Rorug07G0333300

protein dimerization activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0002468
Physical Location & Seq
Forward (+)
36540496 .. 36545207
4712 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0333300.1

Sequence Viewer

Length: 2055 bp
ATGAATCTTGAACTGCATTCTTTAGTTAGCATACTTCATTCCTGCAACACCCACCTTTCTCTATCCTTAGGAAAACAGCTCCACCTTGTTTTTCTCAAGAAGGGTCTCATCAACTCCACTGTTACATTCGGAAACCGGCTTCTGCAGATGTATGTTAAATGTGGCAGCATGAATGATGCACTCAACTTGTTTGATGAAATGCCCCAGAGAAATGGCTTCTCTTGGAACACATTGATCCAAGGTTGTATGAAATCCGGGGACCATGAGAAGTCTTTGAAGTTGTTCGATTCCATGGCTCATAAGGATGATTTCACCTGGAGCTTTCTTGTTTCAGGGTTTGCAAAAGCCGGTAAGCTAGAGCTTGCTCGTGCTTTGTTTGATGACATGCCTAGGAGAAACTGGGTTGCTTGGAATTATATGATCAATGGCTATGCCAAAAATGGGCGCTCTACAGATGCTTTGAGGCTTTTTAAGGATTTGAGTTTGGACCCATTGGAGGTATCACTATTACATGAAAAGAAATTTATATTCGCTACGGTTGTTGGAGCTTGTGCTGATTTGGTTGCTCTTGGTTGTGGCAAGCAAATTCATGCGCGTATTGTGACTGATCAAGTGGAATTTGACTCCGTTTTGGCTTGTTCGTTGGTTAATTTTTATGCCAAGTGTGGTGATTTGGATAGTGCAAGTCAAGTTTTGAAGTTGATCAAGGAGCCAGATGACTACTCTCTCTCAGCAATGATTTCAGGTTTTGCAAACTGTGGTAGAATGGACGATGCAAGAAGAGTATTTGATACTAAAAGCAATCCAGATGTTGTGTTATGGAATTCATTGATATCTGGATATGTCGTCAGTAATGAAACCATTGGAGGAGCATTACTTCTTTTCAAGGAAATGCTGACTAATGGTGTTCGTGGGAATTCTTTTACGCTGGCAAGTGTTTTGGGTGCCATTAGTGTCTCAGGCATCCTTAAACATGCTCAACAAATGCACACATTTGCCTGCAAACTTGGGCTGCTTGGTAATGTTATTGCTGCTAGTGCTATGCTTGATGCATACTCCAAGTGTGGAAGCCCTGATGATGCTTGCAGATTGTTTAGTGAACTCAAAGTCTTTGACACTATATTGCTTAATTCGATGATCACTGTGTATTCCAATTGTGGAAGAGTTGAAGATGCAAAACAGATTTTTATGGCCATGCCAAGTAAAAGCATAATATCATGGAATTCGATGATGGTTGGCCTTAGTCAAAACGGTTGTCCAATTGAAGCATTAGATATTTTCAGACAAATCAATGTGCTGGACTTGAGAATGGACAAGTTTAGCCTGGCTAGTGTGCTAAGTTCATGTGCTAGTATTTCCTCACTTGAATATGGTGAACAGGTTTTTGCCAGAGCCACCATCATTGGGCTTGATGACGATGAAATTGTTTCCAACTCACTTGTTGATTTCTATTGCAAGTGTGGTCTTGTTAAAAATGCACGAAAGCTGTTTGACAGGATGATGAAGTTTAATGAAGTGGCTTGGAATTCTATGCTAATTGGATATGCAACAAACGGTCATGGAAGTGAAGCACTGGCTCTTTTTAACGAAATGAGGCTTGCTGATGTGAAACCCAATGAAATTACATTTACAGGGGTTTTGTCTGCCTGTGATCATTGTGGGTTGGTCGAAGAGGGCAGAAAATGGTTTTCTAAGATGAAACAGGACTATGGTATTGATCCACATATTGAACACTATGCTTGCACGATTGATCTTTTTTCCCGAGCTGGTTGCCTTGAGGAAGCAATTAGTCTAGTCGAAGCAATGCCCTTTAAATTGGACGCCAGCATATTGTCATCAGTCTTGAGGGGTTGTGTGTCTCATGGACACAAGGATCTTGCGAAGAAAATGGCGGAGCGAATCATTGAGCTTGATCCTGAGAATTCAGGTGCTTATGTACAGCTTTCTAATGCACTTGCAGGTGTCAATGAGTGGGAAGGATCTGCACAGATTAGACAAATTATGAGAGATAAGAGCATACCAAAAAATCCTGCTTTCAGCTGGTTTGATCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413

Protein Analysis

684

Amino Acids

75.62

Weight (kDa)

6.09

Isoelectric Point (pI)

34.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 73 - 99 1.3e-06 PPR repeat
PPR_2 PF13041 73 - 101 9.3e-06 PPR repeat family
PPR PF01535 135 - 159 7.3e-06 PPR repeat
PPR_2 PF13041 269 - 314 5.2e-07 PPR repeat family
PPR_2 PF13041 504 - 550 1.4e-11 PPR repeat family
PPR PF01535 506 - 532 3.7e-06 PPR repeat
E_motif PF20431 621 - 682 1.7e-10 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1949
Acc36I ACCTGC 1 cut(s) 1949
AccB1I GGYRCC 1 cut(s) 944
AccII CGCG 1 cut(s) 595
AciI CCGC 1 cut(s) 1892
AclWI GGATC 5 cut(s) 229, 1712, 1881, 1907, 1987
AcoI YGGCCR 1 cut(s) 1191
AcsI RAATTY 8 cut(s) 521, 585, 617, 823, 916, 1222, 1525, 1921
AcyI GRCGYC 1 cut(s) 1821
AfaI GTAC 1 cut(s) 1938
AfiI CCNNNNNNNGG 3 cut(s) 441, 496, 1404
AgsI TTSAA 8 cut(s) 11, 277, 697, 886, 1169, 1265, 1367, 1730
AjnI CCWGG 2 cut(s) 314, 1323
Alw26I GTCTC 3 cut(s) 110, 961, 1863
AlwI GGATC 5 cut(s) 229, 1712, 1881, 1907, 1987
Ama87I CYCGRG 1 cut(s) 1761
AoxI GGCC 2 cut(s) 1191, 1237
ApeKI GCWGC 3 cut(s) 165, 1012, 1031
ApoI RAATTY 8 cut(s) 521, 585, 617, 823, 916, 1222, 1525, 1921
ArsI GACNNNNNNTTYG 2 cut(s) 1240, 1272
Asp700I GAANNNNTTC 1 cut(s) 281
AspA2I CCTAGG 1 cut(s) 389
AspLEI GCGC 2 cut(s) 447, 595
AspS9I GGNCC 2 cut(s) 259, 487
AsuC2I CCSGG 1 cut(s) 256
AsuHPI GGTGA 3 cut(s) 304, 680, 1385
AvaI CYCGRG 1 cut(s) 1761
AvaII GGWCC 2 cut(s) 259, 487
AvrII CCTAGG 1 cut(s) 389
AxyI CCTNAGG 1 cut(s) 67
BalI TGGCCA 1 cut(s) 1193
BanI GGYRCC 1 cut(s) 944
BauI CACGAG 1 cut(s) 366
BbvI GCAGC 3 cut(s) 177, 999, 1018
BccI CCATC 2 cut(s) 1225, 1406
BcgI CGANNNNNNTGC 2 cut(s) 1752, 1786
BciT130I CCWGG 2 cut(s) 316, 1325
BclI TGATCA 5 cut(s) 420, 607, 702, 1137, 1651
BcnI CCSGG 1 cut(s) 256
BcoDI GTCTC 3 cut(s) 110, 961, 1863
BfaI CTAG 6 cut(s) 356, 390, 1035, 1329, 1350, 1793
BfmI CTRYAG 2 cut(s) 143, 450
BfoI RGCGCY 1 cut(s) 448
BfuAI ACCTGC 1 cut(s) 1949
BisI GCNGC 3 cut(s) 166, 1013, 1032
BlnI CCTAGG 1 cut(s) 389
BlsI GCNGC 3 cut(s) 167, 1014, 1033
Bme1390I CCNGG 3 cut(s) 256, 316, 1325
Bme18I GGWCC 2 cut(s) 259, 487
BmeT110I CYCGRG 1 cut(s) 1761
BmgT120I GGNCC 2 cut(s) 259, 487
BmiI GGNNCC 4 cut(s) 260, 489, 711, 946
BmrFI CCNGG 3 cut(s) 256, 316, 1325
BmrI ACTGGG 1 cut(s) 409
BmsI GCATC 7 cut(s) 166, 445, 763, 972, 1039, 1069, 1162
BmuI ACTGGG 1 cut(s) 409
BpmI CTGGAG 1 cut(s) 337
BpuEI CTTGAG 4 cut(s) 80, 1324, 1796, 1864
BpuMI CCSGG 1 cut(s) 256
BsaHI GRCGYC 1 cut(s) 1821
BsaI GGTCTC 1 cut(s) 110
BsaJI CCNNGG 4 cut(s) 238, 255, 291, 389
Bsc4I CCNNNNNNNGG 3 cut(s) 441, 496, 1404
Bse118I RCCGGY 2 cut(s) 135, 347
Bse1I ACTGG 2 cut(s) 404, 1578
Bse21I CCTNAGG 1 cut(s) 67
Bse3DI GCAATG 2 cut(s) 741, 1809
BseBI CCWGG 2 cut(s) 316, 1325
BseDI CCNNGG 4 cut(s) 238, 255, 291, 389
BseGI GGATG 3 cut(s) 310, 963, 1503
BseLI CCNNNNNNNGG 3 cut(s) 441, 496, 1404
BseMI GCAATG 2 cut(s) 741, 1809
BseMII CTCAG 3 cut(s) 744, 972, 1908
BseNI ACTGG 2 cut(s) 404, 1578
BseRI GAGGAG 1 cut(s) 882
BseXI GCAGC 3 cut(s) 177, 999, 1018
BsgI GTGCAG 1 cut(s) 1968
Bsh1236I CGCG 1 cut(s) 595
BshFI GGCC 2 cut(s) 1193, 1239
BshNI GGYRCC 1 cut(s) 944
BsiHKCI CYCGRG 1 cut(s) 1761
BsiSI CCGG 3 cut(s) 136, 255, 348
BslFI GGGAC 1 cut(s) 272
BslI CCNNNNNNNGG 3 cut(s) 441, 496, 1404
BsmAI GTCTC 3 cut(s) 110, 961, 1863
BsmFI GGGAC 1 cut(s) 272
BsmI GAATGC 1 cut(s) 16
BsnI GGCC 2 cut(s) 1193, 1239
Bso31I GGTCTC 1 cut(s) 110
BsoBI CYCGRG 1 cut(s) 1761
Bsp1407I TGTACA 1 cut(s) 1936
Bsp19I CCATGG 1 cut(s) 291
BspACI CCGC 1 cut(s) 1892
BspANI GGCC 2 cut(s) 1193, 1239
BspCNI CTCAG 3 cut(s) 743, 971, 1909
BspFNI CGCG 1 cut(s) 595
BspLI GGNNCC 4 cut(s) 260, 489, 711, 946
BspMAI CTGCAG 1 cut(s) 147
BspMI ACCTGC 1 cut(s) 1949
BspPI GGATC 5 cut(s) 229, 1712, 1881, 1907, 1987
BspT107I GGYRCC 1 cut(s) 944
BspTNI GGTCTC 1 cut(s) 110
BsrDI GCAATG 2 cut(s) 741, 1809
BsrFI RCCGGY 2 cut(s) 135, 347
BsrGI TGTACA 1 cut(s) 1936
BsrI ACTGG 2 cut(s) 404, 1578
BssAI RCCGGY 2 cut(s) 135, 347
BssECI CCNNGG 4 cut(s) 238, 255, 291, 389
BssNI GRCGYC 1 cut(s) 1821
BssSI CACGAG 1 cut(s) 366
BssT1I CCWWGG 3 cut(s) 238, 291, 389
Bst2BI CACGAG 1 cut(s) 366
Bst2UI CCWGG 2 cut(s) 316, 1325
Bst4CI ACNGT 6 cut(s) 121, 538, 758, 1144, 1253, 1556
Bst6I CTCTTC 3 cut(s) 775, 1156, 1665
BstACI GRCGYC 1 cut(s) 1821
BstAUI TGTACA 1 cut(s) 1936
BstC8I GCNNGC 8 cut(s) 363, 581, 930, 1000, 1084, 1599, 1741, 1825
BstDEI CTNAG 7 cut(s) 67, 730, 958, 1241, 1337, 1692, 1917
BstDSI CCRYGG 1 cut(s) 291
BstF5I GGATG 3 cut(s) 310, 963, 1503
BstFNI CGCG 1 cut(s) 595
BstH2I RGCGCY 1 cut(s) 448
BstHHI GCGC 2 cut(s) 447, 595
BstMAI GTCTC 3 cut(s) 110, 961, 1863
BstMWI GCNNNNNNNGC 1 cut(s) 1037
BstNI CCWGG 2 cut(s) 316, 1325
BstNSI RCATGY 2 cut(s) 388, 977
BstSCI CCNGG 3 cut(s) 254, 314, 1323
BstSFI CTRYAG 2 cut(s) 143, 450
BstUI CGCG 1 cut(s) 595
BstV1I GCAGC 3 cut(s) 177, 999, 1018
BstX2I RGATCY 2 cut(s) 1873, 1979
BstXI CCANNNNNNTGG 1 cut(s) 212
BstYI RGATCY 2 cut(s) 1873, 1979
Bsu36I CCTNAGG 1 cut(s) 67
BsuRI GGCC 2 cut(s) 1193, 1239
BtgI CCRYGG 1 cut(s) 291
BtsCI GGATG 3 cut(s) 310, 963, 1503
BtsIMutI CAGTG 3 cut(s) 117, 1140, 1571
BveI ACCTGC 1 cut(s) 1949
Cac8I GCNNGC 8 cut(s) 363, 581, 930, 1000, 1084, 1599, 1741, 1825
CfoI GCGC 2 cut(s) 447, 595
Cfr10I RCCGGY 2 cut(s) 135, 347
Cfr13I GGNCC 2 cut(s) 259, 487
CseI GACGC 1 cut(s) 1829
Csp6I GTAC 1 cut(s) 1937
CspCI CAANNNNNGTGG 2 cut(s) 1384, 1419
CviQI GTAC 1 cut(s) 1937
DdeI CTNAG 7 cut(s) 67, 730, 958, 1241, 1337, 1692, 1917
DraI TTTAAA 1 cut(s) 1813
EaeI YGGCCR 1 cut(s) 1191
Eam1104I CTCTTC 3 cut(s) 775, 1156, 1665
EarI CTCTTC 3 cut(s) 775, 1156, 1665
EciI GGCGGA 1 cut(s) 1907
Eco130I CCWWGG 3 cut(s) 238, 291, 389
Eco31I GGTCTC 1 cut(s) 110
Eco32I GATATC 1 cut(s) 834
Eco47I GGWCC 2 cut(s) 259, 487
Eco81I CCTNAGG 1 cut(s) 67
Eco88I CYCGRG 1 cut(s) 1761
EcoRI GAATTC 5 cut(s) 823, 916, 1222, 1525, 1921
EcoRII CCWGG 2 cut(s) 314, 1323
EcoRV GATATC 1 cut(s) 834
EcoT14I CCWWGG 3 cut(s) 238, 291, 389
EcoT22I ATGCAT 1 cut(s) 1054
ErhI CCWWGG 3 cut(s) 238, 291, 389
FaqI GGGAC 1 cut(s) 272
FbaI TGATCA 5 cut(s) 420, 607, 702, 1137, 1651
Fnu4HI GCNGC 3 cut(s) 166, 1013, 1032
FokI GGATG 3 cut(s) 317, 950, 1510
Fsp4HI GCNGC 3 cut(s) 166, 1013, 1032
FspBI CTAG 6 cut(s) 356, 390, 1035, 1329, 1350, 1793
GlaI GCGC 2 cut(s) 446, 594
GluI GCNGC 3 cut(s) 166, 1013, 1032
GsuI CTGGAG 1 cut(s) 337
HaeII RGCGCY 1 cut(s) 448
HaeIII GGCC 2 cut(s) 1193, 1239
HapII CCGG 3 cut(s) 136, 255, 348
HgaI GACGC 1 cut(s) 1829
HhaI GCGC 2 cut(s) 447, 595
Hin1I GRCGYC 1 cut(s) 1821
Hin6I GCGC 2 cut(s) 445, 593
HinP1I GCGC 2 cut(s) 445, 593
HinfI GANTC 4 cut(s) 4, 287, 623, 1899
HpaII CCGG 3 cut(s) 136, 255, 348
HphI GGTGA 3 cut(s) 304, 680, 1385
Hpy166II GTNNAC 2 cut(s) 1100, 1376
Hpy188I TCNGA 2 cut(s) 131, 1283
Hpy188III TCNNGA 7 cut(s) 8, 97, 806, 837, 1761, 1843, 1916
Hpy8I GTNNAC 2 cut(s) 1100, 1376
HpyAV CCTTC 2 cut(s) 94, 1970
HpyCH4III ACNGT 6 cut(s) 121, 538, 758, 1144, 1253, 1556
HpyF10VI GCNNNNNNNGC 1 cut(s) 1037
HpyF3I CTNAG 7 cut(s) 67, 730, 958, 1241, 1337, 1692, 1917
Hsp92I GRCGYC 1 cut(s) 1821
HspAI GCGC 2 cut(s) 445, 593
Ksp22I TGATCA 5 cut(s) 420, 607, 702, 1137, 1651
LmnI GCTCC 6 cut(s) 84, 318, 545, 709, 869, 1894
Lsp1109I GCAGC 3 cut(s) 177, 999, 1018
LweI GCATC 7 cut(s) 166, 445, 763, 972, 1039, 1069, 1162
MaeI CTAG 6 cut(s) 356, 390, 1035, 1329, 1350, 1793
MaeIII GTNAC 2 cut(s) 121, 601
MboII GAAGA 5 cut(s) 792, 1173, 1181, 1682, 1894
MfeI CAATTG 2 cut(s) 1153, 1260
MflI RGATCY 2 cut(s) 1873, 1979
MlsI TGGCCA 1 cut(s) 1193
MluNI TGGCCA 1 cut(s) 1193
MlyI GAGTC 1 cut(s) 617
MmeI TCCRAC 2 cut(s) 523, 1455
MnlI CCTC 8 cut(s) 456, 490, 860, 1369, 1587, 1666, 1771, 1839
Mox20I TGGCCA 1 cut(s) 1193
Mph1103I ATGCAT 1 cut(s) 1054
MroXI GAANNNNTTC 1 cut(s) 281
MscI TGGCCA 1 cut(s) 1193
MseI TTAA 9 cut(s) 156, 471, 648, 969, 1128, 1470, 1509, 1584, 1812
MslI CAYNNNNRTG 2 cut(s) 303, 1563
Msp20I TGGCCA 1 cut(s) 1193
MspA1I CMGCKG 1 cut(s) 2040
MspI CCGG 3 cut(s) 136, 255, 348
MspR9I CCNGG 3 cut(s) 256, 316, 1325
MunI CAATTG 2 cut(s) 1153, 1260
Mva1269I GAATGC 1 cut(s) 16
MvaI CCWGG 2 cut(s) 316, 1325
MvnI CGCG 1 cut(s) 595
MwoI GCNNNNNNNGC 1 cut(s) 1037
NciI CCSGG 1 cut(s) 256
NcoI CCATGG 1 cut(s) 291
NlaIV GGNNCC 4 cut(s) 260, 489, 711, 946
NmuCI GTSAC 1 cut(s) 601
NsiI ATGCAT 1 cut(s) 1054
NspI RCATGY 2 cut(s) 388, 977
PaqCI CACCTGC 1 cut(s) 1949
PctI GAATGC 1 cut(s) 16
PdmI GAANNNNTTC 1 cut(s) 281
PfeI GAWTC 3 cut(s) 4, 287, 1899
PkrI GCNGC 3 cut(s) 167, 1014, 1033
PleI GAGTC 1 cut(s) 617
PpsI GAGTC 1 cut(s) 617
Psp6I CCWGG 2 cut(s) 314, 1323
PspGI CCWGG 2 cut(s) 314, 1323
PspN4I GGNNCC 4 cut(s) 260, 489, 711, 946
PspPI GGNCC 2 cut(s) 259, 487
PstI CTGCAG 1 cut(s) 147
PsuI RGATCY 2 cut(s) 1873, 1979
PvuII CAGCTG 1 cut(s) 2040
RsaI GTAC 1 cut(s) 1938
RsaNI GTAC 1 cut(s) 1937
RseI CAYNNNNRTG 2 cut(s) 303, 1563
SaqAI TTAA 9 cut(s) 156, 471, 648, 969, 1128, 1470, 1509, 1584, 1812
SatI GCNGC 3 cut(s) 166, 1013, 1032
Sau96I GGNCC 2 cut(s) 259, 487
SchI GAGTC 1 cut(s) 617
ScrFI CCNGG 3 cut(s) 256, 316, 1325
SfaNI GCATC 7 cut(s) 166, 445, 763, 972, 1039, 1069, 1162
SfcI CTRYAG 2 cut(s) 143, 450
SinI GGWCC 2 cut(s) 259, 487
SmiMI CAYNNNNRTG 2 cut(s) 303, 1563
SmlI CTYRAG 4 cut(s) 95, 1303, 1775, 1843
SmoI CTYRAG 4 cut(s) 95, 1303, 1775, 1843
SsiI CCGC 1 cut(s) 1892
SspMI CTAG 6 cut(s) 356, 390, 1035, 1329, 1350, 1793
StyD4I CCNGG 3 cut(s) 254, 314, 1323
StyI CCWWGG 3 cut(s) 238, 291, 389
TaaI ACNGT 6 cut(s) 121, 538, 758, 1144, 1253, 1556
TaqI TCGA 5 cut(s) 285, 1133, 1226, 1668, 1797
TatI WGTACW 1 cut(s) 1936
TfiI GAWTC 3 cut(s) 4, 287, 1899
Tru1I TTAA 9 cut(s) 156, 471, 648, 969, 1128, 1470, 1509, 1584, 1812
Tru9I TTAA 9 cut(s) 156, 471, 648, 969, 1128, 1470, 1509, 1584, 1812
TscAI CASTG 3 cut(s) 124, 1147, 1578
TseFI GTSAC 1 cut(s) 601
TseI GCWGC 3 cut(s) 165, 1012, 1031
Tsp45I GTSAC 1 cut(s) 601
TspGWI ACGGA 1 cut(s) 616
TspRI CASTG 3 cut(s) 124, 1147, 1578
VpaK11BI GGWCC 2 cut(s) 259, 487
XapI RAATTY 8 cut(s) 521, 585, 617, 823, 916, 1222, 1525, 1921
XceI RCATGY 2 cut(s) 388, 977
XmaJI CCTAGG 1 cut(s) 389
XmnI GAANNNNTTC 1 cut(s) 281
XspI CTAG 6 cut(s) 356, 390, 1035, 1329, 1350, 1793
Zsp2I ATGCAT 1 cut(s) 1054
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.