AT1G22110

Fantastic Four meristem regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002468
Physical Location & Seq
Reverse (-)
7800507 .. 7804061
3555 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G22110.1

Sequence Viewer

Length: 849 bp
ATGGAGAGAGCCTCTTCTTCCTCTGACTCATCATCATCCATGGCTTCTTCTTCTGATCAGTCTCTTTCCATCAACTCCGATCAAACCTCACCTTTTGTGACGTCATCCATGCTTTCACGCACGTCATCTTCTTCTTCCTCCGCCGTGGGAGACTACATCGGGACAGAGAGCTGCTTCGACATCCTCTCCGCTGACGAAGGGAACGATGTTGTCTCCGTTGCGTCGGAGCCTGTAAAAAGCCGGTTTCGTTACGGTGGAAGGAGGAGAGAGGAGAGAGAAGCTAGAGCTGCGGCGGCGCGTGAGTTTCCTCCTCCGATACCGTTGCTTGCTCAGACGGGGAATCTTCTCCCGCACATGCCGTGGGTTCTCAAGCGTGTGGTGACCAGCGACGGCAGGCTTATACTCAGAGAAGAGAAGGTTCGTCATCATGAGTATTTCCGTGCGAATAGATCCAATGGTCGTCTCACTCTCCACCTTGTTCCTTTAGACGATGATGTTTTTGATCTTCCTCAAGAACCCTCTCATTACCAAAGTGATGATGAAGAGGATGATGATGAATGTGATGATGAGGATGAGTGCGATGATGATGATCAGCAAGAGGTGGAAGATGATTTGGATGATCTGGCGGATAAGATTAATAAGGATGTTACTATTAATGATGATGATAAGGGCAATGTGCATGGTGATAGTGATGATGGATATAGGAAGGTTATATTAGCGGCGGTGGGGGAGGAGACGGTGGTGGAGAGTGGAATGATGGTCGGAGGAGGAGGATCGCCGAGAGGAAAGTGTTTGAAGTCATGTTTTGTTGGTATGAGAGTTCATGAGATAAGACCAGTTCTTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

282

Amino Acids

30.99

Weight (kDa)

4.44

Isoelectric Point (pI)

63.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 101 - 159 3.9e-20 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 104
AccII CGCG 1 cut(s) 298
AciI CCGC 8 cut(s) 141, 189, 290, 293, 350, 626, 719, 722
AclWI GGATC 2 cut(s) 444, 781
AcyI GRCGYC 1 cut(s) 101
AgsI TTSAA 1 cut(s) 796
AjiI CACGTC 1 cut(s) 123
AluBI AGCT 3 cut(s) 171, 281, 287
AluI AGCT 3 cut(s) 171, 281, 287
Alw26I GTCTC 5 cut(s) 66, 144, 217, 467, 728
AlwI GGATC 2 cut(s) 444, 781
ApeKI GCWGC 2 cut(s) 171, 287
AseI ATTAAT 2 cut(s) 636, 654
AspLEI GCGC 1 cut(s) 298
AsuHPI GGTGA 3 cut(s) 81, 391, 695
BbvI GCAGC 2 cut(s) 158, 274
BccI CCATC 3 cut(s) 77, 689, 751
BceAI ACGGC 3 cut(s) 128, 343, 406
BcgI CGANNNNNNTGC 2 cut(s) 304, 338
BclI TGATCA 2 cut(s) 55, 589
BcoDI GTCTC 5 cut(s) 66, 144, 217, 467, 728
BfaI CTAG 1 cut(s) 282
BisI GCNGC 5 cut(s) 172, 288, 291, 294, 720
BlsI GCNGC 5 cut(s) 173, 289, 292, 295, 721
BmgBI CACGTC 1 cut(s) 123
BmiI GGNNCC 1 cut(s) 228
BplI GAGNNNNNCTC 1 cut(s) 28
BpuEI CTTGAG 2 cut(s) 353, 495
BsaBI GATNNNNATC 1 cut(s) 588
BsaHI GRCGYC 1 cut(s) 101
BsaJI CCNNGG 3 cut(s) 39, 144, 359
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bse118I RCCGGY 1 cut(s) 240
Bse1I ACTGG 1 cut(s) 836
Bse3DI GCAATG 1 cut(s) 679
Bse8I GATNNNNATC 1 cut(s) 588
BseDI CCNNGG 3 cut(s) 39, 144, 359
BseGI GGATG 7 cut(s) 35, 104, 180, 553, 577, 622, 649
BseJI GATNNNNATC 1 cut(s) 588
BseMI GCAATG 1 cut(s) 679
BseMII CTCAG 2 cut(s) 344, 418
BseNI ACTGG 1 cut(s) 836
BseRI GAGGAG 6 cut(s) 277, 284, 300, 746, 780, 783
BseXI GCAGC 2 cut(s) 158, 274
Bsh1236I CGCG 1 cut(s) 298
BsiSI CCGG 1 cut(s) 241
BslFI GGGAC 1 cut(s) 175
BsmAI GTCTC 5 cut(s) 66, 144, 217, 467, 728
BsmBI CGTCTC 2 cut(s) 467, 728
BsmFI GGGAC 1 cut(s) 175
Bsp143I GATC 7 cut(s) 55, 79, 449, 502, 589, 619, 773
Bsp19I CCATGG 1 cut(s) 39
BspACI CCGC 8 cut(s) 141, 189, 290, 293, 350, 626, 719, 722
BspCNI CTCAG 2 cut(s) 343, 417
BspFNI CGCG 1 cut(s) 298
BspHI TCATGA 2 cut(s) 427, 823
BspLI GGNNCC 1 cut(s) 228
BspPI GGATC 2 cut(s) 444, 781
BsrDI GCAATG 1 cut(s) 679
BsrFI RCCGGY 1 cut(s) 240
BsrI ACTGG 1 cut(s) 836
BssAI RCCGGY 1 cut(s) 240
BssECI CCNNGG 3 cut(s) 39, 144, 359
BssMI GATC 7 cut(s) 55, 79, 449, 502, 589, 619, 773
BssNI GRCGYC 1 cut(s) 101
BssT1I CCWWGG 1 cut(s) 39
Bst4CI ACNGT 3 cut(s) 254, 321, 739
Bst6I CTCTTC 3 cut(s) 19, 405, 537
BstACI GRCGYC 1 cut(s) 101
BstC8I GCNNGC 2 cut(s) 327, 395
BstDEI CTNAG 3 cut(s) 330, 404, 842
BstDSI CCRYGG 3 cut(s) 39, 144, 359
BstEII GGTNACC 1 cut(s) 379
BstF5I GGATG 7 cut(s) 35, 104, 180, 553, 577, 622, 649
BstFNI CGCG 1 cut(s) 298
BstHHI GCGC 1 cut(s) 298
BstKTI GATC 7 cut(s) 58, 82, 452, 505, 592, 622, 776
BstMAI GTCTC 5 cut(s) 66, 144, 217, 467, 728
BstMBI GATC 7 cut(s) 55, 79, 449, 502, 589, 619, 773
BstMWI GCNNNNNNNGC 2 cut(s) 287, 293
BstNSI RCATGY 1 cut(s) 358
BstPI GGTNACC 1 cut(s) 379
BstUI CGCG 1 cut(s) 298
BstV1I GCAGC 2 cut(s) 158, 274
BstX2I RGATCY 1 cut(s) 449
BstYI RGATCY 1 cut(s) 449
BtgI CCRYGG 3 cut(s) 39, 144, 359
BtgZI GCGATG 1 cut(s) 594
BtrI CACGTC 1 cut(s) 123
BtsCI GGATG 7 cut(s) 35, 104, 180, 553, 577, 622, 649
Cac8I GCNNGC 2 cut(s) 327, 395
CciI TCATGA 2 cut(s) 427, 823
CfoI GCGC 1 cut(s) 298
Cfr10I RCCGGY 1 cut(s) 240
CseI GACGC 1 cut(s) 210
CviAII CATG 7 cut(s) 40, 109, 355, 428, 680, 801, 824
CviJI RGCY 8 cut(s) 11, 44, 171, 229, 240, 281, 287, 397
CviKI_1 RGCY 8 cut(s) 11, 44, 171, 229, 240, 281, 287, 397
DdeI CTNAG 3 cut(s) 330, 404, 842
DpnI GATC 7 cut(s) 57, 81, 451, 504, 591, 621, 775
DpnII GATC 7 cut(s) 55, 79, 449, 502, 589, 619, 773
Eam1104I CTCTTC 3 cut(s) 19, 405, 537
EarI CTCTTC 3 cut(s) 19, 405, 537
EciI GGCGGA 2 cut(s) 130, 641
Eco130I CCWWGG 1 cut(s) 39
Eco91I GGTNACC 1 cut(s) 379
EcoO65I GGTNACC 1 cut(s) 379
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
Esp3I CGTCTC 2 cut(s) 467, 728
FaeI CATG 7 cut(s) 43, 112, 358, 431, 683, 804, 827
FaqI GGGAC 1 cut(s) 175
FatI CATG 7 cut(s) 39, 108, 354, 427, 679, 800, 823
FauI CCCGC 1 cut(s) 357
FbaI TGATCA 2 cut(s) 55, 589
Fnu4HI GCNGC 5 cut(s) 172, 288, 291, 294, 720
FokI GGATG 7 cut(s) 22, 91, 167, 560, 584, 629, 656
Fsp4HI GCNGC 5 cut(s) 172, 288, 291, 294, 720
FspBI CTAG 1 cut(s) 282
GlaI GCGC 1 cut(s) 297
GluI GCNGC 5 cut(s) 172, 288, 291, 294, 720
HapII CCGG 1 cut(s) 241
HgaI GACGC 1 cut(s) 210
HhaI GCGC 1 cut(s) 298
Hin1I GRCGYC 1 cut(s) 101
Hin1II CATG 7 cut(s) 43, 112, 358, 431, 683, 804, 827
Hin6I GCGC 1 cut(s) 296
HinP1I GCGC 1 cut(s) 296
HinfI GANTC 2 cut(s) 26, 340
HpaII CCGG 1 cut(s) 241
HphI GGTGA 3 cut(s) 81, 391, 695
Hpy188I TCNGA 8 cut(s) 25, 55, 79, 226, 315, 333, 407, 764
Hpy188III TCNNGA 4 cut(s) 160, 428, 512, 824
Hpy99I CGWCG 2 cut(s) 226, 392
HpyAV CCTTC 4 cut(s) 191, 252, 409, 700
HpyCH4III ACNGT 3 cut(s) 254, 321, 739
HpyCH4IV ACGT 2 cut(s) 101, 122
HpyCH4V TGCA 1 cut(s) 679
HpyF10VI GCNNNNNNNGC 2 cut(s) 287, 293
HpyF3I CTNAG 3 cut(s) 330, 404, 842
HpySE526I ACGT 2 cut(s) 101, 122
Hsp92I GRCGYC 1 cut(s) 101
Hsp92II CATG 7 cut(s) 43, 112, 358, 431, 683, 804, 827
HspAI GCGC 1 cut(s) 296
Ksp22I TGATCA 2 cut(s) 55, 589
Kzo9I GATC 7 cut(s) 55, 79, 449, 502, 589, 619, 773
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 5 cut(s) 243, 254, 379, 397, 608
Lsp1109I GCAGC 2 cut(s) 158, 274
MaeI CTAG 1 cut(s) 282
MaeII ACGT 2 cut(s) 101, 122
MaeIII GTNAC 4 cut(s) 97, 248, 379, 646
MalI GATC 7 cut(s) 57, 81, 451, 504, 591, 621, 775
MboI GATC 7 cut(s) 55, 79, 449, 502, 589, 619, 773
MflI RGATCY 1 cut(s) 449
MlyI GAGTC 1 cut(s) 20
MmeI TCCRAC 2 cut(s) 204, 742
MseI TTAA 2 cut(s) 636, 654
MspA1I CMGCKG 1 cut(s) 191
MspI CCGG 1 cut(s) 241
MvnI CGCG 1 cut(s) 298
MwoI GCNNNNNNNGC 2 cut(s) 287, 293
NcoI CCATGG 1 cut(s) 39
NdeII GATC 7 cut(s) 55, 79, 449, 502, 589, 619, 773
NlaIII CATG 7 cut(s) 43, 112, 358, 431, 683, 804, 827
NlaIV GGNNCC 1 cut(s) 228
NmeAIII GCCGAG 1 cut(s) 804
NmuCI GTSAC 2 cut(s) 97, 379
NspI RCATGY 1 cut(s) 358
PagI TCATGA 2 cut(s) 427, 823
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PfeI GAWTC 1 cut(s) 340
PkrI GCNGC 5 cut(s) 173, 289, 292, 295, 721
PleI GAGTC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 20
PshBI ATTAAT 2 cut(s) 636, 654
PspEI GGTNACC 1 cut(s) 379
PspN4I GGNNCC 1 cut(s) 228
PsuI RGATCY 1 cut(s) 449
SaqAI TTAA 2 cut(s) 636, 654
SatI GCNGC 5 cut(s) 172, 288, 291, 294, 720
Sau3AI GATC 7 cut(s) 55, 79, 449, 502, 589, 619, 773
SchI GAGTC 1 cut(s) 20
SmlI CTYRAG 2 cut(s) 368, 510
SmoI CTYRAG 2 cut(s) 368, 510
SsiI CCGC 8 cut(s) 141, 189, 290, 293, 350, 626, 719, 722
SspMI CTAG 1 cut(s) 282
StyI CCWWGG 1 cut(s) 39
TaaI ACNGT 3 cut(s) 254, 321, 739
TaiI ACGT 2 cut(s) 104, 125
TaqI TCGA 1 cut(s) 177
TauI GCSGC 3 cut(s) 293, 296, 722
TfiI GAWTC 1 cut(s) 340
Tru1I TTAA 2 cut(s) 636, 654
Tru9I TTAA 2 cut(s) 636, 654
TseFI GTSAC 2 cut(s) 97, 379
TseI GCWGC 2 cut(s) 171, 287
Tsp45I GTSAC 2 cut(s) 97, 379
TspDTI ATGAA 3 cut(s) 555, 570, 812
TspGWI ACGGA 2 cut(s) 205, 428
VspI ATTAAT 2 cut(s) 636, 654
XceI RCATGY 1 cut(s) 358
XspI CTAG 1 cut(s) 282
ZraI GACGTC 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.