Rw7G040820

Fantastic Four meristem regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0002468
Physical Location & Seq
Forward (+)
63677944 .. 63679000
1057 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G040820.1

Sequence Viewer

Length: 1002 bp
ATGGATTTCACGATTGGAAGGTTATTTATCTGCACTGCTTATAAATCCATAATTTCCTCTCTCTTTATGTTGCGGGGTTCGAGGTCAACATGCCCCATGCAAACCCCAAAAGATTCGACGCATCAAAACCTCAAGTTGGGTCTCAAAACCCTAATTTTCAACCCTAAATCCCATAATCACCGCCACATCGTTCACAAGAACTACAAGCTCGCGCCACCATCGCCATCTTCGCAGTCTTCACTCACTTATTCGTGGTCGTTATTGGATAACTCATCGTCGTGGACATCGTCTATGTTGGACGACTTGCTCGGAACAGACAGTGGCGTGGCCTACATGACAACCTCAAAAGACGATATCTTAATGTCAATGACGACCAGTACTGCTCGCAGTTACCCCAAGAAGAAAAGTACTCGAGGAAGCGGAAGGGTGAAAAGGGAATTTCCACCACCAATACCGCTTCTGGCACAAACGGGGAATTTGCAATGTCGCATGCCTTGGAATCTGACTAAGCATTATTCTAATGGAAGGCTAGTTTTGAAAGGAGAGAAAGCACAGCACCATGAGTACTTCGAAGCCGAACGTGACAGCGGCCGCCTTGTGTTGAAGCTTGTGCCTCTGGACAGCACCATACTAACGACTTATGATGTGCCTGAATCGTCCGGTGGACATTTGGACGTGTGTGAGGAAAACGATGAAGAGCTTGAAATGGAAAACGTGCAGTTTACAAAAGAAGACTACGCTGAGGATGAGAATGATGATGCTGATGATGACGAAGATGATGATGATGATGAATGTGACAACAATGTGGATGAGAGTAAAACTATGTTGGTTTGCAATTCGGTCCCTCAGTCACACTCGGAGATCAGCAGGTGTGATGAGAAATATGGAAATCTGCCGATGTTTTTCACGAAGTCAGCTGCAAGTGTCCATGAACAACCGCAAAACTACTTTGCACAACCTGCTTCAGCTCCTCTTCGTCCAATGACTGCTGTGAAGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

333

Amino Acids

37.47

Weight (kDa)

5.24

Isoelectric Point (pI)

53.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 146 - 203 8.8e-15 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 42
AarI CACCTGC 1 cut(s) 858
Acc36I ACCTGC 2 cut(s) 858, 967
AccII CGCG 1 cut(s) 212
AciI CCGC 7 cut(s) 73, 181, 420, 455, 588, 592, 938
AcoI YGGCCR 1 cut(s) 589
AcsI RAATTY 2 cut(s) 437, 475
AcuI CTGAAG 1 cut(s) 948
AfaI GTAC 3 cut(s) 379, 409, 566
AfiI CCNNNNNNNGG 1 cut(s) 136
AflIII ACRYGT 1 cut(s) 675
AgsI TTSAA 4 cut(s) 160, 538, 604, 704
AjiI CACGTC 1 cut(s) 676
AluBI AGCT 5 cut(s) 208, 607, 700, 917, 968
AluI AGCT 5 cut(s) 208, 607, 700, 917, 968
Alw26I GTCTC 1 cut(s) 146
Ama87I CYCGRG 1 cut(s) 411
AoxI GGCC 2 cut(s) 327, 589
ApeKI GCWGC 1 cut(s) 917
ApoI RAATTY 2 cut(s) 437, 475
AspLEI GCGC 1 cut(s) 214
AspS9I GGNCC 1 cut(s) 841
AsuHPI GGTGA 2 cut(s) 170, 439
AsuII TTCGAA 1 cut(s) 570
AvaI CYCGRG 1 cut(s) 411
AvaII GGWCC 1 cut(s) 841
BbsI GAAGAC 2 cut(s) 228, 738
BbvCI CCTCAGC 1 cut(s) 741
BbvI GCAGC 1 cut(s) 904
BccI CCATC 2 cut(s) 226, 232
BcoDI GTCTC 1 cut(s) 146
BfaI CTAG 1 cut(s) 530
BfuAI ACCTGC 2 cut(s) 858, 967
BisI GCNGC 3 cut(s) 589, 592, 918
BlsI GCNGC 3 cut(s) 590, 593, 919
BmcAI AGTACT 3 cut(s) 379, 409, 566
Bme18I GGWCC 1 cut(s) 841
BmeT110I CYCGRG 1 cut(s) 411
BmgBI CACGTC 1 cut(s) 676
BmgT120I GGNCC 1 cut(s) 841
BmiI GGNNCC 1 cut(s) 843
BmsI GCATC 2 cut(s) 130, 748
BpiI GAAGAC 2 cut(s) 228, 738
Bpu10I CCTNAGC 1 cut(s) 741
Bpu14I TTCGAA 1 cut(s) 570
BpuEI CTTGAG 1 cut(s) 116
BsaI GGTCTC 1 cut(s) 146
BsaJI CCNNGG 1 cut(s) 494
BsaWI WCCGGW 1 cut(s) 659
Bsc4I CCNNNNNNNGG 1 cut(s) 136
Bse1I ACTGG 1 cut(s) 375
Bse3DI GCAATG 1 cut(s) 488
BseDI CCNNGG 1 cut(s) 494
BseGI GGATG 2 cut(s) 751, 814
BseLI CCNNNNNNNGG 1 cut(s) 136
BseMI GCAATG 1 cut(s) 488
BseMII CTCAG 2 cut(s) 732, 860
BseNI ACTGG 1 cut(s) 375
BseRI GAGGAG 1 cut(s) 960
BseX3I CGGCCG 1 cut(s) 589
BseXI GCAGC 1 cut(s) 904
BsgI GTGCAG 2 cut(s) 16, 737
Bsh1236I CGCG 1 cut(s) 212
Bsh1285I CGRYCG 1 cut(s) 592
BshFI GGCC 2 cut(s) 329, 591
BsiEI CGRYCG 1 cut(s) 592
BsiHKCI CYCGRG 1 cut(s) 411
BsiSI CCGG 1 cut(s) 660
BslFI GGGAC 1 cut(s) 827
BslI CCNNNNNNNGG 1 cut(s) 136
BsmAI GTCTC 1 cut(s) 146
BsmFI GGGAC 1 cut(s) 827
BsnI GGCC 2 cut(s) 329, 591
Bso31I GGTCTC 1 cut(s) 146
BsoBI CYCGRG 1 cut(s) 411
Bsp119I TTCGAA 1 cut(s) 570
Bsp143I GATC 1 cut(s) 861
BspACI CCGC 7 cut(s) 73, 181, 420, 455, 588, 592, 938
BspANI GGCC 2 cut(s) 329, 591
BspCNI CTCAG 2 cut(s) 733, 859
BspFNI CGCG 1 cut(s) 212
BspLI GGNNCC 1 cut(s) 843
BspMI ACCTGC 2 cut(s) 858, 967
BspQI GCTCTTC 1 cut(s) 690
BspT104I TTCGAA 1 cut(s) 570
BspTNI GGTCTC 1 cut(s) 146
BsrDI GCAATG 1 cut(s) 488
BsrI ACTGG 1 cut(s) 375
BssECI CCNNGG 1 cut(s) 494
BssMI GATC 1 cut(s) 861
BssT1I CCWWGG 1 cut(s) 494
Bst4CI ACNGT 1 cut(s) 320
Bst6I CTCTTC 2 cut(s) 690, 978
BstAPI GCANNNNNTGC 1 cut(s) 959
BstBI TTCGAA 1 cut(s) 570
BstC8I GCNNGC 3 cut(s) 210, 385, 491
BstDEI CTNAG 3 cut(s) 507, 741, 846
BstF5I GGATG 2 cut(s) 751, 814
BstFNI CGCG 1 cut(s) 212
BstHHI GCGC 1 cut(s) 214
BstKTI GATC 1 cut(s) 864
BstMAI GTCTC 1 cut(s) 146
BstMBI GATC 1 cut(s) 861
BstMCI CGRYCG 1 cut(s) 592
BstMWI GCNNNNNNNGC 3 cut(s) 220, 229, 959
BstNSI RCATGY 2 cut(s) 93, 493
BstUI CGCG 1 cut(s) 212
BstV1I GCAGC 1 cut(s) 904
BstV2I GAAGAC 2 cut(s) 228, 738
BstZI CGGCCG 1 cut(s) 589
BsuRI GGCC 2 cut(s) 329, 591
BtgZI GCGATG 1 cut(s) 204
BtrI CACGTC 1 cut(s) 676
BtsCI GGATG 2 cut(s) 751, 814
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 2 cut(s) 33, 325
BveI ACCTGC 2 cut(s) 858, 967
Cac8I GCNNGC 3 cut(s) 210, 385, 491
CciNI GCGGCCGC 1 cut(s) 589
CfoI GCGC 1 cut(s) 214
Cfr13I GGNCC 1 cut(s) 841
CseI GACGC 1 cut(s) 127
Csp6I GTAC 3 cut(s) 378, 408, 565
CviAII CATG 6 cut(s) 90, 97, 334, 490, 560, 929
CviJI RGCY 9 cut(s) 208, 329, 529, 575, 591, 607, 700, 917, 968
CviKI_1 RGCY 9 cut(s) 208, 329, 529, 575, 591, 607, 700, 917, 968
CviQI GTAC 3 cut(s) 378, 408, 565
DdeI CTNAG 3 cut(s) 507, 741, 846
DpnI GATC 1 cut(s) 863
DpnII GATC 1 cut(s) 861
EaeI YGGCCR 1 cut(s) 589
EagI CGGCCG 1 cut(s) 589
Eam1104I CTCTTC 2 cut(s) 690, 978
EarI CTCTTC 2 cut(s) 690, 978
EclXI CGGCCG 1 cut(s) 589
Eco130I CCWWGG 1 cut(s) 494
Eco31I GGTCTC 1 cut(s) 146
Eco32I GATATC 1 cut(s) 355
Eco47I GGWCC 1 cut(s) 841
Eco52I CGGCCG 1 cut(s) 589
Eco57I CTGAAG 1 cut(s) 948
Eco88I CYCGRG 1 cut(s) 411
EcoRV GATATC 1 cut(s) 355
EcoT14I CCWWGG 1 cut(s) 494
ErhI CCWWGG 1 cut(s) 494
FaeI CATG 6 cut(s) 93, 100, 337, 493, 563, 932
FaqI GGGAC 1 cut(s) 827
FatI CATG 6 cut(s) 89, 96, 333, 489, 559, 928
FauI CCCGC 1 cut(s) 66
Fnu4HI GCNGC 3 cut(s) 589, 592, 918
FokI GGATG 2 cut(s) 758, 821
Fsp4HI GCNGC 3 cut(s) 589, 592, 918
FspBI CTAG 1 cut(s) 530
GlaI GCGC 1 cut(s) 213
GluI GCNGC 3 cut(s) 589, 592, 918
HaeIII GGCC 2 cut(s) 329, 591
HapII CCGG 1 cut(s) 660
HgaI GACGC 1 cut(s) 127
HhaI GCGC 1 cut(s) 214
Hin1II CATG 6 cut(s) 93, 100, 337, 493, 563, 932
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HincII GTYRAC 1 cut(s) 87
HindII GTYRAC 1 cut(s) 87
HindIII AAGCTT 1 cut(s) 605
HinfI GANTC 3 cut(s) 113, 499, 653
HpaII CCGG 1 cut(s) 660
HphI GGTGA 2 cut(s) 170, 439
Hpy166II GTNNAC 5 cut(s) 87, 193, 282, 665, 723
Hpy188I TCNGA 3 cut(s) 311, 504, 859
Hpy188III TCNNGA 3 cut(s) 10, 617, 907
Hpy8I GTNNAC 5 cut(s) 87, 193, 282, 665, 723
Hpy99I CGWCG 2 cut(s) 121, 280
HpyAV CCTTC 3 cut(s) 12, 417, 519
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4IV ACGT 3 cut(s) 580, 675, 714
HpyCH4V TGCA 7 cut(s) 33, 100, 481, 718, 834, 920, 953
HpyF10VI GCNNNNNNNGC 3 cut(s) 220, 229, 959
HpyF3I CTNAG 3 cut(s) 507, 741, 846
HpySE526I ACGT 3 cut(s) 580, 675, 714
Hsp92II CATG 6 cut(s) 93, 100, 337, 493, 563, 932
HspAI GCGC 1 cut(s) 212
Kzo9I GATC 1 cut(s) 861
LguI GCTCTTC 1 cut(s) 690
LmnI GCTCC 1 cut(s) 973
LpnPI CCDG 7 cut(s) 388, 446, 602, 663, 673, 853, 972
Lsp1109I GCAGC 1 cut(s) 904
LweI GCATC 2 cut(s) 130, 748
MaeI CTAG 1 cut(s) 530
MaeII ACGT 3 cut(s) 580, 675, 714
MaeIII GTNAC 4 cut(s) 389, 581, 794, 849
MalI GATC 1 cut(s) 863
MboI GATC 1 cut(s) 861
MboII GAAGA 7 cut(s) 219, 228, 412, 707, 743, 785, 965
MluCI AATT 6 cut(s) 51, 153, 437, 475, 835, 997
MmeI TCCRAC 1 cut(s) 276
MseI TTAA 1 cut(s) 359
MslI CAYNNNNRTG 1 cut(s) 277
MspA1I CMGCKG 2 cut(s) 588, 917
MspI CCGG 1 cut(s) 660
MvnI CGCG 1 cut(s) 212
MwoI GCNNNNNNNGC 3 cut(s) 220, 229, 959
NdeII GATC 1 cut(s) 861
NlaIII CATG 6 cut(s) 93, 100, 337, 493, 563, 932
NlaIV GGNNCC 1 cut(s) 843
NmuCI GTSAC 3 cut(s) 581, 794, 849
NotI GCGGCCGC 1 cut(s) 589
NspI RCATGY 2 cut(s) 93, 493
NspV TTCGAA 1 cut(s) 570
PaeI GCATGC 1 cut(s) 493
PaeR7I CTCGAG 1 cut(s) 411
PaqCI CACCTGC 1 cut(s) 858
PciSI GCTCTTC 1 cut(s) 690
PcsI WCGNNNNNNNCGW 1 cut(s) 284
PfeI GAWTC 3 cut(s) 113, 499, 653
PflFI GACNNNGTC 1 cut(s) 286
PkrI GCNGC 3 cut(s) 590, 593, 919
PsiI TTATAA 1 cut(s) 42
PspN4I GGNNCC 1 cut(s) 843
PspPI GGNCC 1 cut(s) 841
PspXI VCTCGAGB 1 cut(s) 411
PsyI GACNNNGTC 1 cut(s) 286
PvuII CAGCTG 1 cut(s) 917
RsaI GTAC 3 cut(s) 379, 409, 566
RsaNI GTAC 3 cut(s) 378, 408, 565
RseI CAYNNNNRTG 1 cut(s) 277
SapI GCTCTTC 1 cut(s) 690
SaqAI TTAA 1 cut(s) 359
SatI GCNGC 3 cut(s) 589, 592, 918
Sau3AI GATC 1 cut(s) 861
Sau96I GGNCC 1 cut(s) 841
ScaI AGTACT 3 cut(s) 379, 409, 566
SfaNI GCATC 2 cut(s) 130, 748
Sfr274I CTCGAG 1 cut(s) 411
SfuI TTCGAA 1 cut(s) 570
SinI GGWCC 1 cut(s) 841
SlaI CTCGAG 1 cut(s) 411
SmiMI CAYNNNNRTG 1 cut(s) 277
SmlI CTYRAG 2 cut(s) 131, 411
SmoI CTYRAG 2 cut(s) 131, 411
SphI GCATGC 1 cut(s) 493
Sse9I AATT 6 cut(s) 51, 153, 437, 475, 835, 997
SsiI CCGC 7 cut(s) 73, 181, 420, 455, 588, 592, 938
SspMI CTAG 1 cut(s) 530
StyI CCWWGG 1 cut(s) 494
TaaI ACNGT 1 cut(s) 320
TaiI ACGT 3 cut(s) 583, 678, 717
TaqI TCGA 4 cut(s) 80, 116, 412, 570
TaqII GACCGA 1 cut(s) 829
TasI AATT 6 cut(s) 51, 153, 437, 475, 835, 997
TatI WGTACW 3 cut(s) 377, 407, 564
TauI GCSGC 2 cut(s) 591, 594
TfiI GAWTC 3 cut(s) 113, 499, 653
Tru1I TTAA 1 cut(s) 359
Tru9I TTAA 1 cut(s) 359
TscAI CASTG 2 cut(s) 40, 325
TseFI GTSAC 3 cut(s) 581, 794, 849
TseI GCWGC 1 cut(s) 917
Tsp45I GTSAC 3 cut(s) 581, 794, 849
TspDTI ATGAA 3 cut(s) 708, 804, 945
TspRI CASTG 2 cut(s) 40, 325
Tth111I GACNNNGTC 1 cut(s) 286
VpaK11BI GGWCC 1 cut(s) 841
XapI RAATTY 2 cut(s) 437, 475
XceI RCATGY 2 cut(s) 93, 493
XhoI CTCGAG 1 cut(s) 411
XspI CTAG 1 cut(s) 530
ZrmI AGTACT 3 cut(s) 379, 409, 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.