Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002468

Physical Location & Seq

Genomic Coordinates Reverse (-)

42075960 .. 42078725

Gene Structure 2766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G510900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGCAGCTATATAACTCTATGCATCTCCCCAGTGAGCCTCACCCATGCCAAGCTCAAGCCCCTCTAGAATTTGGTCTCAAGGCCTTAAATCTTGACCTCAAAAAAAACACCCCTCACAAAAACTGCTCCATGATGCTGTCTGATCTTCTCTCTCCAACTTCTTCATCTCTCTTGTCTGGAGACTATATTGGAATGGAGAGCTCTGTGGACGTGCAGAAAGACTGTGAGAAGGACCAGGTGGTGCCAAATGATGATGAGGAGGAGGAGGAGGAGGGTCAAAGTGGTAATTTCAGGCAGAGGCTGATGGGTAGGAGGGAGCAAAAATGGGCAATGAGGAACAAGGAGTTTCCTCCTCCTATACCTTTGTTGGCTCGCACTGAGAACTTGCCTTCTCATATGCCTTGGGTGTTGAAAAGGCATTATACAAGTGATGGGAGGTTGATTTTGACTGAGGAGAAGGTTAGGCACCATGAGTACTTCAGGGCTCATAGGTCTAATGGCAGGCTCACTTTGCAGCTTGTGCCTTTGGATGATGAAGTTTTGATTTCCCCAGTTGCTTGTGATGAGGGAAATAAAGATGGGAATGGGAATGATAATGAGTATGATGATCAGGACCCACAATGTGATGATCATGGTGATCATGATGATGAAGAATATGATGAGGGAAAAAAAGATGGGAATGGAAATGGGAATGAGAATGAGTATGATGATCAGGACCCACAATGTGATGATCATGGTGATCATGATGATGAAGAATATGATGAGGATATTGATGGTGATGATGATGATGGTTATGTTGATGATGATGATCATGTGGTTGAAGATCAATCAATAAGTGGGAATATTGGCGGATCAGCAGCAGGGAAGTGCTTCAATTTCAACAGTGTGGGAACAGGATCACCTTGCATCTTTGGAGTGCCAGTGCCGGCCATCAGGCAGGTTCACAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAF

Protein Analysis

317

Amino Acids

35.47

Weight (kDa)

4.33

Isoelectric Point (pI)

53.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22110 AT1G22110 AT1G22110 AT1G77932
fragaria_vesca	FvH4_5g38140 FvH4_5g38160 FvH4_5g38160 FvH4_5g38160
malus_domestica	MD08G1176500.v1.1 MD08G1219800.v1.1 MD15G1363200.v1.1 MD15G1408400.v1.1 MD15G1409900.v1.1
prunus_persica	Prupe.1G096600_v2.0.a1 Prupe.1G510300_v2.0.a1 Prupe.1G510900_v2.0.a1 Prupe.1G552400_v2.0.a1
pyrus_communis	pycom08g19080 pycom15g32490
rosa_chinensis	RchiOBHm_Chr7g0240121
rosa_laevigata	RLG00000000700 RLG00000000701
rosa_multiflora	Rmu_sc0005008.1_g000021 Rmu_sc0005008.1_g000024
rosa_roxburghii	Rroxscaffold_3G00220390 Rroxscaffold_3G00220400
rosa_rugosa	Rorug04G0113200 Rorug07G0333300 Rorug07G0333500 Rorug07G0333600 Rorug07G0333700 Rorug07G0333800
rosa_samantha	Rh7AG487000 Rh7AG487200 Rh7BG459700 Rh7CG503800 Rh7CG503900 Rh7DG472100 Rh7DG472200
rosa_wichuraiana	Rw7G040810 Rw7G040820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	928
AccB1I	GGYRCC	2 cut(s)	241, 465
AciI	CCGC	1 cut(s)	849
AclWI	GGATC	2 cut(s)	859, 904
AcoI	YGGCCR	1 cut(s)	927
AcsI	RAATTY	1 cut(s)	68
AcuI	CTGAAG	1 cut(s)	463
AdeI	CACNNNGTG	2 cut(s)	623, 725
AfaI	GTAC	1 cut(s)	476
AgsI	TTSAA	4 cut(s)	412, 821, 874, 880
AjiI	CACGTC	1 cut(s)	211
AjnI	CCWGG	1 cut(s)	234
AluBI	AGCT	4 cut(s)	7, 53, 201, 517
AluI	AGCT	4 cut(s)	7, 53, 201, 517
Alw21I	GWGCWC	1 cut(s)	203
Alw26I	GTCTC	2 cut(s)	80, 174
AlwI	GGATC	2 cut(s)	859, 904
AlwNI	CAGNNNCTG	1 cut(s)	301
AoxI	GGCC	2 cut(s)	81, 927
ApeKI	GCWGC	3 cut(s)	4, 514, 857
ApoI	RAATTY	1 cut(s)	68
Asp700I	GAANNNNTTC	1 cut(s)	869
AspS9I	GGNCC	3 cut(s)	232, 613, 715
AsuHPI	GGTGA	5 cut(s)	32, 647, 749, 788, 891
AvaII	GGWCC	3 cut(s)	232, 613, 715
BanI	GGYRCC	2 cut(s)	241, 465
BanII	GRGCYC	2 cut(s)	203, 487
Bbv12I	GWGCWC	1 cut(s)	203
BbvI	GCAGC	3 cut(s)	16, 526, 869
BccI	CCATC	7 cut(s)	298, 425, 572, 668, 767, 782, 938
BciT130I	CCWGG	1 cut(s)	236
BclI	TGATCA	7 cut(s)	607, 628, 637, 709, 730, 739, 808
BcoDI	GTCTC	2 cut(s)	80, 174
BfaI	CTAG	1 cut(s)	65
BfuAI	ACCTGC	1 cut(s)	928
BisI	GCNGC	3 cut(s)	5, 515, 858
BlsI	GCNGC	3 cut(s)	6, 516, 859
BmcAI	AGTACT	1 cut(s)	476
Bme1390I	CCNGG	1 cut(s)	236
Bme18I	GGWCC	3 cut(s)	232, 613, 715
BmgBI	CACGTC	1 cut(s)	211
BmgT120I	GGNCC	3 cut(s)	232, 613, 715
BmiI	GGNNCC	4 cut(s)	243, 467, 615, 717
BmrFI	CCNGG	1 cut(s)	236
BmrI	ACTGGG	2 cut(s)	24, 545
BmsI	GCATC	3 cut(s)	31, 123, 915
BmuI	ACTGGG	2 cut(s)	24, 545
BpmI	CTGGAG	1 cut(s)	198
BpuEI	CTTGAG	2 cut(s)	39, 62
BsaBI	GATNNNNATC	1 cut(s)	807
BsaI	GGTCTC	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	401
BsaXI	ACNNNNNCTCC	2 cut(s)	906, 936
Bse118I	RCCGGY	1 cut(s)	925
Bse1I	ACTGG	3 cut(s)	30, 551, 920
Bse3DI	GCAATG	1 cut(s)	336
Bse8I	GATNNNNATC	1 cut(s)	807
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	1 cut(s)	401
BseGI	GGATG	1 cut(s)	535
BseJI	GATNNNNATC	1 cut(s)	807
BseMI	GCAATG	1 cut(s)	336
BseMII	CTCAG	2 cut(s)	369, 441
BseNI	ACTGG	3 cut(s)	30, 551, 920
BseRI	GAGGAG	7 cut(s)	272, 275, 278, 281, 284, 342, 467
BseXI	GCAGC	3 cut(s)	16, 526, 869
BsgI	GTGCAG	1 cut(s)	233
BshFI	GGCC	2 cut(s)	83, 929
BshNI	GGYRCC	2 cut(s)	241, 465
BsiHKAI	GWGCWC	1 cut(s)	203
BsiSI	CCGG	1 cut(s)	926
BsmAI	GTCTC	2 cut(s)	80, 174
BsnI	GGCC	2 cut(s)	83, 929
Bso31I	GGTCTC	1 cut(s)	80
Bsp1286I	GDGCHC	2 cut(s)	203, 487
BspACI	CCGC	1 cut(s)	849
BspANI	GGCC	2 cut(s)	83, 929
BspCNI	CTCAG	2 cut(s)	370, 442
BspHI	TCATGA	2 cut(s)	640, 742
BspLI	GGNNCC	4 cut(s)	243, 467, 615, 717
BspMI	ACCTGC	1 cut(s)	928
BspPI	GGATC	2 cut(s)	859, 904
BspT107I	GGYRCC	2 cut(s)	241, 465
BspTNI	GGTCTC	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	336
BsrFI	RCCGGY	1 cut(s)	925
BsrI	ACTGG	3 cut(s)	30, 551, 920
BssAI	RCCGGY	1 cut(s)	925
BssECI	CCNNGG	1 cut(s)	401
BssT1I	CCWWGG	1 cut(s)	401
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	3 cut(s)	224, 884, 947
BstAPI	GCANNNNNTGC	1 cut(s)	520
BstC8I	GCNNGC	3 cut(s)	373, 503, 927
BstDEI	CTNAG	2 cut(s)	378, 450
BstF5I	GGATG	1 cut(s)	535
BstMAI	GTCTC	2 cut(s)	80, 174
BstMWI	GCNNNNNNNGC	2 cut(s)	511, 520
BstNI	CCWGG	1 cut(s)	236
BstSCI	CCNGG	1 cut(s)	234
BstV1I	GCAGC	3 cut(s)	16, 526, 869
BsuRI	GGCC	2 cut(s)	83, 929
BtrI	CACGTC	1 cut(s)	211
BtsCI	GGATG	1 cut(s)	535
BtsIMutI	CAGTG	4 cut(s)	37, 375, 889, 927
BveI	ACCTGC	1 cut(s)	928
Cac8I	GCNNGC	3 cut(s)	373, 503, 927
CaiI	CAGNNNCTG	1 cut(s)	301
CciI	TCATGA	2 cut(s)	640, 742
Cfr10I	RCCGGY	1 cut(s)	925
Cfr13I	GGNCC	3 cut(s)	232, 613, 715
CsiI	ACCWGGT	1 cut(s)	234
Csp6I	GTAC	1 cut(s)	475
CviAII	CATG	8 cut(s)	45, 130, 470, 632, 641, 734, 743, 812
CviQI	GTAC	1 cut(s)	475
DdeI	CTNAG	2 cut(s)	378, 450
DraIII	CACNNNGTG	2 cut(s)	623, 725
EaeI	YGGCCR	1 cut(s)	927
EciI	GGCGGA	1 cut(s)	864
Ecl136II	GAGCTC	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	401
Eco147I	AGGCCT	1 cut(s)	83
Eco24I	GRGCYC	2 cut(s)	203, 487
Eco31I	GGTCTC	1 cut(s)	80
Eco47I	GGWCC	3 cut(s)	232, 613, 715
Eco53kI	GAGCTC	1 cut(s)	201
Eco57I	CTGAAG	1 cut(s)	463
EcoICRI	GAGCTC	1 cut(s)	201
EcoO109I	RGGNCCY	2 cut(s)	613, 715
EcoRII	CCWGG	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	401
EcoT22I	ATGCAT	1 cut(s)	24
EcoT38I	GRGCYC	2 cut(s)	203, 487
ErhI	CCWWGG	1 cut(s)	401
FaeI	CATG	8 cut(s)	48, 133, 473, 635, 644, 737, 746, 815
FatI	CATG	8 cut(s)	44, 129, 469, 631, 640, 733, 742, 811
FauNDI	CATATG	1 cut(s)	396
FbaI	TGATCA	7 cut(s)	607, 628, 637, 709, 730, 739, 808
Fnu4HI	GCNGC	3 cut(s)	5, 515, 858
FokI	GGATG	1 cut(s)	542
FriOI	GRGCYC	2 cut(s)	203, 487
Fsp4HI	GCNGC	3 cut(s)	5, 515, 858
FspBI	CTAG	1 cut(s)	65
GluI	GCNGC	3 cut(s)	5, 515, 858
GsuI	CTGGAG	1 cut(s)	198
HaeIII	GGCC	2 cut(s)	83, 929
HapII	CCGG	1 cut(s)	926
Hin1II	CATG	8 cut(s)	48, 133, 473, 635, 644, 737, 746, 815
HpaII	CCGG	1 cut(s)	926
HphI	GGTGA	5 cut(s)	32, 647, 749, 788, 891
Hpy166II	GTNNAC	2 cut(s)	208, 943
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	7 cut(s)	65, 92, 177, 611, 641, 713, 743
Hpy8I	GTNNAC	2 cut(s)	208, 943
HpyAV	CCTTC	3 cut(s)	223, 399, 451
HpyCH4III	ACNGT	3 cut(s)	224, 884, 947
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	5 cut(s)	4, 22, 214, 514, 906
HpyF10VI	GCNNNNNNNGC	2 cut(s)	511, 520
HpyF3I	CTNAG	2 cut(s)	378, 450
HpySE526I	ACGT	1 cut(s)	210
Hsp92II	CATG	8 cut(s)	48, 133, 473, 635, 644, 737, 746, 815
KroI	GCCGGC	1 cut(s)	925
KroNI	GCCGGC	1 cut(s)	927
Ksp22I	TGATCA	7 cut(s)	607, 628, 637, 709, 730, 739, 808
LmnI	GCTCC	2 cut(s)	131, 316
Lsp1109I	GCAGC	3 cut(s)	16, 526, 869
LweI	GCATC	3 cut(s)	31, 123, 915
MabI	ACCWGGT	1 cut(s)	234
MaeI	CTAG	1 cut(s)	65
MaeII	ACGT	1 cut(s)	210
MboII	GAAGA	5 cut(s)	137, 153, 662, 764, 833
MhlI	GDGCHC	2 cut(s)	203, 487
MluCI	AATT	3 cut(s)	68, 286, 874
MmeI	TCCRAC	1 cut(s)	179
Mph1103I	ATGCAT	1 cut(s)	24
MroNI	GCCGGC	1 cut(s)	925
MroXI	GAANNNNTTC	1 cut(s)	869
MseI	TTAA	2 cut(s)	86, 949
MslI	CAYNNNNRTG	2 cut(s)	645, 747
MspI	CCGG	1 cut(s)	926
MspR9I	CCNGG	1 cut(s)	236
MvaI	CCWGG	1 cut(s)	236
MwoI	GCNNNNNNNGC	2 cut(s)	511, 520
NaeI	GCCGGC	1 cut(s)	927
NdeI	CATATG	1 cut(s)	396
NgoMIV	GCCGGC	1 cut(s)	925
NlaIII	CATG	8 cut(s)	48, 133, 473, 635, 644, 737, 746, 815
NlaIV	GGNNCC	4 cut(s)	243, 467, 615, 717
NsiI	ATGCAT	1 cut(s)	24
PagI	TCATGA	2 cut(s)	640, 742
PceI	AGGCCT	1 cut(s)	83
PdiI	GCCGGC	1 cut(s)	927
PdmI	GAANNNNTTC	1 cut(s)	869
PkrI	GCNGC	3 cut(s)	6, 516, 859
PpuMI	RGGWCCY	2 cut(s)	613, 715
Psp124BI	GAGCTC	1 cut(s)	203
Psp5II	RGGWCCY	2 cut(s)	613, 715
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	4 cut(s)	243, 467, 615, 717
PspPI	GGNCC	3 cut(s)	232, 613, 715
PspPPI	RGGWCCY	2 cut(s)	613, 715
PstNI	CAGNNNCTG	1 cut(s)	301
RsaI	GTAC	1 cut(s)	476
RsaNI	GTAC	1 cut(s)	475
RseI	CAYNNNNRTG	2 cut(s)	645, 747
SacI	GAGCTC	1 cut(s)	203
SaqAI	TTAA	2 cut(s)	86, 949
SatI	GCNGC	3 cut(s)	5, 515, 858
Sau96I	GGNCC	3 cut(s)	232, 613, 715
ScaI	AGTACT	1 cut(s)	476
ScrFI	CCNGG	1 cut(s)	236
SduI	GDGCHC	2 cut(s)	203, 487
SexAI	ACCWGGT	1 cut(s)	234
SfaNI	GCATC	3 cut(s)	31, 123, 915
SinI	GGWCC	3 cut(s)	232, 613, 715
SmiMI	CAYNNNNRTG	2 cut(s)	645, 747
SmlI	CTYRAG	2 cut(s)	54, 77
SmoI	CTYRAG	2 cut(s)	54, 77
Sse9I	AATT	3 cut(s)	68, 286, 874
SseBI	AGGCCT	1 cut(s)	83
SsiI	CCGC	1 cut(s)	849
SspI	AATATT	1 cut(s)	844
SspMI	CTAG	1 cut(s)	65
SstI	GAGCTC	1 cut(s)	203
StuI	AGGCCT	1 cut(s)	83
StyD4I	CCNGG	1 cut(s)	234
StyI	CCWWGG	1 cut(s)	401
TaaI	ACNGT	3 cut(s)	224, 884, 947
TaiI	ACGT	1 cut(s)	213
TasI	AATT	3 cut(s)	68, 286, 874
TatI	WGTACW	1 cut(s)	474
Tru1I	TTAA	2 cut(s)	86, 949
Tru9I	TTAA	2 cut(s)	86, 949
TscAI	CASTG	4 cut(s)	37, 382, 889, 927
TseI	GCWGC	3 cut(s)	4, 514, 857
TspDTI	ATGAA	4 cut(s)	153, 549, 663, 765
TspRI	CASTG	4 cut(s)	37, 382, 889, 927
VpaK11BI	GGWCC	3 cut(s)	232, 613, 715
XapI	RAATTY	1 cut(s)	68
XbaI	TCTAGA	1 cut(s)	64
XmnI	GAANNNNTTC	1 cut(s)	869
XspI	CTAG	1 cut(s)	65
ZrmI	AGTACT	1 cut(s)	476
Zsp2I	ATGCAT	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.