Rroxscaffold_3G00220400

protein dimerization activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0002468
Physical Location & Seq
Reverse (-)
2626467 .. 2627195
729 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00220400.1

Sequence Viewer

Length: 729 bp
ATGTTGGCCGATCTCTTGTCCCCAACCATGATCCCGGGACTCATGTCCGGGGACTACATTGGGATGGAGAGCTGCGTCGACGTCCTCAGGGATCAAGACGAATCACACTGCGATTACAAACAACAAAACTGCTACAACCAAAAGGTGCAAGACAAGAGAGAGGAGAAGAGACTGGCGATGATGAAGAGGATGGAGCTTCCTCCACCGATTCCGATGCTGGCGCGAACGGAGAATCTCCCCTCCCACATGCCGTGGGTTTTGAAGAGGCATTACACGACCGATGGAAGGTTGATTTTGACAGAGGAGAAGGTCAGGCATCATGAGTATTTTAGGGCGCAAAGATCCAACGGACGACTGACCTTGCAGCTCGTTCCTCTTGATGACGAGTTGTTGGCCTCGCCTTTCACGGCCAATCAGAAGGACAATATGGATGAGGCAAATGCTCAAGATGATGACGACAACGAAGAAAATGAAGAGGATGATTATGATAGGTATGATGATGGATGTGGTGAGGAAGAGGAAGAGGAAGAGGAAGAGGAGGAGAAAGAGAAAGAGGAGGAGGAGGAGGAGGATGAACAAGATGATGGGGTTGATGATTTGCAGCACCATGATGGTGTGCCTGAAGAGCCAATTTCGACAGGAAAGTGTTTCAATTTCAACAGTGTGGGAACAGGTTCCCCGTGTATTTTCGGGGTGCCAGTGCCGGCGATCAGGCAAGTTCATAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413

Protein Analysis

242

Amino Acids

27.94

Weight (kDa)

4.29

Isoelectric Point (pI)

77.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 65 - 123 3.9e-20 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 84
AccB1I GGYRCC 1 cut(s) 694
AccI GTMKAC 1 cut(s) 78
AccII CGCG 1 cut(s) 223
AclWI GGATC 3 cut(s) 25, 99, 336
AcoI YGGCCR 2 cut(s) 6, 408
AcuI CTGAAG 1 cut(s) 642
AcyI GRCGYC 1 cut(s) 81
AfiI CCNNNNNNNGG 1 cut(s) 285
AgsI TTSAA 3 cut(s) 262, 652, 658
AluBI AGCT 3 cut(s) 72, 196, 367
AluI AGCT 3 cut(s) 72, 196, 367
Alw26I GTCTC 1 cut(s) 163
AlwI GGATC 3 cut(s) 25, 99, 336
Ama87I CYCGRG 1 cut(s) 34
AoxI GGCC 3 cut(s) 6, 393, 408
ApeKI GCWGC 3 cut(s) 72, 364, 601
Asp700I GAANNNNTTC 1 cut(s) 673
AspLEI GCGC 2 cut(s) 223, 337
AsuC2I CCSGG 3 cut(s) 35, 36, 49
AsuHPI GGTGA 1 cut(s) 521
AvaI CYCGRG 1 cut(s) 34
AxyI CCTNAGG 1 cut(s) 86
BanI GGYRCC 1 cut(s) 694
BarI GAAGNNNNNNTAC 2 cut(s) 254, 286
BbvI GCAGC 3 cut(s) 59, 376, 613
BccI CCATC 6 cut(s) 58, 184, 275, 494, 578, 605
BceAI ACGGC 2 cut(s) 235, 423
BcgI CGANNNNNNTGC 2 cut(s) 196, 230
BcnI CCSGG 3 cut(s) 35, 36, 49
BcoDI GTCTC 1 cut(s) 163
BisI GCNGC 3 cut(s) 73, 365, 602
BlsI GCNGC 3 cut(s) 74, 366, 603
Bme1390I CCNGG 3 cut(s) 35, 36, 49
BmeT110I CYCGRG 1 cut(s) 34
BmiI GGNNCC 2 cut(s) 676, 696
BmrFI CCNGG 3 cut(s) 35, 36, 49
BmsI GCATC 2 cut(s) 204, 325
BoxI GACNNNNGTC 1 cut(s) 43
BpuEI CTTGAG 1 cut(s) 429
BpuMI CCSGG 3 cut(s) 35, 36, 49
BsaHI GRCGYC 1 cut(s) 81
BsaJI CCNNGG 3 cut(s) 34, 48, 251
Bsc4I CCNNNNNNNGG 1 cut(s) 285
Bse118I RCCGGY 1 cut(s) 703
Bse1I ACTGG 2 cut(s) 177, 698
Bse21I CCTNAGG 1 cut(s) 86
BseDI CCNNGG 3 cut(s) 34, 48, 251
BseGI GGATG 6 cut(s) 69, 195, 436, 484, 509, 577
BseLI CCNNNNNNNGG 1 cut(s) 285
BseMII CTCAG 1 cut(s) 100
BseNI ACTGG 2 cut(s) 177, 698
BseRI GAGGAG 9 cut(s) 176, 317, 551, 554, 569, 572, 575, 578, 581
BseXI GCAGC 3 cut(s) 59, 376, 613
Bsh1236I CGCG 1 cut(s) 223
Bsh1285I CGRYCG 1 cut(s) 279
BshFI GGCC 3 cut(s) 8, 395, 410
BshNI GGYRCC 1 cut(s) 694
BsiEI CGRYCG 1 cut(s) 279
BsiHKCI CYCGRG 1 cut(s) 34
BsiSI CCGG 3 cut(s) 35, 48, 704
BslFI GGGAC 3 cut(s) 4, 51, 65
BslI CCNNNNNNNGG 1 cut(s) 285
BsmAI GTCTC 1 cut(s) 163
BsmFI GGGAC 3 cut(s) 4, 51, 65
BsnI GGCC 3 cut(s) 8, 395, 410
BsoBI CYCGRG 1 cut(s) 34
Bsp143I GATC 5 cut(s) 10, 30, 91, 341, 708
BspANI GGCC 3 cut(s) 8, 395, 410
BspCNI CTCAG 1 cut(s) 99
BspFNI CGCG 1 cut(s) 223
BspHI TCATGA 1 cut(s) 319
BspLI GGNNCC 2 cut(s) 676, 696
BspPI GGATC 3 cut(s) 25, 99, 336
BspQI GCTCTTC 1 cut(s) 618
BspT107I GGYRCC 1 cut(s) 694
BsrFI RCCGGY 1 cut(s) 703
BsrI ACTGG 2 cut(s) 177, 698
BssAI RCCGGY 1 cut(s) 703
BssECI CCNNGG 3 cut(s) 34, 48, 251
BssMI GATC 5 cut(s) 10, 30, 91, 341, 708
BssNI GRCGYC 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 662
Bst6I CTCTTC 9 cut(s) 161, 179, 257, 468, 510, 516, 522, 528, 618
BstACI GRCGYC 1 cut(s) 81
BstC8I GCNNGC 2 cut(s) 219, 705
BstDEI CTNAG 1 cut(s) 86
BstDSI CCRYGG 1 cut(s) 251
BstF5I GGATG 6 cut(s) 69, 195, 436, 484, 509, 577
BstFNI CGCG 1 cut(s) 223
BstHHI GCGC 2 cut(s) 223, 337
BstKTI GATC 5 cut(s) 13, 33, 94, 344, 711
BstMAI GTCTC 1 cut(s) 163
BstMBI GATC 5 cut(s) 10, 30, 91, 341, 708
BstMCI CGRYCG 1 cut(s) 279
BstMWI GCNNNNNNNGC 1 cut(s) 625
BstNSI RCATGY 1 cut(s) 250
BstPAI GACNNNNGTC 1 cut(s) 43
BstSCI CCNGG 3 cut(s) 33, 34, 47
BstUI CGCG 1 cut(s) 223
BstV1I GCAGC 3 cut(s) 59, 376, 613
BstX2I RGATCY 1 cut(s) 341
BstYI RGATCY 1 cut(s) 341
Bsu36I CCTNAGG 1 cut(s) 86
BsuRI GGCC 3 cut(s) 8, 395, 410
BtgI CCRYGG 1 cut(s) 251
BtgZI GCGATG 1 cut(s) 191
BtsCI GGATG 6 cut(s) 69, 195, 436, 484, 509, 577
BtsI GCAGTG 1 cut(s) 106
BtsIMutI CAGTG 3 cut(s) 106, 667, 705
Cac8I GCNNGC 2 cut(s) 219, 705
CciI TCATGA 1 cut(s) 319
CfoI GCGC 2 cut(s) 223, 337
Cfr10I RCCGGY 1 cut(s) 703
Cfr9I CCCGGG 1 cut(s) 34
CseI GACGC 1 cut(s) 64
CviAII CATG 5 cut(s) 28, 43, 247, 320, 608
CviJI RGCY 7 cut(s) 8, 72, 196, 367, 395, 410, 628
CviKI_1 RGCY 7 cut(s) 8, 72, 196, 367, 395, 410, 628
DdeI CTNAG 1 cut(s) 86
DpnI GATC 5 cut(s) 12, 32, 93, 343, 710
DpnII GATC 5 cut(s) 10, 30, 91, 341, 708
EaeI YGGCCR 2 cut(s) 6, 408
Eam1104I CTCTTC 9 cut(s) 161, 179, 257, 468, 510, 516, 522, 528, 618
EarI CTCTTC 9 cut(s) 161, 179, 257, 468, 510, 516, 522, 528, 618
Eco57I CTGAAG 1 cut(s) 642
Eco81I CCTNAGG 1 cut(s) 86
Eco88I CYCGRG 1 cut(s) 34
FaeI CATG 5 cut(s) 31, 46, 250, 323, 611
FaiI YATR 9 cut(s) 29, 44, 248, 321, 428, 486, 495, 609, 723
FaqI GGGAC 3 cut(s) 4, 51, 65
FatI CATG 5 cut(s) 27, 42, 246, 319, 607
FblI GTMKAC 1 cut(s) 78
Fnu4HI GCNGC 3 cut(s) 73, 365, 602
FokI GGATG 6 cut(s) 76, 202, 443, 491, 516, 584
Fsp4HI GCNGC 3 cut(s) 73, 365, 602
GlaI GCGC 2 cut(s) 222, 336
GluI GCNGC 3 cut(s) 73, 365, 602
HaeIII GGCC 3 cut(s) 8, 395, 410
HapII CCGG 3 cut(s) 35, 48, 704
HgaI GACGC 1 cut(s) 64
HhaI GCGC 2 cut(s) 223, 337
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 5 cut(s) 31, 46, 250, 323, 611
Hin6I GCGC 2 cut(s) 221, 335
HinP1I GCGC 2 cut(s) 221, 335
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HinfI GANTC 4 cut(s) 39, 101, 208, 232
HpaII CCGG 3 cut(s) 35, 48, 704
HphI GGTGA 1 cut(s) 521
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 2 cut(s) 213, 417
Hpy188III TCNNGA 4 cut(s) 95, 320, 377, 446
Hpy8I GTNNAC 1 cut(s) 79
Hpy99I CGWCG 2 cut(s) 80, 83
HpyAV CCTTC 3 cut(s) 279, 301, 412
HpyCH4III ACNGT 1 cut(s) 662
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 3 cut(s) 148, 364, 601
HpyF10VI GCNNNNNNNGC 1 cut(s) 625
HpyF3I CTNAG 1 cut(s) 86
HpySE526I ACGT 1 cut(s) 81
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 5 cut(s) 31, 46, 250, 323, 611
HspAI GCGC 2 cut(s) 221, 335
KroI GCCGGC 1 cut(s) 703
KroNI GCCGGC 1 cut(s) 705
Kzo9I GATC 5 cut(s) 10, 30, 91, 341, 708
LguI GCTCTTC 1 cut(s) 618
LmnI GCTCC 1 cut(s) 193
Lsp1109I GCAGC 3 cut(s) 59, 376, 613
LweI GCATC 2 cut(s) 204, 325
MaeII ACGT 1 cut(s) 81
MalI GATC 5 cut(s) 12, 32, 93, 343, 710
MboI GATC 5 cut(s) 10, 30, 91, 341, 708
MflI RGATCY 1 cut(s) 341
MluCI AATT 2 cut(s) 630, 652
MlyI GAGTC 1 cut(s) 33
MmeI TCCRAC 1 cut(s) 369
MroNI GCCGGC 1 cut(s) 703
MroXI GAANNNNTTC 1 cut(s) 673
MslI CAYNNNNRTG 3 cut(s) 62, 609, 612
MspI CCGG 3 cut(s) 35, 48, 704
MspR9I CCNGG 3 cut(s) 35, 36, 49
MvnI CGCG 1 cut(s) 223
MwoI GCNNNNNNNGC 1 cut(s) 625
NaeI GCCGGC 1 cut(s) 705
NciI CCSGG 3 cut(s) 35, 36, 49
NdeII GATC 5 cut(s) 10, 30, 91, 341, 708
NgoMIV GCCGGC 1 cut(s) 703
NlaIII CATG 5 cut(s) 31, 46, 250, 323, 611
NlaIV GGNNCC 2 cut(s) 676, 696
NspI RCATGY 1 cut(s) 250
PagI TCATGA 1 cut(s) 319
PciSI GCTCTTC 1 cut(s) 618
PdiI GCCGGC 1 cut(s) 705
PdmI GAANNNNTTC 1 cut(s) 673
PfeI GAWTC 3 cut(s) 101, 208, 232
PkrI GCNGC 3 cut(s) 74, 366, 603
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
PshAI GACNNNNGTC 1 cut(s) 43
PspN4I GGNNCC 2 cut(s) 676, 696
PsuI RGATCY 1 cut(s) 341
RseI CAYNNNNRTG 3 cut(s) 62, 609, 612
SalI GTCGAC 1 cut(s) 77
SapI GCTCTTC 1 cut(s) 618
SatI GCNGC 3 cut(s) 73, 365, 602
Sau3AI GATC 5 cut(s) 10, 30, 91, 341, 708
SchI GAGTC 1 cut(s) 33
ScrFI CCNGG 3 cut(s) 35, 36, 49
SfaNI GCATC 2 cut(s) 204, 325
SgrDI CGTCGACG 1 cut(s) 77
SmaI CCCGGG 1 cut(s) 36
SmiMI CAYNNNNRTG 3 cut(s) 62, 609, 612
SmlI CTYRAG 1 cut(s) 444
SmoI CTYRAG 1 cut(s) 444
Sse9I AATT 2 cut(s) 630, 652
StyD4I CCNGG 3 cut(s) 33, 34, 47
TaaI ACNGT 1 cut(s) 662
TaiI ACGT 1 cut(s) 84
TaqI TCGA 2 cut(s) 78, 635
TaqII GACCGA 1 cut(s) 293
TasI AATT 2 cut(s) 630, 652
TfiI GAWTC 3 cut(s) 101, 208, 232
TscAI CASTG 3 cut(s) 113, 667, 705
TseI GCWGC 3 cut(s) 72, 364, 601
TspDTI ATGAA 4 cut(s) 197, 486, 588, 710
TspGWI ACGGA 2 cut(s) 242, 363
TspMI CCCGGG 1 cut(s) 34
TspRI CASTG 3 cut(s) 113, 667, 705
XceI RCATGY 1 cut(s) 250
XmaI CCCGGG 1 cut(s) 34
XmiI GTMKAC 1 cut(s) 78
XmnI GAANNNNTTC 1 cut(s) 673
ZraI GACGTC 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.