Rw7G040810

protein dimerization activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0002468
Physical Location & Seq
Forward (+)
63664255 .. 63665127
873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G040810.1

Sequence Viewer

Length: 873 bp
ATGCAGATCTCCAGAGACCATGATGACAACCCATGCCTAAAACAACAACAACTACCCCTACGCTCTCTTCATTTGGGTCTCAAGGACCACACTATTGTACCCCATCATCCACAAACCCCAGTATCCCACCAAAATAGTCCCTCCTCCGCCATGTTGGCCGATCTCTTGTCCCCAACCATGATCCCGGGACTCATGTCCGGGGACTACATTGGGATGGAGAGCTGCGTTGACGTCCTCAGGGATGAAGACGAATCACACTGTGATTACAAACAACAAAACTGCTACAACCAAAAGGTGCAAGATAAGAGAGAGGAGAAGAGACTGGCGATGATGAAGAGGATGGAGCTTCCTCCTCCGATTCCGATGCTGGCGCGCACGGAGAATCTCCCCTCCCACATGCCGTGGGTTTTGAAGAGGCATTACACGACCGATGGAAGGTTGATTTTGACAGAGGAGAAGGTCAGGCATCATGAGTATTTTAGGGCGCACAGATCCAACGGCAGACTGACCTTGCAGCTCGTTCCTCTTGATGACGAGTTGCTGGCCTCGCCTTTCACGGCCAATCAGAAGGACAATATGGATGAGGCAAATGCTCATGATGATGACGACAGCGAAGAAAATGAAGAGGATGATTATGATAGGTATGATGATGGATGTAGTGAGGATGAGGAAGAGGAAGAGGAAGAGGAGGAGAAAGAGAAAGAGGAGGAGGAGGATGAACAAGATGATGGGGTTGATGATTTGCAGTACCATGATGGTGTGCCTGAAGAGCCAATTTCGACAGGAAAGTGTTTCAATTTCAACAGTGTGGGAACAGGTTCCCGGTGTATTTTCGGGGTGCCAGTGCCAGCGATCAGGCAAGTTCATAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413

Protein Analysis

290

Amino Acids

33.39

Weight (kDa)

4.56

Isoelectric Point (pI)

72.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 115 - 173 6.6e-20 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 234
AccB1I GGYRCC 1 cut(s) 838
AccII CGCG 1 cut(s) 373
AciI CCGC 1 cut(s) 147
AclWI GGATC 2 cut(s) 175, 486
AcoI YGGCCR 2 cut(s) 156, 558
AcuI CTGAAG 1 cut(s) 786
AcyI GRCGYC 1 cut(s) 231
AdeI CACNNNGTG 1 cut(s) 260
AfaI GTAC 2 cut(s) 99, 749
AfiI CCNNNNNNNGG 1 cut(s) 435
AgsI TTSAA 3 cut(s) 412, 796, 802
AluBI AGCT 3 cut(s) 222, 346, 517
AluI AGCT 3 cut(s) 222, 346, 517
Alw26I GTCTC 3 cut(s) 9, 83, 313
AlwI GGATC 2 cut(s) 175, 486
Ama87I CYCGRG 1 cut(s) 184
AoxI GGCC 3 cut(s) 156, 543, 558
ApeKI GCWGC 2 cut(s) 222, 514
Asp700I GAANNNNTTC 1 cut(s) 817
AspLEI GCGC 3 cut(s) 373, 375, 487
AspS9I GGNCC 1 cut(s) 85
AsuC2I CCSGG 4 cut(s) 185, 186, 199, 823
AvaI CYCGRG 1 cut(s) 184
AvaII GGWCC 1 cut(s) 85
AxyI CCTNAGG 1 cut(s) 236
BaeI ACNNNNGTAYC 4 cut(s) 81, 105, 114, 138
BanI GGYRCC 1 cut(s) 838
BarI GAAGNNNNNNTAC 2 cut(s) 404, 436
BbsI GAAGAC 1 cut(s) 252
BbvI GCAGC 2 cut(s) 209, 526
BccI CCATC 7 cut(s) 111, 208, 334, 425, 644, 722, 749
BceAI ACGGC 3 cut(s) 385, 514, 573
BcgI CGANNNNNNTGC 2 cut(s) 346, 380
BciVI GTATCC 1 cut(s) 133
BcnI CCSGG 4 cut(s) 185, 186, 199, 823
BcoDI GTCTC 3 cut(s) 9, 83, 313
BfuI GTATCC 1 cut(s) 133
BglI GCCNNNNNGGC 1 cut(s) 155
BglII AGATCT 1 cut(s) 6
BisI GCNGC 2 cut(s) 223, 515
BlsI GCNGC 2 cut(s) 224, 516
Bme1390I CCNGG 4 cut(s) 185, 186, 199, 823
Bme18I GGWCC 1 cut(s) 85
BmeT110I CYCGRG 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 85
BmiI GGNNCC 2 cut(s) 820, 840
BmrFI CCNGG 4 cut(s) 185, 186, 199, 823
BmrI ACTGGG 1 cut(s) 113
BmsI GCATC 2 cut(s) 354, 475
BmuI ACTGGG 1 cut(s) 113
BoxI GACNNNNGTC 1 cut(s) 193
BpiI GAAGAC 1 cut(s) 252
BpuEI CTTGAG 1 cut(s) 65
BpuMI CCSGG 4 cut(s) 185, 186, 199, 823
BsaHI GRCGYC 1 cut(s) 231
BsaI GGTCTC 2 cut(s) 9, 83
BsaJI CCNNGG 3 cut(s) 184, 198, 401
Bsc4I CCNNNNNNNGG 1 cut(s) 435
Bse1I ACTGG 3 cut(s) 119, 327, 842
Bse21I CCTNAGG 1 cut(s) 236
BseDI CCNNGG 3 cut(s) 184, 198, 401
BseGI GGATG 9 cut(s) 106, 219, 247, 345, 586, 634, 659, 670, 721
BseLI CCNNNNNNNGG 1 cut(s) 435
BseMII CTCAG 1 cut(s) 250
BseNI ACTGG 3 cut(s) 119, 327, 842
BsePI GCGCGC 1 cut(s) 371
BseRI GAGGAG 9 cut(s) 133, 326, 342, 467, 701, 704, 719, 722, 725
BseXI GCAGC 2 cut(s) 209, 526
Bsh1236I CGCG 1 cut(s) 373
Bsh1285I CGRYCG 1 cut(s) 429
BshFI GGCC 3 cut(s) 158, 545, 560
BshNI GGYRCC 1 cut(s) 838
BsiEI CGRYCG 1 cut(s) 429
BsiHKCI CYCGRG 1 cut(s) 184
BsiSI CCGG 3 cut(s) 185, 198, 823
BslFI GGGAC 4 cut(s) 123, 154, 201, 215
BslI CCNNNNNNNGG 1 cut(s) 435
BsmAI GTCTC 3 cut(s) 9, 83, 313
BsmFI GGGAC 4 cut(s) 123, 154, 201, 215
BsnI GGCC 3 cut(s) 158, 545, 560
Bso31I GGTCTC 2 cut(s) 9, 83
BsoBI CYCGRG 1 cut(s) 184
Bsp143I GATC 5 cut(s) 6, 160, 180, 491, 852
BspACI CCGC 1 cut(s) 147
BspANI GGCC 3 cut(s) 158, 545, 560
BspCNI CTCAG 1 cut(s) 249
BspFNI CGCG 1 cut(s) 373
BspHI TCATGA 2 cut(s) 469, 595
BspLI GGNNCC 2 cut(s) 820, 840
BspPI GGATC 2 cut(s) 175, 486
BspQI GCTCTTC 1 cut(s) 762
BspT107I GGYRCC 1 cut(s) 838
BspTNI GGTCTC 2 cut(s) 9, 83
BsrI ACTGG 3 cut(s) 119, 327, 842
BssECI CCNNGG 3 cut(s) 184, 198, 401
BssHII GCGCGC 1 cut(s) 371
BssMI GATC 5 cut(s) 6, 160, 180, 491, 852
BssNI GRCGYC 1 cut(s) 231
Bst4CI ACNGT 2 cut(s) 260, 806
Bst6I CTCTTC 9 cut(s) 72, 311, 329, 407, 618, 666, 672, 678, 762
BstACI GRCGYC 1 cut(s) 231
BstC8I GCNNGC 4 cut(s) 369, 373, 543, 849
BstDEI CTNAG 1 cut(s) 236
BstDSI CCRYGG 1 cut(s) 401
BstF5I GGATG 9 cut(s) 106, 219, 247, 345, 586, 634, 659, 670, 721
BstFNI CGCG 1 cut(s) 373
BstHHI GCGC 3 cut(s) 373, 375, 487
BstKTI GATC 5 cut(s) 9, 163, 183, 494, 855
BstMAI GTCTC 3 cut(s) 9, 83, 313
BstMBI GATC 5 cut(s) 6, 160, 180, 491, 852
BstMCI CGRYCG 1 cut(s) 429
BstMWI GCNNNNNNNGC 3 cut(s) 155, 547, 769
BstNSI RCATGY 1 cut(s) 400
BstPAI GACNNNNGTC 1 cut(s) 193
BstSCI CCNGG 4 cut(s) 183, 184, 197, 821
BstUI CGCG 1 cut(s) 373
BstV1I GCAGC 2 cut(s) 209, 526
BstV2I GAAGAC 1 cut(s) 252
BstX2I RGATCY 2 cut(s) 6, 491
BstYI RGATCY 2 cut(s) 6, 491
Bsu36I CCTNAGG 1 cut(s) 236
BsuI GTATCC 1 cut(s) 133
BsuRI GGCC 3 cut(s) 158, 545, 560
BtgI CCRYGG 1 cut(s) 401
BtgZI GCGATG 1 cut(s) 341
BtsCI GGATG 9 cut(s) 106, 219, 247, 345, 586, 634, 659, 670, 721
BtsIMutI CAGTG 3 cut(s) 256, 811, 849
Cac8I GCNNGC 4 cut(s) 369, 373, 543, 849
CciI TCATGA 2 cut(s) 469, 595
CfoI GCGC 3 cut(s) 373, 375, 487
Cfr13I GGNCC 1 cut(s) 85
Cfr9I CCCGGG 1 cut(s) 184
Csp6I GTAC 2 cut(s) 98, 748
CviAII CATG 9 cut(s) 20, 33, 151, 178, 193, 397, 470, 596, 752
CviJI RGCY 7 cut(s) 158, 222, 346, 517, 545, 560, 772
CviKI_1 RGCY 7 cut(s) 158, 222, 346, 517, 545, 560, 772
CviQI GTAC 2 cut(s) 98, 748
DdeI CTNAG 1 cut(s) 236
DpnI GATC 5 cut(s) 8, 162, 182, 493, 854
DpnII GATC 5 cut(s) 6, 160, 180, 491, 852
DraIII CACNNNGTG 1 cut(s) 260
EaeI YGGCCR 2 cut(s) 156, 558
Eam1104I CTCTTC 9 cut(s) 72, 311, 329, 407, 618, 666, 672, 678, 762
EarI CTCTTC 9 cut(s) 72, 311, 329, 407, 618, 666, 672, 678, 762
EciI GGCGGA 1 cut(s) 136
Eco31I GGTCTC 2 cut(s) 9, 83
Eco47I GGWCC 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 786
Eco81I CCTNAGG 1 cut(s) 236
Eco88I CYCGRG 1 cut(s) 184
FaeI CATG 9 cut(s) 23, 36, 154, 181, 196, 400, 473, 599, 755
FaqI GGGAC 4 cut(s) 123, 154, 201, 215
FatI CATG 9 cut(s) 19, 32, 150, 177, 192, 396, 469, 595, 751
Fnu4HI GCNGC 2 cut(s) 223, 515
FokI GGATG 9 cut(s) 93, 226, 254, 352, 593, 641, 666, 677, 728
Fsp4HI GCNGC 2 cut(s) 223, 515
GlaI GCGC 3 cut(s) 372, 374, 486
GluI GCNGC 2 cut(s) 223, 515
HaeIII GGCC 3 cut(s) 158, 545, 560
HapII CCGG 3 cut(s) 185, 198, 823
HhaI GCGC 3 cut(s) 373, 375, 487
Hin1I GRCGYC 1 cut(s) 231
Hin1II CATG 9 cut(s) 23, 36, 154, 181, 196, 400, 473, 599, 755
Hin6I GCGC 3 cut(s) 371, 373, 485
HinP1I GCGC 3 cut(s) 371, 373, 485
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HinfI GANTC 4 cut(s) 189, 251, 358, 382
HpaII CCGG 3 cut(s) 185, 198, 823
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 3 cut(s) 357, 363, 567
Hpy188III TCNNGA 4 cut(s) 12, 470, 527, 596
Hpy8I GTNNAC 1 cut(s) 229
HpyAV CCTTC 3 cut(s) 429, 451, 562
HpyCH4III ACNGT 2 cut(s) 260, 806
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 4 cut(s) 4, 298, 514, 745
HpyF10VI GCNNNNNNNGC 3 cut(s) 155, 547, 769
HpyF3I CTNAG 1 cut(s) 236
HpySE526I ACGT 1 cut(s) 231
Hsp92I GRCGYC 1 cut(s) 231
Hsp92II CATG 9 cut(s) 23, 36, 154, 181, 196, 400, 473, 599, 755
HspAI GCGC 3 cut(s) 371, 373, 485
Kzo9I GATC 5 cut(s) 6, 160, 180, 491, 852
LguI GCTCTTC 1 cut(s) 762
LmnI GCTCC 1 cut(s) 343
Lsp1109I GCAGC 2 cut(s) 209, 526
LweI GCATC 2 cut(s) 354, 475
MaeII ACGT 1 cut(s) 231
MalI GATC 5 cut(s) 8, 162, 182, 493, 854
MboI GATC 5 cut(s) 6, 160, 180, 491, 852
MflI RGATCY 2 cut(s) 6, 491
MluCI AATT 2 cut(s) 774, 796
MlyI GAGTC 1 cut(s) 183
MmeI TCCRAC 1 cut(s) 519
MroXI GAANNNNTTC 1 cut(s) 817
MslI CAYNNNNRTG 3 cut(s) 212, 600, 756
MspI CCGG 3 cut(s) 185, 198, 823
MspR9I CCNGG 4 cut(s) 185, 186, 199, 823
MvnI CGCG 1 cut(s) 373
MwoI GCNNNNNNNGC 3 cut(s) 155, 547, 769
NciI CCSGG 4 cut(s) 185, 186, 199, 823
NdeII GATC 5 cut(s) 6, 160, 180, 491, 852
NlaIII CATG 9 cut(s) 23, 36, 154, 181, 196, 400, 473, 599, 755
NlaIV GGNNCC 2 cut(s) 820, 840
NspI RCATGY 1 cut(s) 400
PagI TCATGA 2 cut(s) 469, 595
PauI GCGCGC 1 cut(s) 371
PciSI GCTCTTC 1 cut(s) 762
PdmI GAANNNNTTC 1 cut(s) 817
PfeI GAWTC 3 cut(s) 251, 358, 382
PkrI GCNGC 2 cut(s) 224, 516
PleI GAGTC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 183
PshAI GACNNNNGTC 1 cut(s) 193
PspN4I GGNNCC 2 cut(s) 820, 840
PspPI GGNCC 1 cut(s) 85
PsuI RGATCY 2 cut(s) 6, 491
PteI GCGCGC 1 cut(s) 371
RsaI GTAC 2 cut(s) 99, 749
RsaNI GTAC 2 cut(s) 98, 748
RseI CAYNNNNRTG 3 cut(s) 212, 600, 756
SapI GCTCTTC 1 cut(s) 762
SatI GCNGC 2 cut(s) 223, 515
Sau3AI GATC 5 cut(s) 6, 160, 180, 491, 852
Sau96I GGNCC 1 cut(s) 85
SchI GAGTC 1 cut(s) 183
ScrFI CCNGG 4 cut(s) 185, 186, 199, 823
SfaNI GCATC 2 cut(s) 354, 475
SinI GGWCC 1 cut(s) 85
SmaI CCCGGG 1 cut(s) 186
SmiMI CAYNNNNRTG 3 cut(s) 212, 600, 756
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
Sse9I AATT 2 cut(s) 774, 796
SsiI CCGC 1 cut(s) 147
StyD4I CCNGG 4 cut(s) 183, 184, 197, 821
TaaI ACNGT 2 cut(s) 260, 806
TaiI ACGT 1 cut(s) 234
TaqI TCGA 1 cut(s) 779
TaqII GACCGA 1 cut(s) 443
TasI AATT 2 cut(s) 774, 796
TfiI GAWTC 3 cut(s) 251, 358, 382
TscAI CASTG 3 cut(s) 263, 811, 849
TseI GCWGC 2 cut(s) 222, 514
TspDTI ATGAA 6 cut(s) 59, 258, 347, 636, 732, 854
TspGWI ACGGA 1 cut(s) 392
TspMI CCCGGG 1 cut(s) 184
TspRI CASTG 3 cut(s) 263, 811, 849
VpaK11BI GGWCC 1 cut(s) 85
XceI RCATGY 1 cut(s) 400
XmaI CCCGGG 1 cut(s) 184
XmnI GAANNNNTTC 1 cut(s) 817
ZraI GACGTC 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.