Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005319

Physical Location & Seq

Genomic Coordinates Reverse (-)

37201474 .. 37203231

Gene Structure 1758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24710

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGTTGCCGTGAAGAAAACGAAGAAGACCCATGAGAGCATCAACAACAGGCTCGCTCTCGTCATGAAGAGTGGCAAATACACTCTCGGTTACAAAACCGTCATCGACTCTCTTCGCAGCTCCAAGGGGAAGCTGATCATAATCTCCAACAACTGCCCCCCTCTCCGCAAGTCCGAGATCGAATACTACGCCATGCTTGCCAAGGTTGGGGTCCACCACTACAATGGAAACAATGTTGATCTGGGGACAGCATGTGGAAAGTACTTCCGTGTTTCATGCCTCAGCATTATTGATCCAGGTGATTCGGATATTATCAAGTCGCTGCCTGGTGATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

112

Amino Acids

12.33

Weight (kDa)

9.52

Isoelectric Point (pI)

40.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	13 - 105	1.4e-24	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36240 AT1G77940 AT3G18740
fragaria_vesca	FvH4_5g28040 FvH4_5g38130 FvH4_7g04710
malus_domestica	MD08G1176600.v1.1 MD15G1363000.v1.1 MD15G1431500.v1.1
prunus_persica	Prupe.1G096700_v2.0.a1 Prupe.1G511000_v2.0.a1
pyrus_communis	pycom08g15150 pycom15g32500 pycom15g38130
rosa_chinensis	RchiOBHm_Chr6g0275411 RchiOBHm_Chr7g0240111
rosa_laevigata	RLG00000000705 RLG00000013464
rosa_multiflora	Rmu_sc0005008.1_g000029 Rmu_sc0007358.1_g000013
rosa_roxburghii	Rroxscaffold_3G00220410 Rroxscaffold_7G00193340
rosa_rugosa	Rorug06G0091900 Rorug07G0333300
rosa_samantha	Rh6BG208400 Rh6DG200900 Rh7AG486900
rosa_wichuraiana	Rw6G017820 Rw7G040800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	166
AclWI	GGATC	1 cut(s)	287
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	1 cut(s)	207
AjnI	CCWGG	2 cut(s)	295, 325
AluBI	AGCT	2 cut(s)	120, 133
AluI	AGCT	2 cut(s)	120, 133
AlwI	GGATC	1 cut(s)	287
ApeKI	GCWGC	2 cut(s)	117, 322
AspS9I	GGNCC	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	311
AvaII	GGWCC	1 cut(s)	211
BbsI	GAAGAC	1 cut(s)	32
BbvCI	CCTCAGC	1 cut(s)	281
BbvI	GCAGC	2 cut(s)	129, 309
BciT130I	CCWGG	2 cut(s)	297, 327
BclI	TGATCA	2 cut(s)	135, 331
BisI	GCNGC	2 cut(s)	118, 323
BlsI	GCNGC	2 cut(s)	119, 324
BmcAI	AGTACT	1 cut(s)	263
Bme1390I	CCNGG	2 cut(s)	297, 327
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	212
BmrFI	CCNGG	2 cut(s)	297, 327
BmsI	GCATC	1 cut(s)	48
BpiI	GAAGAC	1 cut(s)	32
Bpu10I	CCTNAGC	1 cut(s)	281
BsaBI	GATNNNNATC	1 cut(s)	140
BsaJI	CCNNGG	2 cut(s)	123, 201
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
Bse8I	GATNNNNATC	1 cut(s)	140
BseBI	CCWGG	2 cut(s)	297, 327
BseDI	CCNNGG	2 cut(s)	123, 201
BseJI	GATNNNNATC	1 cut(s)	140
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseMII	CTCAG	1 cut(s)	295
BseXI	GCAGC	2 cut(s)	129, 309
BslFI	GGGAC	1 cut(s)	259
BslI	CCNNNNNNNGG	1 cut(s)	207
BsmFI	GGGAC	1 cut(s)	259
Bsp143I	GATC	5 cut(s)	135, 177, 238, 292, 331
BspACI	CCGC	1 cut(s)	166
BspCNI	CTCAG	1 cut(s)	294
BspHI	TCATGA	1 cut(s)	63
BspLI	GGNNCC	1 cut(s)	212
BspPI	GGATC	1 cut(s)	287
BssECI	CCNNGG	2 cut(s)	123, 201
BssMI	GATC	5 cut(s)	135, 177, 238, 292, 331
BssT1I	CCWWGG	2 cut(s)	123, 201
Bst2UI	CCWGG	2 cut(s)	297, 327
Bst4CI	ACNGT	1 cut(s)	100
Bst6I	CTCTTC	2 cut(s)	62, 117
BstC8I	GCNNGC	2 cut(s)	54, 198
BstDEI	CTNAG	1 cut(s)	281
BstKTI	GATC	5 cut(s)	138, 180, 241, 295, 334
BstMBI	GATC	5 cut(s)	135, 177, 238, 292, 331
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNI	CCWGG	2 cut(s)	297, 327
BstNSI	RCATGY	1 cut(s)	255
BstSCI	CCNGG	2 cut(s)	295, 325
BstV1I	GCAGC	2 cut(s)	129, 309
BstV2I	GAAGAC	1 cut(s)	32
BstXI	CCANNNNNNTGG	1 cut(s)	224
Cac8I	GCNNGC	2 cut(s)	54, 198
CciI	TCATGA	1 cut(s)	63
Cfr13I	GGNCC	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	5 cut(s)	32, 64, 193, 252, 276
CviJI	RGCY	3 cut(s)	52, 120, 133
CviKI_1	RGCY	3 cut(s)	52, 120, 133
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	1 cut(s)	281
DpnI	GATC	5 cut(s)	137, 179, 240, 294, 333
DpnII	GATC	5 cut(s)	135, 177, 238, 292, 331
Eam1104I	CTCTTC	2 cut(s)	62, 117
EarI	CTCTTC	2 cut(s)	62, 117
Eco130I	CCWWGG	2 cut(s)	123, 201
Eco47I	GGWCC	1 cut(s)	211
EcoRII	CCWGG	2 cut(s)	295, 325
EcoT14I	CCWWGG	2 cut(s)	123, 201
ErhI	CCWWGG	2 cut(s)	123, 201
FaeI	CATG	5 cut(s)	35, 67, 196, 255, 279
FaiI	YATR	6 cut(s)	33, 65, 140, 194, 253, 277
FaqI	GGGAC	1 cut(s)	259
FatI	CATG	5 cut(s)	31, 63, 192, 251, 275
FbaI	TGATCA	2 cut(s)	135, 331
Fnu4HI	GCNGC	2 cut(s)	118, 323
Fsp4HI	GCNGC	2 cut(s)	118, 323
GluI	GCNGC	2 cut(s)	118, 323
Hin1II	CATG	5 cut(s)	35, 67, 196, 255, 279
HinfI	GANTC	2 cut(s)	107, 302
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	2 cut(s)	175, 307
Hpy188III	TCNNGA	1 cut(s)	64
Hpy8I	GTNNAC	1 cut(s)	214
HpyCH4III	ACNGT	1 cut(s)	100
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	1 cut(s)	281
Hsp92II	CATG	5 cut(s)	35, 67, 196, 255, 279
Ksp22I	TGATCA	2 cut(s)	135, 331
Kzo9I	GATC	5 cut(s)	135, 177, 238, 292, 331
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	5 cut(s)	34, 227, 282, 309, 312
Lsp1109I	GCAGC	2 cut(s)	129, 309
LweI	GCATC	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	89
MalI	GATC	5 cut(s)	137, 179, 240, 294, 333
MboI	GATC	5 cut(s)	135, 177, 238, 292, 331
MboII	GAAGA	5 cut(s)	25, 34, 37, 79, 104
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	2 cut(s)	171, 290
MslI	CAYNNNNRTG	1 cut(s)	222
MspR9I	CCNGG	2 cut(s)	297, 327
MvaI	CCWGG	2 cut(s)	297, 327
MwoI	GCNNNNNNNGC	1 cut(s)	197
NdeII	GATC	5 cut(s)	135, 177, 238, 292, 331
NlaIII	CATG	5 cut(s)	35, 67, 196, 255, 279
NlaIV	GGNNCC	1 cut(s)	212
NspI	RCATGY	1 cut(s)	255
PagI	TCATGA	1 cut(s)	63
PfeI	GAWTC	1 cut(s)	302
PkrI	GCNGC	2 cut(s)	119, 324
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
Psp6I	CCWGG	2 cut(s)	295, 325
PspGI	CCWGG	2 cut(s)	295, 325
PspN4I	GGNNCC	1 cut(s)	212
PspPI	GGNCC	1 cut(s)	211
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
RseI	CAYNNNNRTG	1 cut(s)	222
SatI	GCNGC	2 cut(s)	118, 323
Sau3AI	GATC	5 cut(s)	135, 177, 238, 292, 331
Sau96I	GGNCC	1 cut(s)	211
ScaI	AGTACT	1 cut(s)	263
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	2 cut(s)	297, 327
SetI	ASST	4 cut(s)	122, 135, 207, 301
SfaNI	GCATC	1 cut(s)	48
SinI	GGWCC	1 cut(s)	211
SmiMI	CAYNNNNRTG	1 cut(s)	222
SsiI	CCGC	1 cut(s)	166
StyD4I	CCNGG	2 cut(s)	295, 325
StyI	CCWWGG	2 cut(s)	123, 201
TaaI	ACNGT	1 cut(s)	100
TaqI	TCGA	2 cut(s)	105, 180
TatI	WGTACW	1 cut(s)	261
TfiI	GAWTC	1 cut(s)	302
TseI	GCWGC	2 cut(s)	117, 322
TspDTI	ATGAA	2 cut(s)	80, 264
TspGWI	ACGGA	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	211
XceI	RCATGY	1 cut(s)	255
XcmI	CCANNNNNNNNNTGG	1 cut(s)	221
ZrmI	AGTACT	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.