Rroxscaffold_3G00220390

Fantastic Four meristem regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0002468
Physical Location & Seq
Reverse (-)
2609311 .. 2614799
5489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00220390.1

Sequence Viewer

Length: 1032 bp
ATGAAACGGTGCAGTGAAAGCAGACAAAGTATAGCTGTTAAGAGGTCAAATCACACCATGGATCTCACGAGTGGAAGGTCATTTATCTGCACTGTTTATGAATCCATAATTTCCTCTCTCTGTTTGTTGTGGGGTTCGAGGTCAACATGTCCCATGCAAACCCCAAAAGATTCGACGCATCAAAATCTCAAGTCGGGTCTCAAAACCCTAATTTTCAACCCTAAATCCCATAATCATGGCCACATCGTTCACAAGCACTACAAGCTCGCACCACCATCGCCATCTTCGCAGTCTTCACTCACTTATTCGTGGTCGTTATTGGATAACTCATCGTCGTGGACTTCGTCGATGATGGACGACTTGCTCGGAACAGACAGTGGCGTCGCCTACTTGACAACCTCTAACGACGATATGTTAATGTCAATGACGACCAGTACTACTCGCAGTTACCCCAAGAAGAAAAGTACTCGAGGAAGCAAAAGGATGAAAAGGGAATTTCCACCACCAATACCGCTTCTGGCACAAACGAGGAATTTGCAATGTCGCATGCCTTGGAATCTGACTAGGCATTACTCTAATGGAAGGCTAGTTCTGAAAGGAGAGAAAGCACAGCACCATGAGTACTTCGAAGCCGAACGTGGCAGCGACCGCCTTGTGTTGAAGCTCGTGCCACTGGACAACACCATACTAACGACTTATGATGTGCCTGAATCGTCTGGTGGACATTTGGACGTGTGTGAGGAAAACGATGAAGAGCTTGAAATGGAAAACGTGCAGTTTGCTCAAGAAGACTATCCTGAGGATGATAATGATGATGATGATGATGAATGTGATGACAATGTGGATGAGAGTAAAACCATGTTGGTTTGCAAGTCGGTGCCTCAGTCACACTCGGAGATCAGGTGTGTTGAGAAATATGGAAATCTGCCGATGTATTTCACAAAGTCAGCTGCAAGTGTCCATGAACAACCGCAAAACTACTTTGCACACCCTGCTTCAGCTCCTCTTCGTCCAGTGACTGCTGTCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

343

Amino Acids

38.75

Weight (kDa)

5.96

Isoelectric Point (pI)

59.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 165 - 222 8.2e-13 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 380
AccB1I GGYRCC 1 cut(s) 877
AciI CCGC 3 cut(s) 512, 649, 971
AclWI GGATC 1 cut(s) 69
AcoI YGGCCR 1 cut(s) 238
AcsI RAATTY 2 cut(s) 494, 532
AcuI CTGAAG 1 cut(s) 981
AcyI GRCGYC 1 cut(s) 381
AfaI GTAC 3 cut(s) 436, 466, 623
AflIII ACRYGT 2 cut(s) 146, 732
AgsI TTSAA 3 cut(s) 217, 661, 761
AjiI CACGTC 1 cut(s) 733
AloI GAACNNNNNNTCC 2 cut(s) 573, 605
AluBI AGCT 6 cut(s) 35, 265, 664, 757, 950, 1001
AluI AGCT 6 cut(s) 35, 265, 664, 757, 950, 1001
Alw26I GTCTC 1 cut(s) 203
AlwI GGATC 1 cut(s) 69
AlwNI CAGNNNCTG 1 cut(s) 1019
Ama87I CYCGRG 1 cut(s) 468
AoxI GGCC 1 cut(s) 238
ApeKI GCWGC 2 cut(s) 642, 950
ApoI RAATTY 2 cut(s) 494, 532
AsuII TTCGAA 1 cut(s) 627
AvaI CYCGRG 1 cut(s) 468
AxyI CCTNAGG 1 cut(s) 798
BalI TGGCCA 1 cut(s) 240
BanI GGYRCC 1 cut(s) 877
BauI CACGAG 2 cut(s) 67, 665
BbsI GAAGAC 2 cut(s) 285, 795
BbvI GCAGC 2 cut(s) 654, 937
BccI CCATC 3 cut(s) 283, 289, 346
BcgI CGANNNNNNTGC 4 cut(s) 258, 292, 517, 551
BcoDI GTCTC 1 cut(s) 203
BfaI CTAG 2 cut(s) 564, 587
BisI GCNGC 2 cut(s) 643, 951
BlsI GCNGC 2 cut(s) 644, 952
BmcAI AGTACT 3 cut(s) 436, 466, 623
BmeT110I CYCGRG 1 cut(s) 468
BmgBI CACGTC 1 cut(s) 733
BmiI GGNNCC 1 cut(s) 879
BmsI GCATC 1 cut(s) 187
BoxI GACNNNNGTC 1 cut(s) 1022
BpiI GAAGAC 2 cut(s) 285, 795
Bpu14I TTCGAA 1 cut(s) 627
BpuEI CTTGAG 2 cut(s) 173, 768
BsaHI GRCGYC 1 cut(s) 381
BsaI GGTCTC 1 cut(s) 203
BsaJI CCNNGG 2 cut(s) 57, 551
BsaXI ACNNNNNCTCC 2 cut(s) 887, 917
Bse1I ACTGG 3 cut(s) 432, 678, 1013
Bse21I CCTNAGG 1 cut(s) 798
Bse3DI GCAATG 1 cut(s) 545
BseDI CCNNGG 2 cut(s) 57, 551
BseGI GGATG 3 cut(s) 489, 808, 850
BseMI GCAATG 1 cut(s) 545
BseMII CTCAG 2 cut(s) 789, 896
BseNI ACTGG 3 cut(s) 432, 678, 1013
BseRI GAGGAG 1 cut(s) 993
BseXI GCAGC 2 cut(s) 654, 937
BsgI GTGCAG 3 cut(s) 31, 73, 794
Bsh1285I CGRYCG 1 cut(s) 649
BshFI GGCC 1 cut(s) 240
BshNI GGYRCC 1 cut(s) 877
BsiEI CGRYCG 1 cut(s) 649
BsiHKCI CYCGRG 1 cut(s) 468
BslFI GGGAC 1 cut(s) 135
BsmAI GTCTC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 135
BsnI GGCC 1 cut(s) 240
Bso31I GGTCTC 1 cut(s) 203
BsoBI CYCGRG 1 cut(s) 468
Bsp119I TTCGAA 1 cut(s) 627
Bsp143I GATC 2 cut(s) 61, 897
Bsp19I CCATGG 1 cut(s) 57
BspACI CCGC 3 cut(s) 512, 649, 971
BspANI GGCC 1 cut(s) 240
BspCNI CTCAG 2 cut(s) 790, 895
BspLI GGNNCC 1 cut(s) 879
BspPI GGATC 1 cut(s) 69
BspQI GCTCTTC 1 cut(s) 747
BspT104I TTCGAA 1 cut(s) 627
BspT107I GGYRCC 1 cut(s) 877
BspTNI GGTCTC 1 cut(s) 203
BsrDI GCAATG 1 cut(s) 545
BsrI ACTGG 3 cut(s) 432, 678, 1013
BssECI CCNNGG 2 cut(s) 57, 551
BssMI GATC 2 cut(s) 61, 897
BssNI GRCGYC 1 cut(s) 381
BssSI CACGAG 2 cut(s) 67, 665
BssT1I CCWWGG 2 cut(s) 57, 551
Bst2BI CACGAG 2 cut(s) 67, 665
Bst4CI ACNGT 3 cut(s) 9, 94, 377
Bst6I CTCTTC 2 cut(s) 747, 1011
BstACI GRCGYC 1 cut(s) 381
BstAPI GCANNNNNTGC 1 cut(s) 992
BstBI TTCGAA 1 cut(s) 627
BstC8I GCNNGC 2 cut(s) 267, 548
BstDEI CTNAG 2 cut(s) 798, 882
BstDSI CCRYGG 1 cut(s) 57
BstF5I GGATG 3 cut(s) 489, 808, 850
BstKTI GATC 2 cut(s) 64, 900
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 2 cut(s) 61, 897
BstMCI CGRYCG 1 cut(s) 649
BstMWI GCNNNNNNNGC 5 cut(s) 18, 262, 286, 648, 992
BstNSI RCATGY 2 cut(s) 150, 550
BstPAI GACNNNNGTC 1 cut(s) 1022
BstV1I GCAGC 2 cut(s) 654, 937
BstV2I GAAGAC 2 cut(s) 285, 795
BstX2I RGATCY 1 cut(s) 61
BstXI CCANNNNNNTGG 1 cut(s) 236
BstYI RGATCY 1 cut(s) 61
Bsu36I CCTNAGG 1 cut(s) 798
BsuRI GGCC 1 cut(s) 240
BtgI CCRYGG 1 cut(s) 57
BtgZI GCGATG 1 cut(s) 261
BtrI CACGTC 1 cut(s) 733
BtsCI GGATG 3 cut(s) 489, 808, 850
BtsI GCAGTG 1 cut(s) 19
BtsIMutI CAGTG 5 cut(s) 19, 90, 382, 671, 1020
Cac8I GCNNGC 2 cut(s) 267, 548
CaiI CAGNNNCTG 1 cut(s) 1019
CseI GACGC 2 cut(s) 184, 370
Csp6I GTAC 3 cut(s) 435, 465, 622
CviAII CATG 8 cut(s) 58, 147, 154, 236, 547, 617, 859, 962
CviJI RGCY 9 cut(s) 35, 240, 265, 586, 632, 664, 757, 950, 1001
CviKI_1 RGCY 9 cut(s) 35, 240, 265, 586, 632, 664, 757, 950, 1001
CviQI GTAC 3 cut(s) 435, 465, 622
DdeI CTNAG 2 cut(s) 798, 882
DpnI GATC 2 cut(s) 63, 899
DpnII GATC 2 cut(s) 61, 897
DrdI GACNNNNNNGTC 1 cut(s) 380
DseDI GACNNNNNNGTC 1 cut(s) 380
EaeI YGGCCR 1 cut(s) 238
Eam1104I CTCTTC 2 cut(s) 747, 1011
EarI CTCTTC 2 cut(s) 747, 1011
Eco130I CCWWGG 2 cut(s) 57, 551
Eco31I GGTCTC 1 cut(s) 203
Eco57I CTGAAG 1 cut(s) 981
Eco81I CCTNAGG 1 cut(s) 798
Eco88I CYCGRG 1 cut(s) 468
EcoT14I CCWWGG 2 cut(s) 57, 551
ErhI CCWWGG 2 cut(s) 57, 551
FaeI CATG 8 cut(s) 61, 150, 157, 239, 550, 620, 862, 965
FaqI GGGAC 1 cut(s) 135
FatI CATG 8 cut(s) 57, 146, 153, 235, 546, 616, 858, 961
Fnu4HI GCNGC 2 cut(s) 643, 951
FokI GGATG 3 cut(s) 496, 815, 857
Fsp4HI GCNGC 2 cut(s) 643, 951
FspBI CTAG 2 cut(s) 564, 587
GluI GCNGC 2 cut(s) 643, 951
HaeIII GGCC 1 cut(s) 240
HgaI GACGC 2 cut(s) 184, 370
Hin1I GRCGYC 1 cut(s) 381
Hin1II CATG 8 cut(s) 61, 150, 157, 239, 550, 620, 862, 965
HincII GTYRAC 1 cut(s) 144
HindII GTYRAC 1 cut(s) 144
HinfI GANTC 4 cut(s) 101, 170, 556, 710
Hpy166II GTNNAC 4 cut(s) 144, 250, 339, 722
Hpy188I TCNGA 4 cut(s) 368, 561, 594, 895
Hpy188III TCNNGA 3 cut(s) 67, 785, 797
Hpy8I GTNNAC 4 cut(s) 144, 250, 339, 722
Hpy99I CGWCG 5 cut(s) 178, 337, 349, 386, 410
HpyAV CCTTC 2 cut(s) 69, 576
HpyCH4III ACNGT 3 cut(s) 9, 94, 377
HpyCH4IV ACGT 3 cut(s) 637, 732, 771
HpyCH4V TGCA 8 cut(s) 12, 90, 157, 538, 775, 870, 953, 986
HpyF10VI GCNNNNNNNGC 5 cut(s) 18, 262, 286, 648, 992
HpyF3I CTNAG 2 cut(s) 798, 882
HpySE526I ACGT 3 cut(s) 637, 732, 771
Hsp92I GRCGYC 1 cut(s) 381
Hsp92II CATG 8 cut(s) 61, 150, 157, 239, 550, 620, 862, 965
Kzo9I GATC 2 cut(s) 61, 897
LguI GCTCTTC 1 cut(s) 747
LmnI GCTCC 1 cut(s) 1006
LpnPI CCDG 9 cut(s) 445, 503, 659, 702, 720, 810, 886, 1005, 1026
Lsp1109I GCAGC 2 cut(s) 654, 937
LweI GCATC 1 cut(s) 187
MaeI CTAG 2 cut(s) 564, 587
MaeII ACGT 3 cut(s) 637, 732, 771
MaeIII GTNAC 3 cut(s) 446, 885, 1015
MalI GATC 2 cut(s) 63, 899
MboI GATC 2 cut(s) 61, 897
MboII GAAGA 6 cut(s) 276, 285, 469, 764, 800, 998
MflI RGATCY 1 cut(s) 61
MlsI TGGCCA 1 cut(s) 240
MluCI AATT 4 cut(s) 108, 210, 494, 532
MluNI TGGCCA 1 cut(s) 240
Mox20I TGGCCA 1 cut(s) 240
MscI TGGCCA 1 cut(s) 240
MseI TTAA 2 cut(s) 39, 416
MslI CAYNNNNRTG 2 cut(s) 234, 334
Msp20I TGGCCA 1 cut(s) 240
MspA1I CMGCKG 1 cut(s) 950
MwoI GCNNNNNNNGC 5 cut(s) 18, 262, 286, 648, 992
NcoI CCATGG 1 cut(s) 57
NdeII GATC 2 cut(s) 61, 897
NlaIII CATG 8 cut(s) 61, 150, 157, 239, 550, 620, 862, 965
NlaIV GGNNCC 1 cut(s) 879
NmuCI GTSAC 2 cut(s) 885, 1015
NspI RCATGY 2 cut(s) 150, 550
NspV TTCGAA 1 cut(s) 627
PaeI GCATGC 1 cut(s) 550
PaeR7I CTCGAG 1 cut(s) 468
PciI ACATGT 1 cut(s) 146
PciSI GCTCTTC 1 cut(s) 747
PcsI WCGNNNNNNNCGW 1 cut(s) 341
PfeI GAWTC 4 cut(s) 101, 170, 556, 710
PflFI GACNNNGTC 1 cut(s) 343
PkrI GCNGC 2 cut(s) 644, 952
PscI ACATGT 1 cut(s) 146
PshAI GACNNNNGTC 1 cut(s) 1022
PspN4I GGNNCC 1 cut(s) 879
PspXI VCTCGAGB 1 cut(s) 468
PstNI CAGNNNCTG 1 cut(s) 1019
PsuI RGATCY 1 cut(s) 61
PsyI GACNNNGTC 1 cut(s) 343
PvuII CAGCTG 1 cut(s) 950
RsaI GTAC 3 cut(s) 436, 466, 623
RsaNI GTAC 3 cut(s) 435, 465, 622
RseI CAYNNNNRTG 2 cut(s) 234, 334
SapI GCTCTTC 1 cut(s) 747
SaqAI TTAA 2 cut(s) 39, 416
SatI GCNGC 2 cut(s) 643, 951
Sau3AI GATC 2 cut(s) 61, 897
ScaI AGTACT 3 cut(s) 436, 466, 623
SfaNI GCATC 1 cut(s) 187
Sfr274I CTCGAG 1 cut(s) 468
SfuI TTCGAA 1 cut(s) 627
SlaI CTCGAG 1 cut(s) 468
SmiMI CAYNNNNRTG 2 cut(s) 234, 334
SmlI CTYRAG 3 cut(s) 188, 468, 783
SmoI CTYRAG 3 cut(s) 188, 468, 783
SphI GCATGC 1 cut(s) 550
Sse9I AATT 4 cut(s) 108, 210, 494, 532
SsiI CCGC 3 cut(s) 512, 649, 971
SspMI CTAG 2 cut(s) 564, 587
StyI CCWWGG 2 cut(s) 57, 551
TaaI ACNGT 3 cut(s) 9, 94, 377
TaiI ACGT 3 cut(s) 640, 735, 774
TaqI TCGA 5 cut(s) 137, 173, 347, 469, 627
TasI AATT 4 cut(s) 108, 210, 494, 532
TatI WGTACW 3 cut(s) 434, 464, 621
TfiI GAWTC 4 cut(s) 101, 170, 556, 710
Tru1I TTAA 2 cut(s) 39, 416
Tru9I TTAA 2 cut(s) 39, 416
TscAI CASTG 5 cut(s) 19, 97, 382, 678, 1020
TseFI GTSAC 2 cut(s) 885, 1015
TseI GCWGC 2 cut(s) 642, 950
Tsp45I GTSAC 2 cut(s) 885, 1015
TspDTI ATGAA 6 cut(s) 17, 114, 500, 765, 840, 978
TspRI CASTG 5 cut(s) 19, 97, 382, 678, 1020
Tth111I GACNNNGTC 1 cut(s) 343
XapI RAATTY 2 cut(s) 494, 532
XceI RCATGY 2 cut(s) 150, 550
XhoI CTCGAG 1 cut(s) 468
XspI CTAG 2 cut(s) 564, 587
ZrmI AGTACT 3 cut(s) 436, 466, 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.