Rh7AG487000

protein dimerization activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0002468
Physical Location & Seq
Forward (+)
68716541 .. 68719741
3201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG487000.1

Sequence Viewer

Length: 870 bp
ATGCAGATCTCCAGAGACCATGATGACAATCCATGCCTAAAACAACAACAACAACTACCCCAACGCTCTCTTCATTTGGGTCTCAAGGACCACACTATTGTACCCCATCATCCACAAACCCCAGTATCCCACCAAAATAGTCCCTCCTCCGCCATGTTGGCCGATCTCTTGTCCCCAACCATGATCCCGGGACTCATGTCCGGGGACTACATTGGGATGGAGAGCTGCGTTGACGTCCTCAGGGATGAAGACGAATCACACTGCGATTACAAACAACAAAACTGCTACAACCAAAAGGTGCAAGACAAGAGAGAGGAGAAGAGACTGGCGATGATGAAGAGGATGGAGCTTCCTCCTCCGATTCCGATGCTGGCGCGCACGGAGAATCTCCCCTCCCACATGCCGTGGGTTTTGAAGAGGCATTACACGACCGATGGAAGGTTGATTTTGACAGAGGAGAAGGTCAGGCATCATGAGTATTTTAGGGCGCACAGATCCAACGGCAGACTGACCTTGCAGCTCGTTCCTCTTGATGACGAGTTGTTGGCCTCGCCTTTCACGGCCAATCAGAAGGACAATATGGATGAGGCAAATGCTCATGATGATGACGACAGCGAAGAAAATGAAGAGGATGATTGTGATAGGTATGATGATGGATGTAGTGAGGATGAGGAAGAGGAAGAGGAGGAGAAAGAGAAAGAGGAGGAGGAGGATGAACAAGATGATGGGGTTGATGATTTACAGCACCATGATGGTGTGCCTGAAGAGCCAATTTCGACAGGAAAGTGTTTCAATTTCAACAGTGTGGGAACAGGTTCCCGGTGTATTTTCGGGGTGCCAGTGCCAACGATCAGGCAAGTTCATAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413

Protein Analysis

289

Amino Acids

33.22

Weight (kDa)

4.62

Isoelectric Point (pI)

69.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 116 - 174 6.5e-20 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 237
AccB1I GGYRCC 1 cut(s) 835
AccII CGCG 1 cut(s) 376
AciI CCGC 1 cut(s) 150
AclWI GGATC 2 cut(s) 178, 489
AcoI YGGCCR 2 cut(s) 159, 561
AcuI CTGAAG 1 cut(s) 783
AcyI GRCGYC 1 cut(s) 234
AfaI GTAC 1 cut(s) 102
AfiI CCNNNNNNNGG 1 cut(s) 438
AgsI TTSAA 3 cut(s) 415, 793, 799
AjuI GAANNNNNNNTTGG 2 cut(s) 54, 86
AluBI AGCT 3 cut(s) 225, 349, 520
AluI AGCT 3 cut(s) 225, 349, 520
Alw26I GTCTC 3 cut(s) 9, 86, 316
AlwI GGATC 2 cut(s) 178, 489
Ama87I CYCGRG 1 cut(s) 187
AoxI GGCC 3 cut(s) 159, 546, 561
ApeKI GCWGC 2 cut(s) 225, 517
Asp700I GAANNNNTTC 1 cut(s) 814
AspLEI GCGC 3 cut(s) 376, 378, 490
AspS9I GGNCC 1 cut(s) 88
AsuC2I CCSGG 4 cut(s) 188, 189, 202, 820
AvaI CYCGRG 1 cut(s) 187
AvaII GGWCC 1 cut(s) 88
AxyI CCTNAGG 1 cut(s) 239
BaeI ACNNNNGTAYC 4 cut(s) 84, 108, 117, 141
BanI GGYRCC 1 cut(s) 835
BarI GAAGNNNNNNTAC 2 cut(s) 407, 439
BbsI GAAGAC 1 cut(s) 255
BbvI GCAGC 2 cut(s) 212, 529
BccI CCATC 7 cut(s) 114, 211, 337, 428, 647, 719, 746
BceAI ACGGC 3 cut(s) 388, 517, 576
BcgI CGANNNNNNTGC 2 cut(s) 349, 383
BciVI GTATCC 1 cut(s) 136
BcnI CCSGG 4 cut(s) 188, 189, 202, 820
BcoDI GTCTC 3 cut(s) 9, 86, 316
BfuI GTATCC 1 cut(s) 136
BglI GCCNNNNNGGC 1 cut(s) 158
BglII AGATCT 1 cut(s) 6
BisI GCNGC 2 cut(s) 226, 518
BlsI GCNGC 2 cut(s) 227, 519
Bme1390I CCNGG 4 cut(s) 188, 189, 202, 820
Bme18I GGWCC 1 cut(s) 88
BmeT110I CYCGRG 1 cut(s) 187
BmgT120I GGNCC 1 cut(s) 88
BmiI GGNNCC 2 cut(s) 817, 837
BmrFI CCNGG 4 cut(s) 188, 189, 202, 820
BmrI ACTGGG 1 cut(s) 116
BmsI GCATC 2 cut(s) 357, 478
BmuI ACTGGG 1 cut(s) 116
BoxI GACNNNNGTC 1 cut(s) 196
BpiI GAAGAC 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 68
BpuMI CCSGG 4 cut(s) 188, 189, 202, 820
BsaBI GATNNNNATC 1 cut(s) 27
BsaHI GRCGYC 1 cut(s) 234
BsaI GGTCTC 2 cut(s) 9, 86
BsaJI CCNNGG 3 cut(s) 187, 201, 404
Bsc4I CCNNNNNNNGG 1 cut(s) 438
Bse1I ACTGG 3 cut(s) 122, 330, 839
Bse21I CCTNAGG 1 cut(s) 239
Bse8I GATNNNNATC 1 cut(s) 27
BseDI CCNNGG 3 cut(s) 187, 201, 404
BseGI GGATG 9 cut(s) 109, 222, 250, 348, 589, 637, 662, 673, 718
BseJI GATNNNNATC 1 cut(s) 27
BseLI CCNNNNNNNGG 1 cut(s) 438
BseMII CTCAG 1 cut(s) 253
BseNI ACTGG 3 cut(s) 122, 330, 839
BsePI GCGCGC 1 cut(s) 374
BseRI GAGGAG 9 cut(s) 136, 329, 345, 470, 698, 701, 716, 719, 722
BseXI GCAGC 2 cut(s) 212, 529
Bsh1236I CGCG 1 cut(s) 376
Bsh1285I CGRYCG 1 cut(s) 432
BshFI GGCC 3 cut(s) 161, 548, 563
BshNI GGYRCC 1 cut(s) 835
BsiEI CGRYCG 1 cut(s) 432
BsiHKCI CYCGRG 1 cut(s) 187
BsiSI CCGG 3 cut(s) 188, 201, 820
BslFI GGGAC 4 cut(s) 126, 157, 204, 218
BslI CCNNNNNNNGG 1 cut(s) 438
BsmAI GTCTC 3 cut(s) 9, 86, 316
BsmFI GGGAC 4 cut(s) 126, 157, 204, 218
BsnI GGCC 3 cut(s) 161, 548, 563
Bso31I GGTCTC 2 cut(s) 9, 86
BsoBI CYCGRG 1 cut(s) 187
Bsp143I GATC 5 cut(s) 6, 163, 183, 494, 849
BspACI CCGC 1 cut(s) 150
BspANI GGCC 3 cut(s) 161, 548, 563
BspCNI CTCAG 1 cut(s) 252
BspFNI CGCG 1 cut(s) 376
BspHI TCATGA 2 cut(s) 472, 598
BspLI GGNNCC 2 cut(s) 817, 837
BspPI GGATC 2 cut(s) 178, 489
BspQI GCTCTTC 1 cut(s) 759
BspT107I GGYRCC 1 cut(s) 835
BspTNI GGTCTC 2 cut(s) 9, 86
BsrI ACTGG 3 cut(s) 122, 330, 839
BssECI CCNNGG 3 cut(s) 187, 201, 404
BssHII GCGCGC 1 cut(s) 374
BssMI GATC 5 cut(s) 6, 163, 183, 494, 849
BssNI GRCGYC 1 cut(s) 234
Bst4CI ACNGT 1 cut(s) 803
Bst6I CTCTTC 8 cut(s) 75, 314, 332, 410, 621, 669, 675, 759
BstACI GRCGYC 1 cut(s) 234
BstC8I GCNNGC 2 cut(s) 372, 376
BstDEI CTNAG 1 cut(s) 239
BstDSI CCRYGG 1 cut(s) 404
BstF5I GGATG 9 cut(s) 109, 222, 250, 348, 589, 637, 662, 673, 718
BstFNI CGCG 1 cut(s) 376
BstHHI GCGC 3 cut(s) 376, 378, 490
BstKTI GATC 5 cut(s) 9, 166, 186, 497, 852
BstMAI GTCTC 3 cut(s) 9, 86, 316
BstMBI GATC 5 cut(s) 6, 163, 183, 494, 849
BstMCI CGRYCG 1 cut(s) 432
BstMWI GCNNNNNNNGC 2 cut(s) 158, 766
BstNSI RCATGY 1 cut(s) 403
BstPAI GACNNNNGTC 1 cut(s) 196
BstSCI CCNGG 4 cut(s) 186, 187, 200, 818
BstUI CGCG 1 cut(s) 376
BstV1I GCAGC 2 cut(s) 212, 529
BstV2I GAAGAC 1 cut(s) 255
BstX2I RGATCY 2 cut(s) 6, 494
BstYI RGATCY 2 cut(s) 6, 494
Bsu36I CCTNAGG 1 cut(s) 239
BsuI GTATCC 1 cut(s) 136
BsuRI GGCC 3 cut(s) 161, 548, 563
BtgI CCRYGG 1 cut(s) 404
BtgZI GCGATG 1 cut(s) 344
BtsCI GGATG 9 cut(s) 109, 222, 250, 348, 589, 637, 662, 673, 718
BtsI GCAGTG 1 cut(s) 259
BtsIMutI CAGTG 3 cut(s) 259, 808, 846
Cac8I GCNNGC 2 cut(s) 372, 376
CciI TCATGA 2 cut(s) 472, 598
CfoI GCGC 3 cut(s) 376, 378, 490
Cfr13I GGNCC 1 cut(s) 88
Cfr9I CCCGGG 1 cut(s) 187
Csp6I GTAC 1 cut(s) 101
CviAII CATG 9 cut(s) 20, 33, 154, 181, 196, 400, 473, 599, 749
CviJI RGCY 7 cut(s) 161, 225, 349, 520, 548, 563, 769
CviKI_1 RGCY 7 cut(s) 161, 225, 349, 520, 548, 563, 769
CviQI GTAC 1 cut(s) 101
DdeI CTNAG 1 cut(s) 239
DpnI GATC 5 cut(s) 8, 165, 185, 496, 851
DpnII GATC 5 cut(s) 6, 163, 183, 494, 849
EaeI YGGCCR 2 cut(s) 159, 561
Eam1104I CTCTTC 8 cut(s) 75, 314, 332, 410, 621, 669, 675, 759
EarI CTCTTC 8 cut(s) 75, 314, 332, 410, 621, 669, 675, 759
EciI GGCGGA 1 cut(s) 139
Eco31I GGTCTC 2 cut(s) 9, 86
Eco47I GGWCC 1 cut(s) 88
Eco57I CTGAAG 1 cut(s) 783
Eco81I CCTNAGG 1 cut(s) 239
Eco88I CYCGRG 1 cut(s) 187
FaeI CATG 9 cut(s) 23, 36, 157, 184, 199, 403, 476, 602, 752
FaqI GGGAC 4 cut(s) 126, 157, 204, 218
FatI CATG 9 cut(s) 19, 32, 153, 180, 195, 399, 472, 598, 748
Fnu4HI GCNGC 2 cut(s) 226, 518
FokI GGATG 9 cut(s) 96, 229, 257, 355, 596, 644, 669, 680, 725
Fsp4HI GCNGC 2 cut(s) 226, 518
GlaI GCGC 3 cut(s) 375, 377, 489
GluI GCNGC 2 cut(s) 226, 518
HaeIII GGCC 3 cut(s) 161, 548, 563
HapII CCGG 3 cut(s) 188, 201, 820
HhaI GCGC 3 cut(s) 376, 378, 490
Hin1I GRCGYC 1 cut(s) 234
Hin1II CATG 9 cut(s) 23, 36, 157, 184, 199, 403, 476, 602, 752
Hin6I GCGC 3 cut(s) 374, 376, 488
HinP1I GCGC 3 cut(s) 374, 376, 488
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HinfI GANTC 4 cut(s) 192, 254, 361, 385
HpaII CCGG 3 cut(s) 188, 201, 820
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 3 cut(s) 360, 366, 570
Hpy188III TCNNGA 4 cut(s) 12, 473, 530, 599
Hpy8I GTNNAC 1 cut(s) 232
HpyAV CCTTC 3 cut(s) 432, 454, 565
HpyCH4III ACNGT 1 cut(s) 803
HpyCH4IV ACGT 1 cut(s) 234
HpyCH4V TGCA 3 cut(s) 4, 301, 517
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 766
HpyF3I CTNAG 1 cut(s) 239
HpySE526I ACGT 1 cut(s) 234
Hsp92I GRCGYC 1 cut(s) 234
Hsp92II CATG 9 cut(s) 23, 36, 157, 184, 199, 403, 476, 602, 752
HspAI GCGC 3 cut(s) 374, 376, 488
Kzo9I GATC 5 cut(s) 6, 163, 183, 494, 849
LguI GCTCTTC 1 cut(s) 759
LmnI GCTCC 1 cut(s) 346
Lsp1109I GCAGC 2 cut(s) 212, 529
LweI GCATC 2 cut(s) 357, 478
MaeII ACGT 1 cut(s) 234
MalI GATC 5 cut(s) 8, 165, 185, 496, 851
MboI GATC 5 cut(s) 6, 163, 183, 494, 849
MflI RGATCY 2 cut(s) 6, 494
MluCI AATT 2 cut(s) 771, 793
MlyI GAGTC 1 cut(s) 186
MmeI TCCRAC 1 cut(s) 522
MroXI GAANNNNTTC 1 cut(s) 814
MslI CAYNNNNRTG 4 cut(s) 215, 603, 750, 753
MspI CCGG 3 cut(s) 188, 201, 820
MspR9I CCNGG 4 cut(s) 188, 189, 202, 820
MvnI CGCG 1 cut(s) 376
MwoI GCNNNNNNNGC 2 cut(s) 158, 766
NciI CCSGG 4 cut(s) 188, 189, 202, 820
NdeII GATC 5 cut(s) 6, 163, 183, 494, 849
NlaIII CATG 9 cut(s) 23, 36, 157, 184, 199, 403, 476, 602, 752
NlaIV GGNNCC 2 cut(s) 817, 837
NspI RCATGY 1 cut(s) 403
PagI TCATGA 2 cut(s) 472, 598
PauI GCGCGC 1 cut(s) 374
PciSI GCTCTTC 1 cut(s) 759
PdmI GAANNNNTTC 1 cut(s) 814
PfeI GAWTC 3 cut(s) 254, 361, 385
PkrI GCNGC 2 cut(s) 227, 519
PleI GAGTC 1 cut(s) 186
PpsI GAGTC 1 cut(s) 186
PshAI GACNNNNGTC 1 cut(s) 196
PspN4I GGNNCC 2 cut(s) 817, 837
PspPI GGNCC 1 cut(s) 88
PsuI RGATCY 2 cut(s) 6, 494
PteI GCGCGC 1 cut(s) 374
RsaI GTAC 1 cut(s) 102
RsaNI GTAC 1 cut(s) 101
RseI CAYNNNNRTG 4 cut(s) 215, 603, 750, 753
SapI GCTCTTC 1 cut(s) 759
SatI GCNGC 2 cut(s) 226, 518
Sau3AI GATC 5 cut(s) 6, 163, 183, 494, 849
Sau96I GGNCC 1 cut(s) 88
SchI GAGTC 1 cut(s) 186
ScrFI CCNGG 4 cut(s) 188, 189, 202, 820
SfaNI GCATC 2 cut(s) 357, 478
SinI GGWCC 1 cut(s) 88
SmaI CCCGGG 1 cut(s) 189
SmiMI CAYNNNNRTG 4 cut(s) 215, 603, 750, 753
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 2 cut(s) 771, 793
SsiI CCGC 1 cut(s) 150
StyD4I CCNGG 4 cut(s) 186, 187, 200, 818
TaaI ACNGT 1 cut(s) 803
TaiI ACGT 1 cut(s) 237
TaqI TCGA 1 cut(s) 776
TaqII GACCGA 1 cut(s) 446
TasI AATT 2 cut(s) 771, 793
TfiI GAWTC 3 cut(s) 254, 361, 385
TscAI CASTG 3 cut(s) 266, 808, 846
TseI GCWGC 2 cut(s) 225, 517
TspDTI ATGAA 6 cut(s) 62, 261, 350, 639, 729, 851
TspGWI ACGGA 1 cut(s) 395
TspMI CCCGGG 1 cut(s) 187
TspRI CASTG 3 cut(s) 266, 808, 846
VpaK11BI GGWCC 1 cut(s) 88
XceI RCATGY 1 cut(s) 403
XmaI CCCGGG 1 cut(s) 187
XmnI GAANNNNTTC 1 cut(s) 814
ZraI GACGTC 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.