Rorug04G0113200

mRNA-binding protein involved in proper cytoplasmic distribution of mitochondria

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0002468
Physical Location & Seq
Forward (+)
17822292 .. 17824036
1745 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0113200.1

Sequence Viewer

Length: 393 bp
ATGGATGCGAGCGGCATGCGATTCAGTGAACCGAATTACCATGGTTGGTCTGTAGATGAGGATGACTTTTCAGATGAGTACGAAGAGTTATTCTCGGATGAGGAAGCTTCGCAGAGTGCAAATATGGATGAGAATCTGGATTGTCTACACTTCAATGGCAAGAAGTATGAAGATCTCCAATCCTCTGATATGATTGGTGTTGAGTTTAGCAGCGTTAAGGCAGTGGACACATTCTATGCTTACTATTCACTTGCCATGGGCTTCAGTTTCCGAAAGGAAAAGTTGTGTCGAAATGCAGCACAAGTGAATGAAGCATCAGTATTTATTTTTATCTGGGAAGGCAAAGGAGGGGACCATTTTGGTTTGGGAGGGGGACGCAAAGACACTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLU CLU_N DUF727 TPR_10 TPR_12 eIF3_p135

Protein Analysis

130

Amino Acids

14.71

Weight (kDa)

4.33

Isoelectric Point (pI)

32.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 12
AccI GTMKAC 1 cut(s) 145
AciI CCGC 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 247
AfaI GTAC 1 cut(s) 80
AgsI TTSAA 1 cut(s) 154
AluBI AGCT 1 cut(s) 107
AluI AGCT 1 cut(s) 107
ApeKI GCWGC 2 cut(s) 210, 296
AspS9I GGNCC 1 cut(s) 352
AvaII GGWCC 1 cut(s) 352
BbvI GCAGC 2 cut(s) 222, 308
BcgI CGANNNNNNTGC 1 cut(s) 32
BfmI CTRYAG 1 cut(s) 51
BglII AGATCT 1 cut(s) 172
BisI GCNGC 3 cut(s) 13, 211, 297
BlsI GCNGC 3 cut(s) 14, 212, 298
Bme18I GGWCC 1 cut(s) 352
BmgT120I GGNCC 1 cut(s) 352
BmiI GGNNCC 1 cut(s) 353
BmsI GCATC 1 cut(s) 323
BplI GAGNNNNNCTC 2 cut(s) 77, 109
BsaBI GATNNNNATC 1 cut(s) 132
BsaJI CCNNGG 2 cut(s) 40, 255
Bse8I GATNNNNATC 1 cut(s) 132
BseDI CCNNGG 2 cut(s) 40, 255
BseGI GGATG 4 cut(s) 10, 67, 103, 133
BseJI GATNNNNATC 1 cut(s) 132
BseXI GCAGC 2 cut(s) 222, 308
BslFI GGGAC 2 cut(s) 365, 387
BsmFI GGGAC 2 cut(s) 365, 387
Bsp143I GATC 1 cut(s) 172
Bsp19I CCATGG 2 cut(s) 40, 255
BspACI CCGC 1 cut(s) 12
BspLI GGNNCC 1 cut(s) 353
BsrBI CCGCTC 1 cut(s) 12
BssECI CCNNGG 2 cut(s) 40, 255
BssMI GATC 1 cut(s) 172
BssT1I CCWWGG 2 cut(s) 40, 255
Bst6I CTCTTC 1 cut(s) 78
BstC8I GCNNGC 2 cut(s) 10, 17
BstDSI CCRYGG 2 cut(s) 40, 255
BstF5I GGATG 4 cut(s) 10, 67, 103, 133
BstKTI GATC 1 cut(s) 175
BstMBI GATC 1 cut(s) 172
BstNSI RCATGY 1 cut(s) 19
BstSFI CTRYAG 1 cut(s) 51
BstV1I GCAGC 2 cut(s) 222, 308
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
BtgI CCRYGG 2 cut(s) 40, 255
BtsCI GGATG 4 cut(s) 10, 67, 103, 133
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 2 cut(s) 31, 228
Cac8I GCNNGC 2 cut(s) 10, 17
Cfr13I GGNCC 1 cut(s) 352
CseI GACGC 1 cut(s) 384
Csp6I GTAC 1 cut(s) 79
CviAII CATG 3 cut(s) 16, 41, 256
CviJI RGCY 2 cut(s) 107, 261
CviKI_1 RGCY 2 cut(s) 107, 261
CviQI GTAC 1 cut(s) 79
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Eco130I CCWWGG 2 cut(s) 40, 255
Eco47I GGWCC 1 cut(s) 352
Eco57I CTGAAG 1 cut(s) 247
EcoT14I CCWWGG 2 cut(s) 40, 255
ErhI CCWWGG 2 cut(s) 40, 255
FaeI CATG 3 cut(s) 19, 44, 259
FaiI YATR 7 cut(s) 17, 42, 125, 168, 191, 237, 257
FaqI GGGAC 2 cut(s) 365, 387
FatI CATG 3 cut(s) 15, 40, 255
FblI GTMKAC 1 cut(s) 145
Fnu4HI GCNGC 3 cut(s) 13, 211, 297
FokI GGATG 4 cut(s) 17, 74, 110, 140
Fsp4HI GCNGC 3 cut(s) 13, 211, 297
GluI GCNGC 3 cut(s) 13, 211, 297
HgaI GACGC 1 cut(s) 384
Hin1II CATG 3 cut(s) 19, 44, 259
HindIII AAGCTT 1 cut(s) 105
HinfI GANTC 2 cut(s) 21, 133
Hpy166II GTNNAC 3 cut(s) 29, 146, 226
Hpy188I TCNGA 4 cut(s) 73, 97, 187, 272
Hpy188III TCNNGA 1 cut(s) 137
Hpy8I GTNNAC 3 cut(s) 29, 146, 226
HpyAV CCTTC 1 cut(s) 332
HpyCH4V TGCA 2 cut(s) 119, 296
Hsp92II CATG 3 cut(s) 19, 44, 259
Kzo9I GATC 1 cut(s) 172
LpnPI CCDG 2 cut(s) 122, 319
Lsp1109I GCAGC 2 cut(s) 222, 308
LweI GCATC 1 cut(s) 323
MalI GATC 1 cut(s) 174
MbiI CCGCTC 1 cut(s) 12
MboI GATC 1 cut(s) 172
MboII GAAGA 2 cut(s) 95, 182
MflI RGATCY 1 cut(s) 172
MluCI AATT 1 cut(s) 34
MnlI CCTC 5 cut(s) 52, 94, 193, 341, 362
MseI TTAA 1 cut(s) 216
MslI CAYNNNNRTG 1 cut(s) 153
NcoI CCATGG 2 cut(s) 40, 255
NdeII GATC 1 cut(s) 172
NlaIII CATG 3 cut(s) 19, 44, 259
NlaIV GGNNCC 1 cut(s) 353
NspI RCATGY 1 cut(s) 19
PaeI GCATGC 1 cut(s) 19
PfeI GAWTC 2 cut(s) 21, 133
PkrI GCNGC 3 cut(s) 14, 212, 298
PspN4I GGNNCC 1 cut(s) 353
PspPI GGNCC 1 cut(s) 352
PsuI RGATCY 1 cut(s) 172
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
RseI CAYNNNNRTG 1 cut(s) 153
SaqAI TTAA 1 cut(s) 216
SatI GCNGC 3 cut(s) 13, 211, 297
Sau3AI GATC 1 cut(s) 172
Sau96I GGNCC 1 cut(s) 352
SetI ASST 1 cut(s) 109
SfaNI GCATC 1 cut(s) 323
SfcI CTRYAG 1 cut(s) 51
SinI GGWCC 1 cut(s) 352
SmiMI CAYNNNNRTG 1 cut(s) 153
SphI GCATGC 1 cut(s) 19
Sse9I AATT 1 cut(s) 34
SsiI CCGC 1 cut(s) 12
StyI CCWWGG 2 cut(s) 40, 255
TaqI TCGA 1 cut(s) 289
TasI AATT 1 cut(s) 34
TauI GCSGC 1 cut(s) 15
TfiI GAWTC 2 cut(s) 21, 133
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TscAI CASTG 2 cut(s) 31, 228
TseI GCWGC 2 cut(s) 210, 296
TspDTI ATGAA 2 cut(s) 183, 324
TspRI CASTG 2 cut(s) 31, 228
VpaK11BI GGWCC 1 cut(s) 352
XceI RCATGY 1 cut(s) 19
XmiI GTMKAC 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.