MD15G1363200.v1.1

Fantastic Four meristem regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0002468
Physical Location & Seq
Forward (+)
43838475 .. 43841930
3456 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1363200.v1.1.491

Sequence Viewer

Length: 828 bp
ATGCACTTGTATAATAACACCATGCAGATCCCCAATGAGCCTCGCCCATGCCAAAACCAAACTCCAACCCGCCTAGGATTTGGTTTCAAGGCCTTAATCCTAGACCCCAAAAAAAACCCATCTCATAAAACTTGCTCCATGACGCTCTCCGACTTGCTATCCCCAACTTCCTCTTCTCTTTTGAGTGGAGATTACATTGGAATGGAGAGCTCGACTGACGTGCTTAAGGACGGTGAGGATCATCAACTGCTACCGAAGGTGACCGGTAGTGGTGGTGATGGGCATGATGGTAATTTTGGTCAGAGGGTAAGGAGTAGGAGGGAGCAAAAATGGGCATTGAAGAATAAGGAGTTTCCACCTCCTATACCTTTGTTGGCACGCACTGAGAACTTGCCCTCTCGTATGCCTTGGGTGTTGAAGAGGCATTGCACAGATGATGGGAGATTGATTCTCACGGAGGAGAAGGTTAGGCATCATGAGTACTTCAGGGCTCATAGGTCAAATGGCAGGCTCACTTTGCAGCTTATACCGCTTGATGATGAGATTTTGATTTCCCCATTTGCTTGCAATGGGAATGGGAATGGGAATGAGAACGAGAATCATAATGGGAATGATGATGATAATGATGTTGGTGAAGGTGGCCACGACGACAACGATAGTTGTGAAGATGATGACGAGGATGATGTGGTTGAAGATAAAAAAAATAGTGGGACTGGGGCATCAGCAGCTTCAGCCGGGAAGTGCTTTAGTTTCAATAGCGTGGGAACAGGTTCACCCTGCATATTTGGAGTGCCAGTGCTGCCAACCATCAGGCATGTTCACAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

276

Amino Acids

30.24

Weight (kDa)

5.42

Isoelectric Point (pI)

43.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 117 - 175 1.9e-20 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 70, 530
AclWI GGATC 2 cut(s) 22, 246
AcoI YGGCCR 1 cut(s) 640
AcuI CTGAAG 2 cut(s) 469, 714
AfaI GTAC 1 cut(s) 482
AflII CTTAAG 1 cut(s) 224
AgeI ACCGGT 1 cut(s) 263
AgsI TTSAA 5 cut(s) 88, 340, 418, 692, 754
AjiI CACGTC 1 cut(s) 220
AjuI GAANNNNNNNTTGG 2 cut(s) 157, 189
AluBI AGCT 3 cut(s) 210, 523, 728
AluI AGCT 3 cut(s) 210, 523, 728
Alw21I GWGCWC 1 cut(s) 212
AlwI GGATC 2 cut(s) 22, 246
AoxI GGCC 2 cut(s) 90, 640
ApeKI GCWGC 3 cut(s) 520, 725, 799
AsiGI ACCGGT 1 cut(s) 263
Asp700I GAANNNNTTC 1 cut(s) 769
AspA2I CCTAGG 1 cut(s) 73
AsuC2I CCSGG 1 cut(s) 736
AsuHPI GGTGA 5 cut(s) 245, 271, 287, 644, 765
AvrII CCTAGG 1 cut(s) 73
BalI TGGCCA 1 cut(s) 642
BanII GRGCYC 2 cut(s) 212, 493
Bbv12I GWGCWC 1 cut(s) 212
BbvI GCAGC 3 cut(s) 532, 737, 786
BccI CCATC 5 cut(s) 127, 272, 281, 431, 815
BcgI CGANNNNNNTGC 2 cut(s) 202, 236
BcnI CCSGG 1 cut(s) 736
BfaI CTAG 2 cut(s) 74, 101
BfrI CTTAAG 1 cut(s) 224
BisI GCNGC 3 cut(s) 521, 726, 800
BlnI CCTAGG 1 cut(s) 73
BlsI GCNGC 3 cut(s) 522, 727, 801
BmcAI AGTACT 1 cut(s) 482
Bme1390I CCNGG 1 cut(s) 736
BmgBI CACGTC 1 cut(s) 220
BmrFI CCNGG 1 cut(s) 736
BmrI ACTGGG 1 cut(s) 723
BmsI GCATC 2 cut(s) 481, 728
BmuI ACTGGG 1 cut(s) 723
BpuMI CCSGG 1 cut(s) 736
BsaJI CCNNGG 2 cut(s) 73, 407
BsaWI WCCGGW 1 cut(s) 263
BsaXI ACNNNNNCTCC 2 cut(s) 780, 810
Bse118I RCCGGY 1 cut(s) 263
Bse1I ACTGG 2 cut(s) 718, 794
Bse3DI GCAATG 2 cut(s) 424, 574
BseDI CCNNGG 2 cut(s) 73, 407
BseGI GGATG 1 cut(s) 685
BseMI GCAATG 2 cut(s) 424, 574
BseMII CTCAG 1 cut(s) 375
BseNI ACTGG 2 cut(s) 718, 794
BseRI GAGGAG 1 cut(s) 473
BseXI GCAGC 3 cut(s) 532, 737, 786
BshFI GGCC 2 cut(s) 92, 642
BshTI ACCGGT 1 cut(s) 263
BsiHKAI GWGCWC 1 cut(s) 212
BsiSI CCGG 2 cut(s) 264, 735
BslFI GGGAC 1 cut(s) 724
BsmFI GGGAC 1 cut(s) 724
BsnI GGCC 2 cut(s) 92, 642
Bsp1286I GDGCHC 2 cut(s) 212, 493
Bsp143I GATC 2 cut(s) 27, 238
BspACI CCGC 2 cut(s) 70, 530
BspANI GGCC 2 cut(s) 92, 642
BspCNI CTCAG 1 cut(s) 376
BspHI TCATGA 1 cut(s) 475
BspPI GGATC 2 cut(s) 22, 246
BspTI CTTAAG 1 cut(s) 224
BsrDI GCAATG 2 cut(s) 424, 574
BsrFI RCCGGY 1 cut(s) 263
BsrI ACTGG 2 cut(s) 718, 794
BssAI RCCGGY 1 cut(s) 263
BssECI CCNNGG 2 cut(s) 73, 407
BssMI GATC 2 cut(s) 27, 238
BssT1I CCWWGG 2 cut(s) 73, 407
Bst4CI ACNGT 2 cut(s) 233, 824
Bst6I CTCTTC 2 cut(s) 178, 413
BstAFI CTTAAG 1 cut(s) 224
BstC8I GCNNGC 3 cut(s) 379, 509, 565
BstDEI CTNAG 1 cut(s) 384
BstEII GGTNACC 1 cut(s) 259
BstF5I GGATG 1 cut(s) 685
BstKTI GATC 2 cut(s) 30, 241
BstMBI GATC 2 cut(s) 27, 238
BstMWI GCNNNNNNNGC 5 cut(s) 517, 529, 725, 731, 799
BstNSI RCATGY 1 cut(s) 818
BstPI GGTNACC 1 cut(s) 259
BstSCI CCNGG 1 cut(s) 734
BstV1I GCAGC 3 cut(s) 532, 737, 786
BstX2I RGATCY 1 cut(s) 27
BstYI RGATCY 1 cut(s) 27
BsuRI GGCC 2 cut(s) 92, 642
BtrI CACGTC 1 cut(s) 220
BtsCI GGATG 1 cut(s) 685
BtsIMutI CAGTG 2 cut(s) 381, 801
Cac8I GCNNGC 3 cut(s) 379, 509, 565
CciI TCATGA 1 cut(s) 475
Cfr10I RCCGGY 1 cut(s) 263
CseI GACGC 1 cut(s) 151
Csp6I GTAC 1 cut(s) 481
CspAI ACCGGT 1 cut(s) 263
CviAII CATG 6 cut(s) 22, 48, 139, 284, 476, 815
CviJI RGCY 9 cut(s) 40, 92, 210, 491, 511, 523, 642, 728, 734
CviKI_1 RGCY 9 cut(s) 40, 92, 210, 491, 511, 523, 642, 728, 734
CviQI GTAC 1 cut(s) 481
DdeI CTNAG 1 cut(s) 384
DpnI GATC 2 cut(s) 29, 240
DpnII GATC 2 cut(s) 27, 238
EaeI YGGCCR 1 cut(s) 640
Eam1104I CTCTTC 2 cut(s) 178, 413
EarI CTCTTC 2 cut(s) 178, 413
Ecl136II GAGCTC 1 cut(s) 210
Eco130I CCWWGG 2 cut(s) 73, 407
Eco147I AGGCCT 1 cut(s) 92
Eco24I GRGCYC 2 cut(s) 212, 493
Eco53kI GAGCTC 1 cut(s) 210
Eco57I CTGAAG 2 cut(s) 469, 714
Eco91I GGTNACC 1 cut(s) 259
EcoICRI GAGCTC 1 cut(s) 210
EcoO65I GGTNACC 1 cut(s) 259
EcoT14I CCWWGG 2 cut(s) 73, 407
EcoT38I GRGCYC 2 cut(s) 212, 493
ErhI CCWWGG 2 cut(s) 73, 407
FaeI CATG 6 cut(s) 25, 51, 142, 287, 479, 818
FaqI GGGAC 1 cut(s) 724
FatI CATG 6 cut(s) 21, 47, 138, 283, 475, 814
FauI CCCGC 1 cut(s) 77
Fnu4HI GCNGC 3 cut(s) 521, 726, 800
FokI GGATG 1 cut(s) 692
FriOI GRGCYC 2 cut(s) 212, 493
Fsp4HI GCNGC 3 cut(s) 521, 726, 800
FspBI CTAG 2 cut(s) 74, 101
GluI GCNGC 3 cut(s) 521, 726, 800
HaeIII GGCC 2 cut(s) 92, 642
HapII CCGG 2 cut(s) 264, 735
HgaI GACGC 1 cut(s) 151
Hin1II CATG 6 cut(s) 25, 51, 142, 287, 479, 818
HinfI GANTC 2 cut(s) 448, 598
HpaII CCGG 2 cut(s) 264, 735
HphI GGTGA 5 cut(s) 245, 271, 287, 644, 765
Hpy166II GTNNAC 2 cut(s) 773, 820
Hpy188I TCNGA 2 cut(s) 151, 303
Hpy188III TCNNGA 1 cut(s) 476
Hpy8I GTNNAC 2 cut(s) 773, 820
Hpy99I CGWCG 1 cut(s) 650
HpyAV CCTTC 3 cut(s) 250, 457, 629
HpyCH4III ACNGT 2 cut(s) 233, 824
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 6 cut(s) 4, 25, 429, 520, 567, 780
HpyF10VI GCNNNNNNNGC 5 cut(s) 517, 529, 725, 731, 799
HpyF3I CTNAG 1 cut(s) 384
HpySE526I ACGT 1 cut(s) 219
Hsp92II CATG 6 cut(s) 25, 51, 142, 287, 479, 818
Kzo9I GATC 2 cut(s) 27, 238
LmnI GCTCC 2 cut(s) 140, 322
LpnPI CCDG 9 cut(s) 277, 472, 493, 699, 748, 753, 790, 796, 807
Lsp1109I GCAGC 3 cut(s) 532, 737, 786
LweI GCATC 2 cut(s) 481, 728
MaeI CTAG 2 cut(s) 74, 101
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 1 cut(s) 259
MalI GATC 2 cut(s) 29, 240
MboI GATC 2 cut(s) 27, 238
MboII GAAGA 5 cut(s) 165, 352, 430, 677, 704
MflI RGATCY 1 cut(s) 27
MhlI GDGCHC 2 cut(s) 212, 493
MlsI TGGCCA 1 cut(s) 642
MluCI AATT 1 cut(s) 292
MluNI TGGCCA 1 cut(s) 642
MmeI TCCRAC 2 cut(s) 89, 174
Mox20I TGGCCA 1 cut(s) 642
MroXI GAANNNNTTC 1 cut(s) 769
MscI TGGCCA 1 cut(s) 642
MseI TTAA 2 cut(s) 95, 225
MslI CAYNNNNRTG 1 cut(s) 200
Msp20I TGGCCA 1 cut(s) 642
MspCI CTTAAG 1 cut(s) 224
MspI CCGG 2 cut(s) 264, 735
MspR9I CCNGG 1 cut(s) 736
MwoI GCNNNNNNNGC 5 cut(s) 517, 529, 725, 731, 799
NciI CCSGG 1 cut(s) 736
NdeII GATC 2 cut(s) 27, 238
NlaIII CATG 6 cut(s) 25, 51, 142, 287, 479, 818
NmuCI GTSAC 1 cut(s) 259
NspI RCATGY 1 cut(s) 818
PagI TCATGA 1 cut(s) 475
PceI AGGCCT 1 cut(s) 92
PcsI WCGNNNNNNNCGW 1 cut(s) 651
PdmI GAANNNNTTC 1 cut(s) 769
PfeI GAWTC 2 cut(s) 448, 598
PinAI ACCGGT 1 cut(s) 263
PkrI GCNGC 3 cut(s) 522, 727, 801
Psp124BI GAGCTC 1 cut(s) 212
PspEI GGTNACC 1 cut(s) 259
PsuI RGATCY 1 cut(s) 27
RsaI GTAC 1 cut(s) 482
RsaNI GTAC 1 cut(s) 481
RseI CAYNNNNRTG 1 cut(s) 200
SacI GAGCTC 1 cut(s) 212
SaqAI TTAA 2 cut(s) 95, 225
SatI GCNGC 3 cut(s) 521, 726, 800
Sau3AI GATC 2 cut(s) 27, 238
ScaI AGTACT 1 cut(s) 482
ScrFI CCNGG 1 cut(s) 736
SduI GDGCHC 2 cut(s) 212, 493
SfaNI GCATC 2 cut(s) 481, 728
SmiMI CAYNNNNRTG 1 cut(s) 200
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 1 cut(s) 292
SseBI AGGCCT 1 cut(s) 92
SsiI CCGC 2 cut(s) 70, 530
SspMI CTAG 2 cut(s) 74, 101
SstI GAGCTC 1 cut(s) 212
StuI AGGCCT 1 cut(s) 92
StyD4I CCNGG 1 cut(s) 734
StyI CCWWGG 2 cut(s) 73, 407
TaaI ACNGT 2 cut(s) 233, 824
TaiI ACGT 1 cut(s) 222
TaqI TCGA 1 cut(s) 212
TasI AATT 1 cut(s) 292
TatI WGTACW 1 cut(s) 480
TfiI GAWTC 2 cut(s) 448, 598
Tru1I TTAA 2 cut(s) 95, 225
Tru9I TTAA 2 cut(s) 95, 225
TscAI CASTG 2 cut(s) 388, 801
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 3 cut(s) 520, 725, 799
Tsp45I GTSAC 1 cut(s) 259
TspGWI ACGGA 1 cut(s) 470
TspRI CASTG 2 cut(s) 388, 801
Vha464I CTTAAG 1 cut(s) 224
XceI RCATGY 1 cut(s) 818
XmaJI CCTAGG 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 769
XspI CTAG 2 cut(s) 74, 101
ZrmI AGTACT 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.