Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005008.1

Orthogroup ID

OG0005319

Physical Location & Seq

Genomic Coordinates Reverse (-)

116387 .. 117789

Gene Structure 1403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005008.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

atggtggctgtgaagaaaaccaagaagacccatgagtctatcaacaacaggctcgctctcgtcatgaagagtggcaagtacactctgggctacaagaccgtcatcgacactcttcgtagctccaaagggaagctgattataatctcgaacaattgccctcctctgagaaagtcggagatcgagtactacgccatgcttgctaaggttggagttcatcactacaatggaaacaatgttgacctcggtacagcatgtggcaagtatttccgagtgtcgtgccttagcattattgatccaggtgattcggatatcatcaagacactgcccggtgatcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

112

Amino Acids

12.36

Weight (kDa)

9.52

Isoelectric Point (pI)

37.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36240 AT1G77940 AT3G18740
fragaria_vesca	FvH4_5g28040 FvH4_5g38130 FvH4_7g04710
malus_domestica	MD08G1176600.v1.1 MD15G1363000.v1.1 MD15G1431500.v1.1
prunus_persica	Prupe.1G096700_v2.0.a1 Prupe.1G511000_v2.0.a1
pyrus_communis	pycom08g15150 pycom15g32500 pycom15g38130
rosa_chinensis	RchiOBHm_Chr6g0275411 RchiOBHm_Chr7g0240111
rosa_laevigata	RLG00000000705 RLG00000013464
rosa_multiflora	Rmu_sc0005008.1_g000029 Rmu_sc0007358.1_g000013
rosa_roxburghii	Rroxscaffold_3G00220410 Rroxscaffold_7G00193340
rosa_rugosa	Rorug06G0091900 Rorug07G0333300
rosa_samantha	Rh6BG208400 Rh6DG200900 Rh7AG486900
rosa_wichuraiana	Rw6G017820 Rw7G040800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	140
AasI	GACNNNNNNGTC	1 cut(s)	34
AclWI	GGATC	1 cut(s)	287
AfaI	GTAC	3 cut(s)	80, 185, 247
AjnI	CCWGG	1 cut(s)	295
AluBI	AGCT	2 cut(s)	120, 133
AluI	AGCT	2 cut(s)	120, 133
AlwI	GGATC	1 cut(s)	287
AsuC2I	CCSGG	1 cut(s)	327
AsuHPI	GGTGA	1 cut(s)	311
BbsI	GAAGAC	1 cut(s)	32
BcgI	CGANNNNNNTGC	2 cut(s)	258, 292
BciT130I	CCWGG	1 cut(s)	297
BclI	TGATCA	1 cut(s)	331
BcnI	CCSGG	1 cut(s)	327
BmcAI	AGTACT	1 cut(s)	185
Bme1390I	CCNGG	2 cut(s)	297, 327
BmrFI	CCNGG	2 cut(s)	297, 327
BpiI	GAAGAC	1 cut(s)	32
Bpu10I	CCTNAGC	2 cut(s)	201, 281
BpuMI	CCSGG	1 cut(s)	327
BsaBI	GATNNNNATC	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	241
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bse8I	GATNNNNATC	1 cut(s)	140
BseBI	CCWGG	1 cut(s)	297
BseDI	CCNNGG	1 cut(s)	241
BseJI	GATNNNNATC	1 cut(s)	140
BseMII	CTCAG	1 cut(s)	155
BseRI	GAGGAG	1 cut(s)	150
BsiSI	CCGG	1 cut(s)	327
Bsp143I	GATC	3 cut(s)	177, 292, 331
BspCNI	CTCAG	1 cut(s)	156
BspHI	TCATGA	1 cut(s)	63
BspPI	GGATC	1 cut(s)	287
BssECI	CCNNGG	1 cut(s)	241
BssMI	GATC	3 cut(s)	177, 292, 331
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	1 cut(s)	100
Bst6I	CTCTTC	2 cut(s)	62, 117
BstC8I	GCNNGC	2 cut(s)	54, 198
BstDEI	CTNAG	3 cut(s)	164, 201, 281
BstKTI	GATC	3 cut(s)	180, 295, 334
BstMBI	GATC	3 cut(s)	177, 292, 331
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNI	CCWGG	1 cut(s)	297
BstNSI	RCATGY	1 cut(s)	255
BstSCI	CCNGG	2 cut(s)	295, 325
BstV2I	GAAGAC	1 cut(s)	32
BtsI	GCAGTG	1 cut(s)	320
BtsIMutI	CAGTG	1 cut(s)	320
Cac8I	GCNNGC	2 cut(s)	54, 198
CciI	TCATGA	1 cut(s)	63
Csp6I	GTAC	3 cut(s)	79, 184, 246
CviAII	CATG	4 cut(s)	32, 64, 193, 252
CviJI	RGCY	5 cut(s)	8, 52, 90, 120, 133
CviKI_1	RGCY	5 cut(s)	8, 52, 90, 120, 133
CviQI	GTAC	3 cut(s)	79, 184, 246
DdeI	CTNAG	3 cut(s)	164, 201, 281
DpnI	GATC	3 cut(s)	179, 294, 333
DpnII	GATC	3 cut(s)	177, 292, 331
DrdI	GACNNNNNNGTC	1 cut(s)	34
DseDI	GACNNNNNNGTC	1 cut(s)	34
Eam1104I	CTCTTC	2 cut(s)	62, 117
EarI	CTCTTC	2 cut(s)	62, 117
Eco32I	GATATC	1 cut(s)	310
EcoRII	CCWGG	1 cut(s)	295
EcoRV	GATATC	1 cut(s)	310
FaeI	CATG	4 cut(s)	35, 67, 196, 255
FaiI	YATR	5 cut(s)	33, 65, 140, 194, 253
FatI	CATG	4 cut(s)	31, 63, 192, 251
FbaI	TGATCA	1 cut(s)	331
HapII	CCGG	1 cut(s)	327
Hin1II	CATG	4 cut(s)	35, 67, 196, 255
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HinfI	GANTC	2 cut(s)	35, 302
HpaII	CCGG	1 cut(s)	327
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	2 cut(s)	81, 238
Hpy188I	TCNGA	4 cut(s)	165, 175, 269, 307
Hpy188III	TCNNGA	3 cut(s)	64, 145, 316
Hpy8I	GTNNAC	2 cut(s)	81, 238
HpyCH4III	ACNGT	1 cut(s)	100
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	3 cut(s)	164, 201, 281
Hsp92II	CATG	4 cut(s)	35, 67, 196, 255
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	3 cut(s)	177, 292, 331
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	4 cut(s)	34, 71, 282, 309
MalI	GATC	3 cut(s)	179, 294, 333
MboI	GATC	3 cut(s)	177, 292, 331
MboII	GAAGA	4 cut(s)	25, 37, 79, 104
MfeI	CAATTG	1 cut(s)	151
MluCI	AATT	1 cut(s)	151
MlyI	GAGTC	1 cut(s)	44
MmeI	TCCRAC	2 cut(s)	153, 187
MnlI	CCTC	3 cut(s)	168, 171, 251
MslI	CAYNNNNRTG	1 cut(s)	222
MspI	CCGG	1 cut(s)	327
MspR9I	CCNGG	2 cut(s)	297, 327
MunI	CAATTG	1 cut(s)	151
MvaI	CCWGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	1 cut(s)	197
NciI	CCSGG	1 cut(s)	327
NdeII	GATC	3 cut(s)	177, 292, 331
NlaIII	CATG	4 cut(s)	35, 67, 196, 255
NspI	RCATGY	1 cut(s)	255
PagI	TCATGA	1 cut(s)	63
PfeI	GAWTC	1 cut(s)	302
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PsiI	TTATAA	1 cut(s)	140
Psp6I	CCWGG	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	295
RsaI	GTAC	3 cut(s)	80, 185, 247
RsaNI	GTAC	3 cut(s)	79, 184, 246
RseI	CAYNNNNRTG	1 cut(s)	222
Sau3AI	GATC	3 cut(s)	177, 292, 331
ScaI	AGTACT	1 cut(s)	185
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	2 cut(s)	297, 327
SetI	ASST	5 cut(s)	122, 135, 207, 243, 301
SmiMI	CAYNNNNRTG	1 cut(s)	222
Sse9I	AATT	1 cut(s)	151
StyD4I	CCNGG	2 cut(s)	295, 325
TaaI	ACNGT	1 cut(s)	100
TaqI	TCGA	3 cut(s)	105, 146, 180
TasI	AATT	1 cut(s)	151
TatI	WGTACW	2 cut(s)	78, 183
TfiI	GAWTC	1 cut(s)	302
TscAI	CASTG	1 cut(s)	327
TspDTI	ATGAA	2 cut(s)	80, 203
TspRI	CASTG	1 cut(s)	327
XceI	RCATGY	1 cut(s)	255
ZrmI	AGTACT	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.