RLG00000000701

protein dimerization activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0002468
Physical Location & Seq
Reverse (-)
4065126 .. 4066001
876 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000701

Sequence Viewer

Length: 876 bp
ATGCAGATCTCCAGAGACCATGATGACAATCCATGCCTAAAACAACAGCAACAACTACCCCTTTGCTCTCTTCATTTGGGTCTCAAGGACCACACTATTGTACCCCATCAACCACAAACCCCAGTATCCCACCAATATAGTCCCTCCTCCGCCATGTTGGCCGATCTCTTGTCCCCAACCATGATCCCAGGACTCATGTCCGGGGACTACATTGGGATGGAGAGCTGCGTCGACGTCCTCAGGGATGAAGATGAATCTCACTGCGATTACAAACAACAAAACTGCTACAACCAAAGGGTGCAAGACAAGAGAGAGGAGAAGAGACTGGCGATAATGAAGAGGAAGGAGCTTCCTCCTCCGATTCCGATGCTGGCGCGCACGGAGAATCTCCCCTCCCACATGCCGTGGGTTTTGAAGAGGCATTACACGACCGATGGAAGGTTGATTTTGACAGAGGAGAAGGTCAGGCATCATGAGTATTTTAGGGCGCACAGATCCAACGGCCGACTGACCTTGCAGCTCGTTCCTCTTGATGACGAGTTGTTGGCCTCGCCTTTCACGGCCAATCAGAAGGACAATATGGATGCGGCAAATGCTCATGATGACGACGACATAGAAGAGAATGAAGAGGATGATTATGATAGGTATGATGACGGATGTGGTGAGAAGGAAGAGGAAGAGGAAGAGGAAGAGGAGAAAGAGAAAGAGGAGGAGGAGAATGAACATGATGACGGGGTTGATGATTTGCAGCACCATGATGGTGTGCCTGAAGAGCCAATTTCGACAGGAAAGTGTTTCAATTTCAACAGTGTGGGAACAGGTTCTCCGTGTATTTTCGGGGTGCCAGTGCCGGCGATCAGGCAAGTTCATAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413

Protein Analysis

292

Amino Acids

33.39

Weight (kDa)

4.65

Isoelectric Point (pI)

68.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 116 - 174 6.6e-20 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 237
AccB1I GGYRCC 1 cut(s) 841
AccI GTMKAC 1 cut(s) 231
AccII CGCG 1 cut(s) 376
AciI CCGC 2 cut(s) 150, 587
AclWI GGATC 2 cut(s) 178, 489
AcoI YGGCCR 3 cut(s) 159, 502, 561
AcuI CTGAAG 1 cut(s) 789
AcyI GRCGYC 1 cut(s) 234
AfaI GTAC 1 cut(s) 102
AfiI CCNNNNNNNGG 1 cut(s) 438
AgsI TTSAA 3 cut(s) 415, 799, 805
AjnI CCWGG 1 cut(s) 187
AloI GAACNNNNNNTCC 2 cut(s) 808, 840
AluBI AGCT 3 cut(s) 225, 349, 520
AluI AGCT 3 cut(s) 225, 349, 520
Alw26I GTCTC 3 cut(s) 9, 86, 316
AlwI GGATC 2 cut(s) 178, 489
AoxI GGCC 4 cut(s) 159, 502, 546, 561
ApeKI GCWGC 3 cut(s) 225, 517, 748
Asp700I GAANNNNTTC 1 cut(s) 820
AspLEI GCGC 3 cut(s) 376, 378, 490
AspS9I GGNCC 1 cut(s) 88
AsuC2I CCSGG 1 cut(s) 202
AsuHPI GGTGA 1 cut(s) 674
AvaII GGWCC 1 cut(s) 88
AxyI CCTNAGG 1 cut(s) 239
BaeI ACNNNNGTAYC 4 cut(s) 84, 108, 117, 141
BanI GGYRCC 1 cut(s) 841
BarI GAAGNNNNNNTAC 2 cut(s) 407, 439
BbvI GCAGC 3 cut(s) 212, 529, 760
BccI CCATC 4 cut(s) 114, 211, 428, 752
BceAI ACGGC 3 cut(s) 388, 517, 576
BcgI CGANNNNNNTGC 2 cut(s) 349, 383
BciT130I CCWGG 1 cut(s) 189
BciVI GTATCC 1 cut(s) 136
BcnI CCSGG 1 cut(s) 202
BcoDI GTCTC 3 cut(s) 9, 86, 316
BfuI GTATCC 1 cut(s) 136
BglI GCCNNNNNGGC 1 cut(s) 158
BglII AGATCT 1 cut(s) 6
BisI GCNGC 4 cut(s) 226, 518, 588, 749
BlsI GCNGC 4 cut(s) 227, 519, 589, 750
Bme1390I CCNGG 2 cut(s) 189, 202
Bme18I GGWCC 1 cut(s) 88
BmgT120I GGNCC 1 cut(s) 88
BmiI GGNNCC 1 cut(s) 843
BmrFI CCNGG 2 cut(s) 189, 202
BmrI ACTGGG 1 cut(s) 116
BmsI GCATC 3 cut(s) 357, 478, 574
BmuI ACTGGG 1 cut(s) 116
BoxI GACNNNNGTC 1 cut(s) 196
BpuEI CTTGAG 1 cut(s) 68
BpuMI CCSGG 1 cut(s) 202
BsaBI GATNNNNATC 1 cut(s) 27
BsaHI GRCGYC 1 cut(s) 234
BsaI GGTCTC 2 cut(s) 9, 86
BsaJI CCNNGG 3 cut(s) 187, 201, 404
BsaXI ACNNNNNCTCC 2 cut(s) 808, 838
Bsc4I CCNNNNNNNGG 1 cut(s) 438
Bse118I RCCGGY 1 cut(s) 850
Bse1I ACTGG 3 cut(s) 122, 330, 845
Bse21I CCTNAGG 1 cut(s) 239
Bse8I GATNNNNATC 1 cut(s) 27
BseBI CCWGG 1 cut(s) 189
BseDI CCNNGG 3 cut(s) 187, 201, 404
BseGI GGATG 5 cut(s) 222, 250, 589, 637, 662
BseJI GATNNNNATC 1 cut(s) 27
BseLI CCNNNNNNNGG 1 cut(s) 438
BseMII CTCAG 1 cut(s) 253
BseNI ACTGG 3 cut(s) 122, 330, 845
BsePI GCGCGC 1 cut(s) 374
BseRI GAGGAG 8 cut(s) 136, 329, 345, 470, 707, 722, 725, 728
BseX3I CGGCCG 1 cut(s) 502
BseXI GCAGC 3 cut(s) 212, 529, 760
Bsh1236I CGCG 1 cut(s) 376
Bsh1285I CGRYCG 2 cut(s) 432, 505
BshFI GGCC 4 cut(s) 161, 504, 548, 563
BshNI GGYRCC 1 cut(s) 841
BsiEI CGRYCG 2 cut(s) 432, 505
BsiSI CCGG 2 cut(s) 201, 851
BslFI GGGAC 3 cut(s) 126, 157, 218
BslI CCNNNNNNNGG 1 cut(s) 438
BsmAI GTCTC 3 cut(s) 9, 86, 316
BsmFI GGGAC 3 cut(s) 126, 157, 218
BsnI GGCC 4 cut(s) 161, 504, 548, 563
Bso31I GGTCTC 2 cut(s) 9, 86
Bsp143I GATC 5 cut(s) 6, 163, 183, 494, 855
BspACI CCGC 2 cut(s) 150, 587
BspANI GGCC 4 cut(s) 161, 504, 548, 563
BspCNI CTCAG 1 cut(s) 252
BspFNI CGCG 1 cut(s) 376
BspHI TCATGA 2 cut(s) 472, 598
BspLI GGNNCC 1 cut(s) 843
BspPI GGATC 2 cut(s) 178, 489
BspQI GCTCTTC 1 cut(s) 765
BspT107I GGYRCC 1 cut(s) 841
BspTNI GGTCTC 2 cut(s) 9, 86
BsrFI RCCGGY 1 cut(s) 850
BsrI ACTGG 3 cut(s) 122, 330, 845
BssAI RCCGGY 1 cut(s) 850
BssECI CCNNGG 3 cut(s) 187, 201, 404
BssHII GCGCGC 1 cut(s) 374
BssMI GATC 5 cut(s) 6, 163, 183, 494, 855
BssNI GRCGYC 1 cut(s) 234
Bst2UI CCWGG 1 cut(s) 189
Bst4CI ACNGT 1 cut(s) 809
BstACI GRCGYC 1 cut(s) 234
BstC8I GCNNGC 3 cut(s) 372, 376, 852
BstDEI CTNAG 1 cut(s) 239
BstDSI CCRYGG 1 cut(s) 404
BstF5I GGATG 5 cut(s) 222, 250, 589, 637, 662
BstFNI CGCG 1 cut(s) 376
BstHHI GCGC 3 cut(s) 376, 378, 490
BstKTI GATC 5 cut(s) 9, 166, 186, 497, 858
BstMAI GTCTC 3 cut(s) 9, 86, 316
BstMBI GATC 5 cut(s) 6, 163, 183, 494, 855
BstMCI CGRYCG 2 cut(s) 432, 505
BstMWI GCNNNNNNNGC 3 cut(s) 158, 593, 772
BstNI CCWGG 1 cut(s) 189
BstNSI RCATGY 1 cut(s) 403
BstPAI GACNNNNGTC 1 cut(s) 196
BstSCI CCNGG 2 cut(s) 187, 200
BstUI CGCG 1 cut(s) 376
BstV1I GCAGC 3 cut(s) 212, 529, 760
BstX2I RGATCY 2 cut(s) 6, 494
BstYI RGATCY 2 cut(s) 6, 494
BstZI CGGCCG 1 cut(s) 502
Bsu36I CCTNAGG 1 cut(s) 239
BsuI GTATCC 1 cut(s) 136
BsuRI GGCC 4 cut(s) 161, 504, 548, 563
BtgI CCRYGG 1 cut(s) 404
BtsCI GGATG 5 cut(s) 222, 250, 589, 637, 662
BtsI GCAGTG 1 cut(s) 259
BtsIMutI CAGTG 3 cut(s) 259, 814, 852
Cac8I GCNNGC 3 cut(s) 372, 376, 852
CciI TCATGA 2 cut(s) 472, 598
CfoI GCGC 3 cut(s) 376, 378, 490
Cfr10I RCCGGY 1 cut(s) 850
Cfr13I GGNCC 1 cut(s) 88
CseI GACGC 1 cut(s) 217
Csp6I GTAC 1 cut(s) 101
CviJI RGCY 8 cut(s) 161, 225, 349, 504, 520, 548, 563, 775
CviKI_1 RGCY 8 cut(s) 161, 225, 349, 504, 520, 548, 563, 775
CviQI GTAC 1 cut(s) 101
DdeI CTNAG 1 cut(s) 239
DpnI GATC 5 cut(s) 8, 165, 185, 496, 857
DpnII GATC 5 cut(s) 6, 163, 183, 494, 855
EaeI YGGCCR 3 cut(s) 159, 502, 561
EagI CGGCCG 1 cut(s) 502
EciI GGCGGA 1 cut(s) 139
EclXI CGGCCG 1 cut(s) 502
Eco31I GGTCTC 2 cut(s) 9, 86
Eco47I GGWCC 1 cut(s) 88
Eco52I CGGCCG 1 cut(s) 502
Eco57I CTGAAG 1 cut(s) 789
Eco81I CCTNAGG 1 cut(s) 239
EcoRII CCWGG 1 cut(s) 187
FaqI GGGAC 3 cut(s) 126, 157, 218
FblI GTMKAC 1 cut(s) 231
Fnu4HI GCNGC 4 cut(s) 226, 518, 588, 749
FokI GGATG 5 cut(s) 229, 257, 596, 644, 669
Fsp4HI GCNGC 4 cut(s) 226, 518, 588, 749
GlaI GCGC 3 cut(s) 375, 377, 489
GluI GCNGC 4 cut(s) 226, 518, 588, 749
HaeIII GGCC 4 cut(s) 161, 504, 548, 563
HapII CCGG 2 cut(s) 201, 851
HgaI GACGC 1 cut(s) 217
HhaI GCGC 3 cut(s) 376, 378, 490
Hin1I GRCGYC 1 cut(s) 234
Hin6I GCGC 3 cut(s) 374, 376, 488
HinP1I GCGC 3 cut(s) 374, 376, 488
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HinfI GANTC 4 cut(s) 192, 254, 361, 385
HpaII CCGG 2 cut(s) 201, 851
HphI GGTGA 1 cut(s) 674
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 3 cut(s) 360, 366, 570
Hpy188III TCNNGA 4 cut(s) 12, 473, 530, 599
Hpy8I GTNNAC 1 cut(s) 232
Hpy99I CGWCG 3 cut(s) 233, 236, 611
HpyAV CCTTC 5 cut(s) 337, 432, 454, 565, 661
HpyCH4III ACNGT 1 cut(s) 809
HpyCH4IV ACGT 1 cut(s) 234
HpyCH4V TGCA 4 cut(s) 4, 301, 517, 748
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 593, 772
HpyF3I CTNAG 1 cut(s) 239
HpySE526I ACGT 1 cut(s) 234
Hsp92I GRCGYC 1 cut(s) 234
HspAI GCGC 3 cut(s) 374, 376, 488
KroI GCCGGC 1 cut(s) 850
KroNI GCCGGC 1 cut(s) 852
Kzo9I GATC 5 cut(s) 6, 163, 183, 494, 855
LguI GCTCTTC 1 cut(s) 765
LmnI GCTCC 1 cut(s) 346
Lsp1109I GCAGC 3 cut(s) 212, 529, 760
LweI GCATC 3 cut(s) 357, 478, 574
MaeII ACGT 1 cut(s) 234
MalI GATC 5 cut(s) 8, 165, 185, 496, 857
MboI GATC 5 cut(s) 6, 163, 183, 494, 855
MflI RGATCY 2 cut(s) 6, 494
MluCI AATT 2 cut(s) 777, 799
MlyI GAGTC 1 cut(s) 186
MmeI TCCRAC 1 cut(s) 522
MroNI GCCGGC 1 cut(s) 850
MroXI GAANNNNTTC 1 cut(s) 820
MslI CAYNNNNRTG 3 cut(s) 215, 756, 759
MspI CCGG 2 cut(s) 201, 851
MspR9I CCNGG 2 cut(s) 189, 202
MvaI CCWGG 1 cut(s) 189
MvnI CGCG 1 cut(s) 376
MwoI GCNNNNNNNGC 3 cut(s) 158, 593, 772
NaeI GCCGGC 1 cut(s) 852
NciI CCSGG 1 cut(s) 202
NdeII GATC 5 cut(s) 6, 163, 183, 494, 855
NgoMIV GCCGGC 1 cut(s) 850
NlaIV GGNNCC 1 cut(s) 843
NspI RCATGY 1 cut(s) 403
PagI TCATGA 2 cut(s) 472, 598
PauI GCGCGC 1 cut(s) 374
PciSI GCTCTTC 1 cut(s) 765
PdiI GCCGGC 1 cut(s) 852
PdmI GAANNNNTTC 1 cut(s) 820
PfeI GAWTC 3 cut(s) 254, 361, 385
PkrI GCNGC 4 cut(s) 227, 519, 589, 750
PleI GAGTC 1 cut(s) 186
PpsI GAGTC 1 cut(s) 186
PshAI GACNNNNGTC 1 cut(s) 196
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
PspN4I GGNNCC 1 cut(s) 843
PspPI GGNCC 1 cut(s) 88
PsuI RGATCY 2 cut(s) 6, 494
PteI GCGCGC 1 cut(s) 374
RsaI GTAC 1 cut(s) 102
RsaNI GTAC 1 cut(s) 101
RseI CAYNNNNRTG 3 cut(s) 215, 756, 759
SalI GTCGAC 1 cut(s) 230
SapI GCTCTTC 1 cut(s) 765
SatI GCNGC 4 cut(s) 226, 518, 588, 749
Sau3AI GATC 5 cut(s) 6, 163, 183, 494, 855
Sau96I GGNCC 1 cut(s) 88
SchI GAGTC 1 cut(s) 186
ScrFI CCNGG 2 cut(s) 189, 202
SetI ASST 9 cut(s) 227, 237, 351, 443, 465, 515, 522, 647, 823
SfaNI GCATC 3 cut(s) 357, 478, 574
SgrDI CGTCGACG 1 cut(s) 230
SinI GGWCC 1 cut(s) 88
SmiMI CAYNNNNRTG 3 cut(s) 215, 756, 759
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 2 cut(s) 777, 799
SsiI CCGC 2 cut(s) 150, 587
StyD4I CCNGG 2 cut(s) 187, 200
TaaI ACNGT 1 cut(s) 809
TaiI ACGT 1 cut(s) 237
TaqI TCGA 2 cut(s) 231, 782
TaqII GACCGA 1 cut(s) 446
TasI AATT 2 cut(s) 777, 799
TauI GCSGC 1 cut(s) 590
TfiI GAWTC 3 cut(s) 254, 361, 385
TscAI CASTG 3 cut(s) 266, 814, 852
TseI GCWGC 3 cut(s) 225, 517, 748
TspDTI ATGAA 7 cut(s) 62, 261, 267, 350, 639, 735, 857
TspGWI ACGGA 3 cut(s) 395, 669, 816
TspRI CASTG 3 cut(s) 266, 814, 852
VpaK11BI GGWCC 1 cut(s) 88
XceI RCATGY 1 cut(s) 403
XmiI GTMKAC 1 cut(s) 231
XmnI GAANNNNTTC 1 cut(s) 820
ZraI GACGTC 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.