cut(s)	338, 393, 423
MwoI	GCNNNNNNNGC	1 cut(s)	293
NcoI	CCATGG	1 cut(s)	96
NdeII	GATC	3 cut(s)	273, 388, 427
NlaIII	CATG	4 cut(s)	100, 131, 292, 351
NspI	RCATGY	1 cut(s)	351
PfeI	GAWTC	2 cut(s)	83, 398
PkrI	GCNGC	1 cut(s)	66
PleI	GAGTC	2 cut(s)	12, 139
PpsI	GAGTC	2 cut(s)	12, 139
PshBI	ATTAAT	1 cut(s)	17
PsiI	TTATAA	1 cut(s)	236
Psp6I	CCWGG	3 cut(s)	336, 391, 421
PspGI	CCWGG	3 cut(s)	336, 391, 421
RsaI	GTAC	2 cut(s)	281, 343
RsaNI	GTAC	2 cut(s)	280, 342
RseI	CAYNNNNRTG	1 cut(s)	318
SaqAI	TTAA	1 cut(s)	17
SatI	GCNGC	1 cut(s)	65
Sau3AI	GATC	3 cut(s)	273, 388, 427
ScaI	AGTACT	1 cut(s)	281
SchI	GAGTC	2 cut(s)	13, 140
ScrFI	CCNGG	3 cut(s)	338, 393, 423
SetI	ASST	4 cut(s)	92, 231, 303, 339
SfaNI	GCATC	1 cut(s)	390
SmiMI	CAYNNNNRTG	1 cut(s)	318
Sse9I	AATT	1 cut(s)	247
SsiI	CCGC	1 cut(s)	64
StyD4I	CCNGG	3 cut(s)	336, 391, 421
StyI	CCWWGG	2 cut(s)	96, 297
TaaI	ACNGT	1 cut(s)	196
TaqI	TCGA	2 cut(s)	201, 276
TasI	AATT	1 cut(s)	247
TatI	WGTACW	1 cut(s)	279
TauI	GCSGC	1 cut(s)	67
TfiI	GAWTC	2 cut(s)	83, 398
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TscAI	CASTG	1 cut(s)	423
TspDTI	ATGAA	2 cut(s)	176, 299
TspGWI	ACGGA	1 cut(s)	200
TspRI	CASTG	1 cut(s)	423
VspI	ATTAAT	1 cut(s)	17
XceI	RCATGY	1 cut(s)	351
ZrmI	AGTACT	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.