MD15G1408400.v1.1

Fantastic Four meristem regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0002468
Physical Location & Seq
Forward (+)
50838898 .. 50842345
3448 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1408400.v1.1.491

Sequence Viewer

Length: 1218 bp
ATGCAGATCCCTAATACAAGGCGGATCACTAATAGTCCCATGTATTCTAATCCATGCCAATCCCAATCCGAAATCCAATATTCCTATCCTCCTCTTGAATTGAGCCTCAAGCCCCTCATTACTTTTGAACCCCAACAAAACCCTTCTCTTAGTAGAAGCTGCTCCTCCACCTCCATTGATACCATGGTCTCCGACTTATTTTCCCCGACCTCCTCCTCCTCCTCCTCCTCCTCCTCACTATTAATGTCTGGGGACTACATTGGCATGGAGTCCTGTGTCGACGTTCTAAGCGACGATGAGTTGAGTTTTGGTCACCGTCATCATGGTTGTTATAGTCAGAGAAAAGAAATGTTATGTTGGGCGCAGGAGAAGGAGAAGAAGAGAACTTATGAGGAACTTCCACCTCCGATTCCGTTGCTGGCGCGTACGGAGAATCTGACTTCTCACATGCCTTGGGTTTTGAAGAGGCACTACACCACCGATGGACGGTTGATTTTGACGGAGGAGAAGGTTAGGCACCATGAGTACTTCAGGGCCCACAGATCCAATGGCCGTCTTAGATTGCAGCTTGTCCCTCTTGATGGCCAGGCTTTGGTTCCGCCAATCATTTGTTGCAATGATGAGCATGAGGAGGTGGATGATCATGATGGTTACTGTAGTGAGTACGAGGATCATGTATTCTACGATGACGATCTGGCTGCTTATGATGGTGATTATGATTACGATTACGATTATGATTATGACGATGACCGCGATAGTGATGGTACCAGTGTTGATGGTTGTCATCATCATGGTGATGCTGAACAAATATTTGATGCTGTTAGTTCAACAACTGGATTAGCTGGGAAGTGTCTCAATATCAATGCTGTGAGAACACGGTCGTGCAACTTGGGAGTGCGAGCGCCAGCGATCAGATGTGTCAAGGCCAATACAAATGGATCAAGAAAAGTCTTTCTGGGGCAAGCAGCTGGATTTGGTGGGTTATTTGGAGGCCTTGCTGGTCGAGTTATGATCAGCGCTTTTTGTGAGCCTGTCGGAATCTCCTTTACACATAGGGTTAAGCTTGCAGCCTGCATCTTTGCTATAATCACAGCTTGGGAGAAGGGTTGGTCACTTTATGGTTGGAAACAGATCCTAAGTTGGTCCTATTTCTTTTCTCTAAACCCCTTTCTGCTCGTTGGTCTCTGCGTTCTCAGTGGATACATTGTCGTGACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

406

Amino Acids

45.43

Weight (kDa)

5.28

Isoelectric Point (pI)

52.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 132 - 190 6.3e-20 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 764
AccB1I GGYRCC 2 cut(s) 516, 764
AccB7I CCANNNNNTGG 1 cut(s) 592
AccI GTMKAC 1 cut(s) 279
AccII CGCG 2 cut(s) 424, 753
AciI CCGC 3 cut(s) 22, 599, 751
AclWI GGATC 5 cut(s) 32, 537, 678, 946, 1126
AcoI YGGCCR 2 cut(s) 550, 583
AcuI CTGAAG 1 cut(s) 514
AfaI GTAC 4 cut(s) 427, 527, 665, 766
AfeI AGCGCT 1 cut(s) 1018
AfiI CCNNNNNNNGG 3 cut(s) 486, 581, 592
AgsI TTSAA 4 cut(s) 98, 128, 463, 828
AjnI CCWGG 1 cut(s) 585
AleI CACNNNNGTG 1 cut(s) 880
AluBI AGCT 6 cut(s) 159, 568, 842, 968, 1063, 1094
AluI AGCT 6 cut(s) 159, 568, 842, 968, 1063, 1094
Alw26I GTCTC 3 cut(s) 193, 857, 1187
AlwI GGATC 5 cut(s) 32, 537, 678, 946, 1126
Aor51HI AGCGCT 1 cut(s) 1018
AoxI GGCC 5 cut(s) 534, 550, 583, 924, 991
ApaI GGGCCC 1 cut(s) 538
ApeKI GCWGC 5 cut(s) 159, 565, 698, 965, 1067
AseI ATTAAT 1 cut(s) 242
Asp718I GGTACC 1 cut(s) 764
AspLEI GCGC 4 cut(s) 364, 424, 904, 1019
AspS9I GGNCC 3 cut(s) 534, 535, 1143
AsuHPI GGTGA 3 cut(s) 305, 722, 806
AvaII GGWCC 1 cut(s) 1143
BaeGI GKGCMC 1 cut(s) 538
BaeI ACNNNNGTAYC 4 cut(s) 171, 204, 756, 789
BalI TGGCCA 1 cut(s) 585
BanI GGYRCC 2 cut(s) 516, 764
BanII GRGCYC 1 cut(s) 538
BarI GAAGNNNNNNTAC 2 cut(s) 455, 487
BbvI GCAGC 5 cut(s) 146, 577, 685, 977, 1079
BccI CCATC 6 cut(s) 476, 575, 641, 701, 755, 770
BceAI ACGGC 1 cut(s) 537
BcgI CGANNNNNNTGC 4 cut(s) 397, 431, 680, 714
BciT130I CCWGG 1 cut(s) 587
BciVI GTATCC 1 cut(s) 1193
BclI TGATCA 2 cut(s) 640, 1011
BcoDI GTCTC 3 cut(s) 193, 857, 1187
BfmI CTRYAG 1 cut(s) 655
BfoI RGCGCY 2 cut(s) 905, 1020
BfuI GTATCC 1 cut(s) 1193
BisI GCNGC 5 cut(s) 160, 566, 699, 966, 1068
BlsI GCNGC 5 cut(s) 161, 567, 700, 967, 1069
BmcAI AGTACT 1 cut(s) 527
Bme1390I CCNGG 1 cut(s) 587
Bme18I GGWCC 1 cut(s) 1143
BmgT120I GGNCC 3 cut(s) 534, 535, 1143
BmiI GGNNCC 4 cut(s) 518, 536, 597, 766
BmrFI CCNGG 1 cut(s) 587
BmsI GCATC 3 cut(s) 787, 805, 1083
BpuEI CTTGAG 1 cut(s) 92
BsaBI GATNNNNATC 1 cut(s) 690
BsaI GGTCTC 2 cut(s) 193, 1187
BsaJI CCNNGG 2 cut(s) 183, 452
Bsc4I CCNNNNNNNGG 3 cut(s) 486, 581, 592
Bse1I ACTGG 2 cut(s) 768, 838
Bse3DI GCAATG 1 cut(s) 622
Bse8I GATNNNNATC 1 cut(s) 690
BseBI CCWGG 1 cut(s) 587
BseDI CCNNGG 2 cut(s) 183, 452
BseGI GGATG 1 cut(s) 643
BseJI GATNNNNATC 1 cut(s) 690
BseLI CCNNNNNNNGG 3 cut(s) 486, 581, 592
BseMI GCAATG 1 cut(s) 622
BseMII CTCAG 1 cut(s) 1207
BseNI ACTGG 2 cut(s) 768, 838
BseSI GKGCMC 1 cut(s) 538
BseXI GCAGC 5 cut(s) 146, 577, 685, 977, 1079
BseYI CCCAGC 1 cut(s) 842
Bsh1236I CGCG 2 cut(s) 424, 753
Bsh1285I CGRYCG 1 cut(s) 881
BshFI GGCC 5 cut(s) 536, 552, 585, 926, 993
BshNI GGYRCC 2 cut(s) 516, 764
BsiEI CGRYCG 1 cut(s) 881
BsiWI CGTACG 1 cut(s) 425
BslFI GGGAC 3 cut(s) 21, 266, 557
BslI CCNNNNNNNGG 3 cut(s) 486, 581, 592
BsmAI GTCTC 3 cut(s) 193, 857, 1187
BsmFI GGGAC 3 cut(s) 21, 266, 557
BsnI GGCC 5 cut(s) 536, 552, 585, 926, 993
Bso31I GGTCTC 2 cut(s) 193, 1187
Bsp120I GGGCCC 1 cut(s) 534
Bsp1286I GDGCHC 1 cut(s) 538
Bsp19I CCATGG 1 cut(s) 183
BspACI CCGC 3 cut(s) 22, 599, 751
BspANI GGCC 5 cut(s) 536, 552, 585, 926, 993
BspCNI CTCAG 1 cut(s) 1206
BspFNI CGCG 2 cut(s) 424, 753
BspHI TCATGA 1 cut(s) 643
BspLI GGNNCC 4 cut(s) 518, 536, 597, 766
BspPI GGATC 5 cut(s) 32, 537, 678, 946, 1126
BspT107I GGYRCC 2 cut(s) 516, 764
BspTNI GGTCTC 2 cut(s) 193, 1187
BsrDI GCAATG 1 cut(s) 622
BsrI ACTGG 2 cut(s) 768, 838
BssECI CCNNGG 2 cut(s) 183, 452
BssT1I CCWWGG 2 cut(s) 183, 452
Bst2UI CCWGG 1 cut(s) 587
Bst4CI ACNGT 4 cut(s) 317, 489, 656, 879
Bst6I CTCTTC 2 cut(s) 374, 458
BstC8I GCNNGC 6 cut(s) 420, 900, 906, 963, 1065, 1072
BstDEI CTNAG 5 cut(s) 149, 287, 557, 1136, 1193
BstDSI CCRYGG 1 cut(s) 183
BstEII GGTNACC 1 cut(s) 311
BstF5I GGATG 1 cut(s) 643
BstFNI CGCG 2 cut(s) 424, 753
BstH2I RGCGCY 2 cut(s) 905, 1020
BstHHI GCGC 4 cut(s) 364, 424, 904, 1019
BstMAI GTCTC 3 cut(s) 193, 857, 1187
BstMCI CGRYCG 1 cut(s) 881
BstNI CCWGG 1 cut(s) 587
BstNSI RCATGY 1 cut(s) 451
BstPI GGTNACC 1 cut(s) 311
BstSCI CCNGG 1 cut(s) 585
BstSFI CTRYAG 1 cut(s) 655
BstSLI GKGCMC 1 cut(s) 538
BstUI CGCG 2 cut(s) 424, 753
BstV1I GCAGC 5 cut(s) 146, 577, 685, 977, 1079
BstX2I RGATCY 3 cut(s) 6, 542, 1131
BstYI RGATCY 3 cut(s) 6, 542, 1131
BsuI GTATCC 1 cut(s) 1193
BsuRI GGCC 5 cut(s) 536, 552, 585, 926, 993
BtgI CCRYGG 1 cut(s) 183
BtsCI GGATG 1 cut(s) 643
BtsIMutI CAGTG 2 cut(s) 775, 1201
Cac8I GCNNGC 6 cut(s) 420, 900, 906, 963, 1065, 1072
CciI TCATGA 1 cut(s) 643
CfoI GCGC 4 cut(s) 364, 424, 904, 1019
Cfr13I GGNCC 3 cut(s) 534, 535, 1143
Csp6I GTAC 4 cut(s) 426, 526, 664, 765
CspCI CAANNNNNGTGG 2 cut(s) 157, 192
CviQI GTAC 4 cut(s) 426, 526, 664, 765
DdeI CTNAG 5 cut(s) 149, 287, 557, 1136, 1193
EaeI YGGCCR 2 cut(s) 550, 583
Eam1104I CTCTTC 2 cut(s) 374, 458
EarI CTCTTC 2 cut(s) 374, 458
EciI GGCGGA 2 cut(s) 37, 588
Eco130I CCWWGG 2 cut(s) 183, 452
Eco147I AGGCCT 1 cut(s) 993
Eco24I GRGCYC 1 cut(s) 538
Eco31I GGTCTC 2 cut(s) 193, 1187
Eco47I GGWCC 1 cut(s) 1143
Eco47III AGCGCT 1 cut(s) 1018
Eco57I CTGAAG 1 cut(s) 514
Eco91I GGTNACC 1 cut(s) 311
EcoO109I RGGNCCY 1 cut(s) 534
EcoO65I GGTNACC 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 585
EcoT14I CCWWGG 2 cut(s) 183, 452
EcoT38I GRGCYC 1 cut(s) 538
ErhI CCWWGG 2 cut(s) 183, 452
FaqI GGGAC 3 cut(s) 21, 266, 557
FbaI TGATCA 2 cut(s) 640, 1011
FblI GTMKAC 1 cut(s) 279
Fnu4HI GCNGC 5 cut(s) 160, 566, 699, 966, 1068
FokI GGATG 1 cut(s) 650
FriOI GRGCYC 1 cut(s) 538
Fsp4HI GCNGC 5 cut(s) 160, 566, 699, 966, 1068
GlaI GCGC 4 cut(s) 363, 423, 903, 1018
GluI GCNGC 5 cut(s) 160, 566, 699, 966, 1068
GsaI CCCAGC 1 cut(s) 846
HaeII RGCGCY 2 cut(s) 905, 1020
HaeIII GGCC 5 cut(s) 536, 552, 585, 926, 993
HhaI GCGC 4 cut(s) 364, 424, 904, 1019
Hin6I GCGC 4 cut(s) 362, 422, 902, 1017
HinP1I GCGC 4 cut(s) 362, 422, 902, 1017
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HindIII AAGCTT 1 cut(s) 1061
HinfI GANTC 4 cut(s) 269, 409, 433, 1038
HphI GGTGA 3 cut(s) 305, 722, 806
Hpy166II GTNNAC 1 cut(s) 280
Hpy188I TCNGA 7 cut(s) 70, 193, 339, 408, 438, 914, 1037
Hpy188III TCNNGA 5 cut(s) 95, 578, 644, 942, 1210
Hpy8I GTNNAC 1 cut(s) 280
Hpy99I CGWCG 2 cut(s) 284, 296
HpyAV CCTTC 4 cut(s) 153, 364, 502, 1096
HpyCH4III ACNGT 4 cut(s) 317, 489, 656, 879
HpyCH4IV ACGT 1 cut(s) 282
HpyCH4V TGCA 6 cut(s) 4, 565, 615, 885, 1067, 1074
HpyF3I CTNAG 5 cut(s) 149, 287, 557, 1136, 1193
HpySE526I ACGT 1 cut(s) 282
HspAI GCGC 4 cut(s) 362, 422, 902, 1017
KpnI GGTACC 1 cut(s) 768
Ksp22I TGATCA 2 cut(s) 640, 1011
LmnI GCTCC 1 cut(s) 167
Lsp1109I GCAGC 5 cut(s) 146, 577, 685, 977, 1079
LweI GCATC 3 cut(s) 787, 805, 1083
MaeII ACGT 1 cut(s) 282
MaeIII GTNAC 4 cut(s) 311, 650, 1110, 1210
MboII GAAGA 3 cut(s) 388, 391, 475
MflI RGATCY 3 cut(s) 6, 542, 1131
MhlI GDGCHC 1 cut(s) 538
MlsI TGGCCA 1 cut(s) 585
MluCI AATT 1 cut(s) 98
MluNI TGGCCA 1 cut(s) 585
MlyI GAGTC 1 cut(s) 278
MmeI TCCRAC 3 cut(s) 216, 1015, 1103
Mox20I TGGCCA 1 cut(s) 585
MscI TGGCCA 1 cut(s) 585
MseI TTAA 2 cut(s) 242, 1059
MslI CAYNNNNRTG 6 cut(s) 263, 789, 792, 795, 880, 1208
Msp20I TGGCCA 1 cut(s) 585
MspA1I CMGCKG 1 cut(s) 968
MspR9I CCNGG 1 cut(s) 587
MvaI CCWGG 1 cut(s) 587
MvnI CGCG 2 cut(s) 424, 753
NcoI CCATGG 1 cut(s) 183
NlaIV GGNNCC 4 cut(s) 518, 536, 597, 766
NmuCI GTSAC 3 cut(s) 311, 1110, 1210
NspI RCATGY 1 cut(s) 451
OliI CACNNNNGTG 1 cut(s) 880
PagI TCATGA 1 cut(s) 643
PceI AGGCCT 1 cut(s) 993
PcsI WCGNNNNNNNCGW 2 cut(s) 288, 750
PfeI GAWTC 3 cut(s) 409, 433, 1038
Pfl23II CGTACG 1 cut(s) 425
PflMI CCANNNNNTGG 1 cut(s) 592
PkrI GCNGC 5 cut(s) 161, 567, 700, 967, 1069
PleI GAGTC 1 cut(s) 277
PpsI GAGTC 1 cut(s) 277
PshBI ATTAAT 1 cut(s) 242
Psp6I CCWGG 1 cut(s) 585
PspEI GGTNACC 1 cut(s) 311
PspFI CCCAGC 1 cut(s) 842
PspGI CCWGG 1 cut(s) 585
PspLI CGTACG 1 cut(s) 425
PspN4I GGNNCC 4 cut(s) 518, 536, 597, 766
PspOMI GGGCCC 1 cut(s) 534
PspPI GGNCC 3 cut(s) 534, 535, 1143
PsuI RGATCY 3 cut(s) 6, 542, 1131
PvuII CAGCTG 1 cut(s) 968
RsaI GTAC 4 cut(s) 427, 527, 665, 766
RsaNI GTAC 4 cut(s) 426, 526, 664, 765
RseI CAYNNNNRTG 6 cut(s) 263, 789, 792, 795, 880, 1208
SalI GTCGAC 1 cut(s) 278
SaqAI TTAA 2 cut(s) 242, 1059
SatI GCNGC 5 cut(s) 160, 566, 699, 966, 1068
Sau96I GGNCC 3 cut(s) 534, 535, 1143
ScaI AGTACT 1 cut(s) 527
SchI GAGTC 1 cut(s) 278
ScrFI CCNGG 1 cut(s) 587
SduI GDGCHC 1 cut(s) 538
SfaNI GCATC 3 cut(s) 787, 805, 1083
SfcI CTRYAG 1 cut(s) 655
SinI GGWCC 1 cut(s) 1143
SmiMI CAYNNNNRTG 6 cut(s) 263, 789, 792, 795, 880, 1208
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
Sse9I AATT 1 cut(s) 98
SseBI AGGCCT 1 cut(s) 993
SsiI CCGC 3 cut(s) 22, 599, 751
SspI AATATT 2 cut(s) 80, 810
StuI AGGCCT 1 cut(s) 993
StyD4I CCNGG 1 cut(s) 585
StyI CCWWGG 2 cut(s) 183, 452
TaaI ACNGT 4 cut(s) 317, 489, 656, 879
TaiI ACGT 1 cut(s) 285
TaqI TCGA 2 cut(s) 279, 1003
TasI AATT 1 cut(s) 98
TatI WGTACW 1 cut(s) 525
TfiI GAWTC 3 cut(s) 409, 433, 1038
Tru1I TTAA 2 cut(s) 242, 1059
Tru9I TTAA 2 cut(s) 242, 1059
TscAI CASTG 2 cut(s) 775, 1201
TseFI GTSAC 3 cut(s) 311, 1110, 1210
TseI GCWGC 5 cut(s) 159, 565, 698, 965, 1067
Tsp45I GTSAC 3 cut(s) 311, 1110, 1210
TspGWI ACGGA 3 cut(s) 402, 443, 515
TspRI CASTG 2 cut(s) 775, 1201
Van91I CCANNNNNTGG 1 cut(s) 592
VpaK11BI GGWCC 1 cut(s) 1143
VspI ATTAAT 1 cut(s) 242
XceI RCATGY 1 cut(s) 451
XcmI CCANNNNNNNNNTGG 2 cut(s) 181, 545
XmiI GTMKAC 1 cut(s) 279
ZrmI AGTACT 1 cut(s) 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.