RchiOBHm_Chr7g0240121

protein dimerization activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002468
Physical Location & Seq
Forward (+)
66000029 .. 66000751
723 bp
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UTR
Exon/CDS
Intron
PRQ21523

Sequence Viewer

Length: 723 bp
ATGTTGGCCGATCTCTTATCCCCAACCATGATCCCGGGACTCATGTCCGGGGACTACATTGGGATGGAGAGCTGCGTTGACGTCCTCAGGGATGAAGACGAATCACACTGCGATTACAAACAACAAAACTGCTACAACCAAAAGGTGCAAGACAAGAGAGAGGAGAAGAGACTGGCGATGATGAAGAGGATGGAGCTTCCTCCTCCGATTCCGATGCTGGCGCGCACGGAGAATCTCCCCTCCCACATGCCATGGGTTTTGAAGAGGCATTACACGACCGATGGAAGGTTGATTTTGACAGAGGAGAAGGTCAGGCATCATGAGTATTTTAGGGCGCACAGATCCAACGGCAGACTGACCTTGCAGCTCGTTCCTCTTGATGACGAGTTGTTGGCCTCGCCTTTCATGGCCAATCAGAAGGACAATATGGATGAGGCAAATGCTCATGATGATGACGACAGCGAAGAAAATGAAGAGGATGATTATGATAGGTATGATGATGGATGTAGTGAGGATGAGGATGAGGAAGAGGAAGAGGAAGAGAAAGAGAAAGAGGAGGAGGAGGATGAACAAGATGATGGGGTTGATGATTTGCAGCACCATGATGGTGTGCCTGAAGAGCCAATTTCGACAGGAAAGTGTTTCAATTTCAACAGTGTGGGAACAGGTTCCCGGTGTATTTTCGGGGTGCCAGTGCCAGCGATCAGGCAAGTTCATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413

Protein Analysis

240

Amino Acids

27.73

Weight (kDa)

4.38

Isoelectric Point (pI)

71.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 65 - 123 4.7e-20 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 84
AccB1I GGYRCC 1 cut(s) 688
AccII CGCG 1 cut(s) 223
AclWI GGATC 2 cut(s) 25, 336
AcoI YGGCCR 2 cut(s) 6, 408
AcuI CTGAAG 1 cut(s) 636
AcyI GRCGYC 1 cut(s) 81
AfiI CCNNNNNNNGG 1 cut(s) 285
AgsI TTSAA 3 cut(s) 262, 646, 652
AluBI AGCT 3 cut(s) 72, 196, 367
AluI AGCT 3 cut(s) 72, 196, 367
Alw26I GTCTC 1 cut(s) 163
AlwI GGATC 2 cut(s) 25, 336
Ama87I CYCGRG 1 cut(s) 34
AoxI GGCC 3 cut(s) 6, 393, 408
ApeKI GCWGC 3 cut(s) 72, 364, 595
Asp700I GAANNNNTTC 1 cut(s) 667
AspLEI GCGC 3 cut(s) 223, 225, 337
AsuC2I CCSGG 4 cut(s) 35, 36, 49, 673
AvaI CYCGRG 1 cut(s) 34
AxyI CCTNAGG 1 cut(s) 86
BalI TGGCCA 1 cut(s) 410
BanI GGYRCC 1 cut(s) 688
BarI GAAGNNNNNNTAC 2 cut(s) 254, 286
BbsI GAAGAC 1 cut(s) 102
BbvI GCAGC 3 cut(s) 59, 376, 607
BccI CCATC 6 cut(s) 58, 184, 275, 494, 572, 599
BceAI ACGGC 1 cut(s) 364
BcgI CGANNNNNNTGC 2 cut(s) 196, 230
BcnI CCSGG 4 cut(s) 35, 36, 49, 673
BcoDI GTCTC 1 cut(s) 163
BisI GCNGC 3 cut(s) 73, 365, 596
BlsI GCNGC 3 cut(s) 74, 366, 597
Bme1390I CCNGG 4 cut(s) 35, 36, 49, 673
BmeT110I CYCGRG 1 cut(s) 34
BmiI GGNNCC 2 cut(s) 670, 690
BmrFI CCNGG 4 cut(s) 35, 36, 49, 673
BmsI GCATC 2 cut(s) 204, 325
BoxI GACNNNNGTC 1 cut(s) 43
BpiI GAAGAC 1 cut(s) 102
BpuMI CCSGG 4 cut(s) 35, 36, 49, 673
BsaHI GRCGYC 1 cut(s) 81
BsaJI CCNNGG 3 cut(s) 34, 48, 251
Bsc4I CCNNNNNNNGG 1 cut(s) 285
Bse1I ACTGG 2 cut(s) 177, 692
Bse21I CCTNAGG 1 cut(s) 86
BseDI CCNNGG 3 cut(s) 34, 48, 251
BseGI GGATG 9 cut(s) 69, 97, 195, 436, 484, 509, 520, 526, 571
BseLI CCNNNNNNNGG 1 cut(s) 285
BseMII CTCAG 1 cut(s) 100
BseNI ACTGG 2 cut(s) 177, 692
BsePI GCGCGC 1 cut(s) 221
BseRI GAGGAG 6 cut(s) 176, 192, 317, 569, 572, 575
BseXI GCAGC 3 cut(s) 59, 376, 607
Bsh1236I CGCG 1 cut(s) 223
Bsh1285I CGRYCG 1 cut(s) 279
BshFI GGCC 3 cut(s) 8, 395, 410
BshNI GGYRCC 1 cut(s) 688
BsiEI CGRYCG 1 cut(s) 279
BsiHKCI CYCGRG 1 cut(s) 34
BsiSI CCGG 3 cut(s) 35, 48, 673
BslFI GGGAC 2 cut(s) 51, 65
BslI CCNNNNNNNGG 1 cut(s) 285
BsmAI GTCTC 1 cut(s) 163
BsmFI GGGAC 2 cut(s) 51, 65
BsnI GGCC 3 cut(s) 8, 395, 410
BsoBI CYCGRG 1 cut(s) 34
Bsp143I GATC 4 cut(s) 10, 30, 341, 702
Bsp19I CCATGG 1 cut(s) 251
BspANI GGCC 3 cut(s) 8, 395, 410
BspCNI CTCAG 1 cut(s) 99
BspFNI CGCG 1 cut(s) 223
BspHI TCATGA 2 cut(s) 319, 445
BspLI GGNNCC 2 cut(s) 670, 690
BspPI GGATC 2 cut(s) 25, 336
BspQI GCTCTTC 1 cut(s) 612
BspT107I GGYRCC 1 cut(s) 688
BsrI ACTGG 2 cut(s) 177, 692
BssECI CCNNGG 3 cut(s) 34, 48, 251
BssHII GCGCGC 1 cut(s) 221
BssMI GATC 4 cut(s) 10, 30, 341, 702
BssNI GRCGYC 1 cut(s) 81
BssT1I CCWWGG 1 cut(s) 251
Bst4CI ACNGT 1 cut(s) 656
Bst6I CTCTTC 8 cut(s) 161, 179, 257, 468, 522, 528, 534, 612
BstACI GRCGYC 1 cut(s) 81
BstC8I GCNNGC 3 cut(s) 219, 223, 699
BstDEI CTNAG 1 cut(s) 86
BstDSI CCRYGG 1 cut(s) 251
BstF5I GGATG 9 cut(s) 69, 97, 195, 436, 484, 509, 520, 526, 571
BstFNI CGCG 1 cut(s) 223
BstHHI GCGC 3 cut(s) 223, 225, 337
BstKTI GATC 4 cut(s) 13, 33, 344, 705
BstMAI GTCTC 1 cut(s) 163
BstMBI GATC 4 cut(s) 10, 30, 341, 702
BstMCI CGRYCG 1 cut(s) 279
BstMWI GCNNNNNNNGC 1 cut(s) 619
BstNSI RCATGY 1 cut(s) 250
BstPAI GACNNNNGTC 1 cut(s) 43
BstSCI CCNGG 4 cut(s) 33, 34, 47, 671
BstUI CGCG 1 cut(s) 223
BstV1I GCAGC 3 cut(s) 59, 376, 607
BstV2I GAAGAC 1 cut(s) 102
BstX2I RGATCY 1 cut(s) 341
BstYI RGATCY 1 cut(s) 341
Bsu36I CCTNAGG 1 cut(s) 86
BsuRI GGCC 3 cut(s) 8, 395, 410
BtgI CCRYGG 1 cut(s) 251
BtgZI GCGATG 1 cut(s) 191
BtsCI GGATG 9 cut(s) 69, 97, 195, 436, 484, 509, 520, 526, 571
BtsI GCAGTG 1 cut(s) 106
BtsIMutI CAGTG 3 cut(s) 106, 661, 699
Cac8I GCNNGC 3 cut(s) 219, 223, 699
CciI TCATGA 2 cut(s) 319, 445
CfoI GCGC 3 cut(s) 223, 225, 337
Cfr9I CCCGGG 1 cut(s) 34
CviAII CATG 9 cut(s) 28, 43, 247, 252, 320, 406, 446, 602, 716
CviJI RGCY 7 cut(s) 8, 72, 196, 367, 395, 410, 622
CviKI_1 RGCY 7 cut(s) 8, 72, 196, 367, 395, 410, 622
DdeI CTNAG 1 cut(s) 86
DpnI GATC 4 cut(s) 12, 32, 343, 704
DpnII GATC 4 cut(s) 10, 30, 341, 702
EaeI YGGCCR 2 cut(s) 6, 408
Eam1104I CTCTTC 8 cut(s) 161, 179, 257, 468, 522, 528, 534, 612
EarI CTCTTC 8 cut(s) 161, 179, 257, 468, 522, 528, 534, 612
Eco130I CCWWGG 1 cut(s) 251
Eco57I CTGAAG 1 cut(s) 636
Eco81I CCTNAGG 1 cut(s) 86
Eco88I CYCGRG 1 cut(s) 34
EcoT14I CCWWGG 1 cut(s) 251
ErhI CCWWGG 1 cut(s) 251
FaeI CATG 9 cut(s) 31, 46, 250, 255, 323, 409, 449, 605, 719
FaqI GGGAC 2 cut(s) 51, 65
FatI CATG 9 cut(s) 27, 42, 246, 251, 319, 405, 445, 601, 715
Fnu4HI GCNGC 3 cut(s) 73, 365, 596
FokI GGATG 9 cut(s) 76, 104, 202, 443, 491, 516, 527, 533, 578
Fsp4HI GCNGC 3 cut(s) 73, 365, 596
GlaI GCGC 3 cut(s) 222, 224, 336
GluI GCNGC 3 cut(s) 73, 365, 596
HaeIII GGCC 3 cut(s) 8, 395, 410
HapII CCGG 3 cut(s) 35, 48, 673
HhaI GCGC 3 cut(s) 223, 225, 337
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 9 cut(s) 31, 46, 250, 255, 323, 409, 449, 605, 719
Hin6I GCGC 3 cut(s) 221, 223, 335
HinP1I GCGC 3 cut(s) 221, 223, 335
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HinfI GANTC 4 cut(s) 39, 101, 208, 232
HpaII CCGG 3 cut(s) 35, 48, 673
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 3 cut(s) 207, 213, 417
Hpy188III TCNNGA 3 cut(s) 320, 377, 446
Hpy8I GTNNAC 1 cut(s) 79
HpyAV CCTTC 3 cut(s) 279, 301, 412
HpyCH4III ACNGT 1 cut(s) 656
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 3 cut(s) 148, 364, 595
HpyF10VI GCNNNNNNNGC 1 cut(s) 619
HpyF3I CTNAG 1 cut(s) 86
HpySE526I ACGT 1 cut(s) 81
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 9 cut(s) 31, 46, 250, 255, 323, 409, 449, 605, 719
HspAI GCGC 3 cut(s) 221, 223, 335
Kzo9I GATC 4 cut(s) 10, 30, 341, 702
LguI GCTCTTC 1 cut(s) 612
LmnI GCTCC 1 cut(s) 193
Lsp1109I GCAGC 3 cut(s) 59, 376, 607
LweI GCATC 2 cut(s) 204, 325
MaeII ACGT 1 cut(s) 81
MalI GATC 4 cut(s) 12, 32, 343, 704
MboI GATC 4 cut(s) 10, 30, 341, 702
MflI RGATCY 1 cut(s) 341
MlsI TGGCCA 1 cut(s) 410
MluCI AATT 2 cut(s) 624, 646
MluNI TGGCCA 1 cut(s) 410
MlyI GAGTC 1 cut(s) 33
MmeI TCCRAC 1 cut(s) 369
Mox20I TGGCCA 1 cut(s) 410
MroXI GAANNNNTTC 1 cut(s) 667
MscI TGGCCA 1 cut(s) 410
MslI CAYNNNNRTG 4 cut(s) 62, 450, 603, 606
Msp20I TGGCCA 1 cut(s) 410
MspI CCGG 3 cut(s) 35, 48, 673
MspR9I CCNGG 4 cut(s) 35, 36, 49, 673
MvnI CGCG 1 cut(s) 223
MwoI GCNNNNNNNGC 1 cut(s) 619
NciI CCSGG 4 cut(s) 35, 36, 49, 673
NcoI CCATGG 1 cut(s) 251
NdeII GATC 4 cut(s) 10, 30, 341, 702
NlaIII CATG 9 cut(s) 31, 46, 250, 255, 323, 409, 449, 605, 719
NlaIV GGNNCC 2 cut(s) 670, 690
NspI RCATGY 1 cut(s) 250
PagI TCATGA 2 cut(s) 319, 445
PauI GCGCGC 1 cut(s) 221
PciSI GCTCTTC 1 cut(s) 612
PdmI GAANNNNTTC 1 cut(s) 667
PfeI GAWTC 3 cut(s) 101, 208, 232
PkrI GCNGC 3 cut(s) 74, 366, 597
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
PshAI GACNNNNGTC 1 cut(s) 43
PspN4I GGNNCC 2 cut(s) 670, 690
PsuI RGATCY 1 cut(s) 341
PteI GCGCGC 1 cut(s) 221
RseI CAYNNNNRTG 4 cut(s) 62, 450, 603, 606
SapI GCTCTTC 1 cut(s) 612
SatI GCNGC 3 cut(s) 73, 365, 596
Sau3AI GATC 4 cut(s) 10, 30, 341, 702
SchI GAGTC 1 cut(s) 33
ScrFI CCNGG 4 cut(s) 35, 36, 49, 673
SfaNI GCATC 2 cut(s) 204, 325
SmaI CCCGGG 1 cut(s) 36
SmiMI CAYNNNNRTG 4 cut(s) 62, 450, 603, 606
Sse9I AATT 2 cut(s) 624, 646
StyD4I CCNGG 4 cut(s) 33, 34, 47, 671
StyI CCWWGG 1 cut(s) 251
TaaI ACNGT 1 cut(s) 656
TaiI ACGT 1 cut(s) 84
TaqI TCGA 1 cut(s) 629
TaqII GACCGA 1 cut(s) 293
TasI AATT 2 cut(s) 624, 646
TfiI GAWTC 3 cut(s) 101, 208, 232
TscAI CASTG 3 cut(s) 113, 661, 699
TseI GCWGC 3 cut(s) 72, 364, 595
TspDTI ATGAA 6 cut(s) 108, 197, 394, 486, 582, 704
TspGWI ACGGA 1 cut(s) 242
TspMI CCCGGG 1 cut(s) 34
TspRI CASTG 3 cut(s) 113, 661, 699
XceI RCATGY 1 cut(s) 250
XmaI CCCGGG 1 cut(s) 34
XmnI GAANNNNTTC 1 cut(s) 667
ZraI GACGTC 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.