Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002468

Physical Location & Seq

Genomic Coordinates Reverse (-)

42030655 .. 42031758

Gene Structure 1104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G510300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGATTCTTTGAGTAGTGATCCAAGCTATTTTGGTAGAGCTAAATCCATAATTTCCTCCCTTTTTGGGATTTTCCTGTGGGCAACCAGGTTACCATTTGCAATGCAAATGGTAAAAGCATTCCCAACCCATCATCATCTTGAACTAGGGCTCAAAACCCTAAATTTTTCGGAAGCAGCTAGAAACCCTCAAATTTTAGATCATCACCACCCCCACATTATTCACAACCATAAGGTTTCACCAGCACCATCATCATCATCATCATCCGGATCGTCTTCACTCACTTCTTCTTGTATGTTGGATAGCTCTTTATCTTGGTCGTCCTCTGCAATGGACGACCTGATTGGTACGGACAGCGGCGTCCCAATCATGCTAACCAAGGAACAAGAGAAATTAGGATTTTTGAAAAATACAGTAGAATTTAGCATGAGTCGTAGGAATGAAGCTAAGAGCACCCGGAGTACTACTACTCGAAGGAGTGAAAAGATCAAGAGAGAATATCCACCACCAATACCATTGCTTGCACAGACTGGGAACTTGCAAGGTCGTATGCCCTGGATTTTTACCAAGCATTATGATCACTCTAATGGAAGGCTTGTCCTTAAAGGAGAGAGAGTGAAGCACCATGAGTACTTCGAAGCCCGCCGGGAGGACGGTCGCCTTATTTTGAACCTTGTACCTCTGGACAATGCCTTAGCATGTTTTGACAGTGCCCTAACATGTTGTGATGAAGAAAATGAAGAAGAGCTTGAAATGGACGAAGACCTCCAAACCGTCGATGAGGATGTTGGCGAGGTTGAGGAGGATGACGATGATGAATGTGATGAGAACAAGGTGAATGAGAATCACCAGGATGTGGAGAAGAAAGCAATGGATGTGATATCAGGTTATAATTCGGTGCCTCAGTCACATTTGAAGATGAGTATATTTGAAAGGTATCGAATTCGAAGTCTACCCAATTTGAAAAATGCAGGTAAGAACAATATGGTGGAGTTTGGTTCAACTTCATTTTATGATGTTTCTAAAAATATCCATGAGCACCCGCAGAGTTGCTTAGGCCACCCTGCTTCAGCTCCTCTTCGTCCAATGACTCCTGTCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAF

Protein Analysis

368

Amino Acids

41.37

Weight (kDa)

5.62

Isoelectric Point (pI)

67.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22110 AT1G22110 AT1G22110 AT1G77932
fragaria_vesca	FvH4_5g38140 FvH4_5g38160 FvH4_5g38160 FvH4_5g38160
malus_domestica	MD08G1176500.v1.1 MD08G1219800.v1.1 MD15G1363200.v1.1 MD15G1408400.v1.1 MD15G1409900.v1.1
prunus_persica	Prupe.1G096600_v2.0.a1 Prupe.1G510300_v2.0.a1 Prupe.1G510900_v2.0.a1 Prupe.1G552400_v2.0.a1
pyrus_communis	pycom08g19080 pycom15g32490
rosa_chinensis	RchiOBHm_Chr7g0240121
rosa_laevigata	RLG00000000700 RLG00000000701
rosa_multiflora	Rmu_sc0005008.1_g000021 Rmu_sc0005008.1_g000024
rosa_roxburghii	Rroxscaffold_3G00220390 Rroxscaffold_3G00220400
rosa_rugosa	Rorug04G0113200 Rorug07G0333300 Rorug07G0333500 Rorug07G0333600 Rorug07G0333700 Rorug07G0333800
rosa_samantha	Rh7AG487000 Rh7AG487200 Rh7BG459700 Rh7CG503800 Rh7CG503900 Rh7DG472100 Rh7DG472200
rosa_wichuraiana	Rw7G040810 Rw7G040820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	891
AasI	GACNNNNNNGTC	1 cut(s)	359
Acc36I	ACCTGC	1 cut(s)	962
AccB1I	GGYRCC	1 cut(s)	898
AccB7I	CCANNNNNTGG	1 cut(s)	856
AccI	GTMKAC	1 cut(s)	952
AccIII	TCCGGA	1 cut(s)	266
AciI	CCGC	3 cut(s)	357, 643, 1043
AclWI	GGATC	2 cut(s)	14, 277
AcsI	RAATTY	4 cut(s)	163, 192, 419, 942
AcuI	CTGAAG	1 cut(s)	1053
AcyI	GRCGYC	1 cut(s)	360
AfaI	GTAC	4 cut(s)	349, 463, 632, 678
AfiI	CCNNNNNNNGG	3 cut(s)	66, 649, 856
AflIII	ACRYGT	1 cut(s)	719
AgsI	TTSAA	8 cut(s)	143, 406, 670, 752, 916, 932, 964, 1002
AjnI	CCWGG	3 cut(s)	86, 554, 849
AluBI	AGCT	7 cut(s)	27, 41, 179, 306, 446, 748, 1073
AluI	AGCT	7 cut(s)	27, 41, 179, 306, 446, 748, 1073
Alw21I	GWGCWC	2 cut(s)	455, 1041
AlwI	GGATC	2 cut(s)	14, 277
Aor13HI	TCCGGA	1 cut(s)	266
AoxI	GGCC	1 cut(s)	1057
ApeKI	GCWGC	1 cut(s)	176
ApoI	RAATTY	4 cut(s)	163, 192, 419, 942
ArsI	GACNNNNNNTTYG	2 cut(s)	934, 966
AsuC2I	CCSGG	2 cut(s)	457, 647
AsuHPI	GGTGA	4 cut(s)	197, 231, 839, 847
AsuII	TTCGAA	2 cut(s)	636, 946
BaeGI	GKGCMC	1 cut(s)	715
BanI	GGYRCC	1 cut(s)	898
BanII	GRGCYC	1 cut(s)	153
BbsI	GAAGAC	2 cut(s)	267, 768
Bbv12I	GWGCWC	2 cut(s)	455, 1041
BbvI	GCAGC	1 cut(s)	188
BccI	CCATC	2 cut(s)	138, 256
BciT130I	CCWGG	3 cut(s)	88, 556, 851
BclI	TGATCA	1 cut(s)	577
BcnI	CCSGG	2 cut(s)	457, 647
BfaI	CTAG	2 cut(s)	146, 180
BfuAI	ACCTGC	1 cut(s)	962
BisI	GCNGC	2 cut(s)	177, 358
BlsI	GCNGC	2 cut(s)	178, 359
BmcAI	AGTACT	2 cut(s)	463, 632
Bme1390I	CCNGG	5 cut(s)	88, 457, 556, 647, 851
BmiI	GGNNCC	1 cut(s)	900
BmrFI	CCNGG	5 cut(s)	88, 457, 556, 647, 851
BmrI	ACTGGG	1 cut(s)	540
BmuI	ACTGGG	1 cut(s)	540
BoxI	GACNNNNGTC	1 cut(s)	1094
BpiI	GAAGAC	2 cut(s)	267, 768
Bpu10I	CCTNAGC	2 cut(s)	694, 1054
Bpu14I	TTCGAA	2 cut(s)	636, 946
BpuMI	CCSGG	2 cut(s)	457, 647
BsaHI	GRCGYC	1 cut(s)	360
BsaJI	CCNNGG	2 cut(s)	378, 554
BsaWI	WCCGGW	1 cut(s)	266
BsaXI	ACNNNNNCTCC	2 cut(s)	600, 630
Bsc4I	CCNNNNNNNGG	3 cut(s)	66, 649, 856
Bse1I	ACTGG	1 cut(s)	535
Bse3DI	GCAATG	4 cut(s)	108, 336, 515, 876
BseAI	TCCGGA	1 cut(s)	266
BseBI	CCWGG	3 cut(s)	88, 556, 851
BseDI	CCNNGG	2 cut(s)	378, 554
BseGI	GGATG	5 cut(s)	263, 790, 811, 859, 880
BseLI	CCNNNNNNNGG	3 cut(s)	66, 649, 856
BseMI	GCAATG	4 cut(s)	108, 336, 515, 876
BseMII	CTCAG	1 cut(s)	917
BseNI	ACTGG	1 cut(s)	535
BseRI	GAGGAG	2 cut(s)	815, 1065
BseSI	GKGCMC	1 cut(s)	715
BseXI	GCAGC	1 cut(s)	188
Bsh1285I	CGRYCG	1 cut(s)	658
BshFI	GGCC	1 cut(s)	1059
BshNI	GGYRCC	1 cut(s)	898
BsiEI	CGRYCG	1 cut(s)	658
BsiHKAI	GWGCWC	2 cut(s)	455, 1041
BsiSI	CCGG	3 cut(s)	267, 457, 646
BslFI	GGGAC	1 cut(s)	347
BslI	CCNNNNNNNGG	3 cut(s)	66, 649, 856
BsmFI	GGGAC	1 cut(s)	347
BsmI	GAATGC	1 cut(s)	119
BsnI	GGCC	1 cut(s)	1059
Bsp119I	TTCGAA	2 cut(s)	636, 946
Bsp1286I	GDGCHC	4 cut(s)	153, 455, 715, 1041
Bsp13I	TCCGGA	1 cut(s)	266
Bsp143I	GATC	5 cut(s)	19, 199, 269, 486, 577
BspACI	CCGC	3 cut(s)	357, 643, 1043
BspANI	GGCC	1 cut(s)	1059
BspCNI	CTCAG	1 cut(s)	916
BspEI	TCCGGA	1 cut(s)	266
BspLI	GGNNCC	1 cut(s)	900
BspMI	ACCTGC	1 cut(s)	962
BspPI	GGATC	2 cut(s)	14, 277
BspQI	GCTCTTC	1 cut(s)	738
BspT104I	TTCGAA	2 cut(s)	636, 946
BspT107I	GGYRCC	1 cut(s)	898
BsrDI	GCAATG	4 cut(s)	108, 336, 515, 876
BsrI	ACTGG	1 cut(s)	535
BssECI	CCNNGG	2 cut(s)	378, 554
BssMI	GATC	5 cut(s)	19, 199, 269, 486, 577
BssNI	GRCGYC	1 cut(s)	360
BssT1I	CCWWGG	1 cut(s)	378
Bst2UI	CCWGG	3 cut(s)	88, 556, 851
Bst4CI	ACNGT	4 cut(s)	415, 656, 710, 775
Bst6I	CTCTTC	2 cut(s)	738, 1083
BstACI	GRCGYC	1 cut(s)	360
BstBI	TTCGAA	2 cut(s)	636, 946
BstC8I	GCNNGC	2 cut(s)	522, 643
BstDEI	CTNAG	4 cut(s)	447, 694, 903, 1054
BstEII	GGTNACC	1 cut(s)	90
BstF5I	GGATG	5 cut(s)	263, 790, 811, 859, 880
BstKTI	GATC	5 cut(s)	22, 202, 272, 489, 580
BstMBI	GATC	5 cut(s)	19, 199, 269, 486, 577
BstMCI	CGRYCG	1 cut(s)	658
BstNI	CCWGG	3 cut(s)	88, 556, 851
BstNSI	RCATGY	2 cut(s)	702, 723
BstPAI	GACNNNNGTC	1 cut(s)	1094
BstPI	GGTNACC	1 cut(s)	90
BstSCI	CCNGG	5 cut(s)	86, 455, 554, 645, 849
BstSLI	GKGCMC	1 cut(s)	715
BstV1I	GCAGC	1 cut(s)	188
BstV2I	GAAGAC	2 cut(s)	267, 768
BsuRI	GGCC	1 cut(s)	1059
BtsCI	GGATG	5 cut(s)	263, 790, 811, 859, 880
BtsIMutI	CAGTG	1 cut(s)	715
BveI	ACCTGC	1 cut(s)	962
Cac8I	GCNNGC	2 cut(s)	522, 643
CseI	GACGC	1 cut(s)	349
CsiI	ACCWGGT	1 cut(s)	86
Csp6I	GTAC	4 cut(s)	348, 462, 631, 677
CviAII	CATG	7 cut(s)	370, 427, 626, 699, 720, 1034, 1099
CviQI	GTAC	4 cut(s)	348, 462, 631, 677
DdeI	CTNAG	4 cut(s)	447, 694, 903, 1054
DpnI	GATC	5 cut(s)	21, 201, 271, 488, 579
DpnII	GATC	5 cut(s)	19, 199, 269, 486, 577
DrdI	GACNNNNNNGTC	1 cut(s)	359
DseDI	GACNNNNNNGTC	1 cut(s)	359
Eam1104I	CTCTTC	2 cut(s)	738, 1083
EarI	CTCTTC	2 cut(s)	738, 1083
Eco130I	CCWWGG	1 cut(s)	378
Eco24I	GRGCYC	1 cut(s)	153
Eco32I	GATATC	1 cut(s)	882
Eco57I	CTGAAG	1 cut(s)	1053
Eco91I	GGTNACC	1 cut(s)	90
EcoO65I	GGTNACC	1 cut(s)	90
EcoRI	GAATTC	1 cut(s)	942
EcoRII	CCWGG	3 cut(s)	86, 554, 849
EcoRV	GATATC	1 cut(s)	882
EcoT14I	CCWWGG	1 cut(s)	378
EcoT38I	GRGCYC	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	378
FaeI	CATG	7 cut(s)	373, 430, 629, 702, 723, 1037, 1102
FalI	AAGNNNNNCTT	2 cut(s)	732, 764
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	7 cut(s)	369, 426, 625, 698, 719, 1033, 1098
FauI	CCCGC	2 cut(s)	650, 1050
FbaI	TGATCA	1 cut(s)	577
FblI	GTMKAC	1 cut(s)	952
Fnu4HI	GCNGC	2 cut(s)	177, 358
FokI	GGATG	5 cut(s)	250, 797, 818, 866, 887
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	2 cut(s)	177, 358
FspBI	CTAG	2 cut(s)	146, 180
GluI	GCNGC	2 cut(s)	177, 358
HaeIII	GGCC	1 cut(s)	1059
HapII	CCGG	3 cut(s)	267, 457, 646
HgaI	GACGC	1 cut(s)	349
Hin1I	GRCGYC	1 cut(s)	360
Hin1II	CATG	7 cut(s)	373, 430, 629, 702, 723, 1037, 1102
HinfI	GANTC	4 cut(s)	5, 430, 844, 1090
HpaII	CCGG	3 cut(s)	267, 457, 646
HphI	GGTGA	4 cut(s)	197, 231, 839, 847
Hpy166II	GTNNAC	1 cut(s)	953
Hpy188I	TCNGA	1 cut(s)	172
Hpy188III	TCNNGA	4 cut(s)	140, 267, 490, 683
Hpy8I	GTNNAC	1 cut(s)	953
Hpy99I	CGWCG	1 cut(s)	779
HpyAV	CCTTC	2 cut(s)	468, 585
HpyCH4III	ACNGT	4 cut(s)	415, 656, 710, 775
HpyCH4V	TGCA	6 cut(s)	101, 106, 329, 524, 541, 971
HpyF3I	CTNAG	4 cut(s)	447, 694, 903, 1054
Hsp92I	GRCGYC	1 cut(s)	360
Hsp92II	CATG	7 cut(s)	373, 430, 629, 702, 723, 1037, 1102
Kpn2I	TCCGGA	1 cut(s)	266
Ksp22I	TGATCA	1 cut(s)	577
Kzo9I	GATC	5 cut(s)	19, 199, 269, 486, 577
LguI	GCTCTTC	1 cut(s)	738
LmnI	GCTCC	1 cut(s)	1078
Lsp1109I	GCAGC	1 cut(s)	188
MabI	ACCWGGT	1 cut(s)	86
MaeI	CTAG	2 cut(s)	146, 180
MaeIII	GTNAC	2 cut(s)	90, 906
MalI	GATC	5 cut(s)	21, 201, 271, 488, 579
MboI	GATC	5 cut(s)	19, 199, 269, 486, 577
MboII	GAAGA	9 cut(s)	267, 279, 743, 752, 755, 773, 874, 928, 1070
MhlI	GDGCHC	4 cut(s)	153, 455, 715, 1041
MluCI	AATT	8 cut(s)	51, 163, 192, 392, 419, 892, 942, 958
MlyI	GAGTC	2 cut(s)	439, 1084
MmeI	TCCRAC	1 cut(s)	279
MroI	TCCGGA	1 cut(s)	266
MseI	TTAA	1 cut(s)	603
MslI	CAYNNNNRTG	2 cut(s)	585, 852
MspA1I	CMGCKG	1 cut(s)	357
MspI	CCGG	3 cut(s)	267, 457, 646
MspR9I	CCNGG	5 cut(s)	88, 457, 556, 647, 851
Mva1269I	GAATGC	1 cut(s)	119
MvaI	CCWGG	3 cut(s)	88, 556, 851
NciI	CCSGG	2 cut(s)	457, 647
NdeII	GATC	5 cut(s)	19, 199, 269, 486, 577
NlaIII	CATG	7 cut(s)	373, 430, 629, 702, 723, 1037, 1102
NlaIV	GGNNCC	1 cut(s)	900
NmuCI	GTSAC	1 cut(s)	906
NspI	RCATGY	2 cut(s)	702, 723
NspV	TTCGAA	2 cut(s)	636, 946
PciI	ACATGT	1 cut(s)	719
PciSI	GCTCTTC	1 cut(s)	738
PctI	GAATGC	1 cut(s)	119
PfeI	GAWTC	2 cut(s)	5, 844
PflMI	CCANNNNNTGG	1 cut(s)	856
PkrI	GCNGC	2 cut(s)	178, 359
PleI	GAGTC	2 cut(s)	438, 1084
PpsI	GAGTC	2 cut(s)	438, 1084
PscI	ACATGT	1 cut(s)	719
PshAI	GACNNNNGTC	1 cut(s)	1094
PsiI	TTATAA	1 cut(s)	891
Psp6I	CCWGG	3 cut(s)	86, 554, 849
PspEI	GGTNACC	1 cut(s)	90
PspGI	CCWGG	3 cut(s)	86, 554, 849
PspN4I	GGNNCC	1 cut(s)	900
RsaI	GTAC	4 cut(s)	349, 463, 632, 678
RsaNI	GTAC	4 cut(s)	348, 462, 631, 677
RseI	CAYNNNNRTG	2 cut(s)	585, 852
SapI	GCTCTTC	1 cut(s)	738
SaqAI	TTAA	1 cut(s)	603
SatI	GCNGC	2 cut(s)	177, 358
Sau3AI	GATC	5 cut(s)	19, 199, 269, 486, 577
ScaI	AGTACT	2 cut(s)	463, 632
SchI	GAGTC	2 cut(s)	439, 1084
ScrFI	CCNGG	5 cut(s)	88, 457, 556, 647, 851
SduI	GDGCHC	4 cut(s)	153, 455, 715, 1041
SexAI	ACCWGGT	1 cut(s)	86
SfuI	TTCGAA	2 cut(s)	636, 946
SmiMI	CAYNNNNRTG	2 cut(s)	585, 852
Sse9I	AATT	8 cut(s)	51, 163, 192, 392, 419, 892, 942, 958
SsiI	CCGC	3 cut(s)	357, 643, 1043
SspMI	CTAG	2 cut(s)	146, 180
StyD4I	CCNGG	5 cut(s)	86, 455, 554, 645, 849
StyI	CCWWGG	1 cut(s)	378
TaaI	ACNGT	4 cut(s)	415, 656, 710, 775
TaqI	TCGA	5 cut(s)	472, 636, 777, 940, 946
TasI	AATT	8 cut(s)	51, 163, 192, 392, 419, 892, 942, 958
TatI	WGTACW	2 cut(s)	461, 630
TauI	GCSGC	1 cut(s)	360
TfiI	GAWTC	2 cut(s)	5, 844
Tru1I	TTAA	1 cut(s)	603
Tru9I	TTAA	1 cut(s)	603
TscAI	CASTG	1 cut(s)	715
TseFI	GTSAC	1 cut(s)	906
TseI	GCWGC	1 cut(s)	176
Tsp45I	GTSAC	1 cut(s)	906
TspDTI	ATGAA	5 cut(s)	456, 744, 753, 831, 996
TspGWI	ACGGA	1 cut(s)	365
TspRI	CASTG	1 cut(s)	715
Van91I	CCANNNNNTGG	1 cut(s)	856
XapI	RAATTY	4 cut(s)	163, 192, 419, 942
XceI	RCATGY	2 cut(s)	702, 723
XmiI	GTMKAC	1 cut(s)	952
XspI	CTAG	2 cut(s)	146, 180
ZrmI	AGTACT	2 cut(s)	463, 632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.