Rh7AG487200

Fantastic Four meristem regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0002468
Physical Location & Seq
Forward (+)
68727799 .. 68733648
5850 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG487200.1

Sequence Viewer

Length: 1056 bp
ATGAAACGGTGCAGTGAAAGCAGACAAAATATAGCTGTTAAGAGGTCAAATCACACCATGGATTTCACGATTGGAAGGTTATTTATCTGCACTGCTTATAAATCCATAATTTCCTCTCTCTTTATGTTGCGGGGTTCGAGGTCAACATGCCCCATGCAAACCCCAAAAGATTCGACGCATCAAAACCTCAAGTTGGGTCTCAAAACCCTAATTTTCAACCCTAAATCCCATAATCACCGCCACATCGTTCACAAGAACTACAAGCTCGCGCCACCATCGCCATCTTCGCAGTCTTCACTCACTTATTCGTGGTCGTTATTGGATAACTCATCGTCGTGGACATCGTCTATGTTGGACGACTTGCTCGGAACAGACAGTGGCGTCGCCTACATGACAACCTCAAACGACGATATCTTAATGTCAATGACGACCAGTACTGCTCGCAGTTACCCCAAGAAGAAAAGTACTCGAGGAAGCGGAAGGGTGAAAAGGGAATTTCCACCACCAATACCGCTTCTGGCACAAACGGGGAATTTGCAATGTCGCATGCCTTGGAATCTGACTAAGCATTATTCTAATGGAAGGCTAGTTTTGAAAGGAGAGAAAGCACAGCACCATGAGTACTTCGAAGCCGAACGTGACAGCGGCCGCCTTGTGTTGAAGCTTGTGCCTCTGGACAGCACCATACTAACGACTTGTGATGTGCCTGCATCGTCCGGTGGACATTTGGACGCGTGTGAGGAAAACGATGAAGAGCTTGAAATGGAAAACGTGCAGTTTGCTGAAGAAGACTATGCTGAGGATGAGAATGATGATGCTGATGATGACGAAGATGATGATGATGAATGTGACAACAATGTGGATGAGAGTAAAACTACGTTGGTTTGCAATTCGGTCCCTCAGTCACACTCGGAGATCAGCAGGTGTGATGAGAAATATGGAAATCTGCCGATGTATTTCACGAAGTCAGCTGCAAGTGTCCATGAACAACCGCAAAACTACTTTGCACACCCTGCTTCAGCTCCTCTTCGTCCAATGACTGCTGTGAAGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

351

Amino Acids

39.38

Weight (kDa)

5.63

Isoelectric Point (pI)

58.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 165 - 222 9.6e-15 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 99
AarI CACCTGC 1 cut(s) 912
AasI GACNNNNNNGTC 1 cut(s) 380
Acc36I ACCTGC 1 cut(s) 912
AccII CGCG 2 cut(s) 269, 734
AciI CCGC 7 cut(s) 130, 238, 477, 512, 645, 649, 992
AcoI YGGCCR 1 cut(s) 646
AcsI RAATTY 2 cut(s) 494, 532
AcuI CTGAAG 2 cut(s) 804, 1002
AcyI GRCGYC 1 cut(s) 381
AfaI GTAC 3 cut(s) 436, 466, 623
AfiI CCNNNNNNNGG 1 cut(s) 193
AflIII ACRYGT 1 cut(s) 732
AgsI TTSAA 4 cut(s) 217, 595, 661, 761
AluBI AGCT 6 cut(s) 35, 265, 664, 757, 971, 1022
AluI AGCT 6 cut(s) 35, 265, 664, 757, 971, 1022
Alw26I GTCTC 1 cut(s) 203
Ama87I CYCGRG 1 cut(s) 468
AoxI GGCC 1 cut(s) 646
ApeKI GCWGC 1 cut(s) 971
ApoI RAATTY 2 cut(s) 494, 532
AspLEI GCGC 1 cut(s) 271
AspS9I GGNCC 1 cut(s) 895
AsuHPI GGTGA 2 cut(s) 227, 496
AsuII TTCGAA 1 cut(s) 627
AvaI CYCGRG 1 cut(s) 468
AvaII GGWCC 1 cut(s) 895
BbsI GAAGAC 2 cut(s) 285, 795
BbvCI CCTCAGC 1 cut(s) 798
BbvI GCAGC 1 cut(s) 958
BccI CCATC 2 cut(s) 283, 289
BcoDI GTCTC 1 cut(s) 203
BfaI CTAG 1 cut(s) 587
BfuAI ACCTGC 1 cut(s) 912
BisI GCNGC 3 cut(s) 646, 649, 972
BlsI GCNGC 3 cut(s) 647, 650, 973
BmcAI AGTACT 3 cut(s) 436, 466, 623
Bme18I GGWCC 1 cut(s) 895
BmeT110I CYCGRG 1 cut(s) 468
BmgT120I GGNCC 1 cut(s) 895
BmiI GGNNCC 1 cut(s) 897
BmsI GCATC 3 cut(s) 187, 719, 805
BpiI GAAGAC 2 cut(s) 285, 795
Bpu10I CCTNAGC 1 cut(s) 798
Bpu14I TTCGAA 1 cut(s) 627
BpuEI CTTGAG 1 cut(s) 173
BsaHI GRCGYC 1 cut(s) 381
BsaI GGTCTC 1 cut(s) 203
BsaJI CCNNGG 2 cut(s) 57, 551
BsaWI WCCGGW 1 cut(s) 716
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse1I ACTGG 1 cut(s) 432
Bse3DI GCAATG 1 cut(s) 545
BseDI CCNNGG 2 cut(s) 57, 551
BseGI GGATG 2 cut(s) 808, 868
BseLI CCNNNNNNNGG 1 cut(s) 193
BseMI GCAATG 1 cut(s) 545
BseMII CTCAG 2 cut(s) 789, 914
BseNI ACTGG 1 cut(s) 432
BseRI GAGGAG 1 cut(s) 1014
BseX3I CGGCCG 1 cut(s) 646
BseXI GCAGC 1 cut(s) 958
BsgI GTGCAG 3 cut(s) 31, 73, 794
Bsh1236I CGCG 2 cut(s) 269, 734
Bsh1285I CGRYCG 1 cut(s) 649
BshFI GGCC 1 cut(s) 648
BsiEI CGRYCG 1 cut(s) 649
BsiHKCI CYCGRG 1 cut(s) 468
BsiSI CCGG 1 cut(s) 717
BslFI GGGAC 1 cut(s) 881
BslI CCNNNNNNNGG 1 cut(s) 193
BsmAI GTCTC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 881
BsnI GGCC 1 cut(s) 648
Bso31I GGTCTC 1 cut(s) 203
BsoBI CYCGRG 1 cut(s) 468
Bsp119I TTCGAA 1 cut(s) 627
Bsp143I GATC 1 cut(s) 915
Bsp19I CCATGG 1 cut(s) 57
BspACI CCGC 7 cut(s) 130, 238, 477, 512, 645, 649, 992
BspANI GGCC 1 cut(s) 648
BspCNI CTCAG 2 cut(s) 790, 913
BspFNI CGCG 2 cut(s) 269, 734
BspLI GGNNCC 1 cut(s) 897
BspMI ACCTGC 1 cut(s) 912
BspQI GCTCTTC 1 cut(s) 747
BspT104I TTCGAA 1 cut(s) 627
BspTNI GGTCTC 1 cut(s) 203
BsrDI GCAATG 1 cut(s) 545
BsrI ACTGG 1 cut(s) 432
BssECI CCNNGG 2 cut(s) 57, 551
BssMI GATC 1 cut(s) 915
BssNI GRCGYC 1 cut(s) 381
BssT1I CCWWGG 2 cut(s) 57, 551
Bst4CI ACNGT 2 cut(s) 9, 377
Bst6I CTCTTC 2 cut(s) 747, 1032
BstACI GRCGYC 1 cut(s) 381
BstAPI GCANNNNNTGC 1 cut(s) 1013
BstBI TTCGAA 1 cut(s) 627
BstC8I GCNNGC 4 cut(s) 267, 442, 548, 708
BstDEI CTNAG 3 cut(s) 564, 798, 900
BstDSI CCRYGG 1 cut(s) 57
BstF5I GGATG 2 cut(s) 808, 868
BstFNI CGCG 2 cut(s) 269, 734
BstHHI GCGC 1 cut(s) 271
BstKTI GATC 1 cut(s) 918
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 1 cut(s) 915
BstMCI CGRYCG 1 cut(s) 649
BstMWI GCNNNNNNNGC 4 cut(s) 18, 277, 286, 1013
BstNSI RCATGY 2 cut(s) 150, 550
BstUI CGCG 2 cut(s) 269, 734
BstV1I GCAGC 1 cut(s) 958
BstV2I GAAGAC 2 cut(s) 285, 795
BstZI CGGCCG 1 cut(s) 646
BsuRI GGCC 1 cut(s) 648
BtgI CCRYGG 1 cut(s) 57
BtgZI GCGATG 1 cut(s) 261
BtsCI GGATG 2 cut(s) 808, 868
BtsI GCAGTG 2 cut(s) 19, 90
BtsIMutI CAGTG 3 cut(s) 19, 90, 382
BveI ACCTGC 1 cut(s) 912
Cac8I GCNNGC 4 cut(s) 267, 442, 548, 708
CciNI GCGGCCGC 1 cut(s) 646
CfoI GCGC 1 cut(s) 271
Cfr13I GGNCC 1 cut(s) 895
CseI GACGC 3 cut(s) 184, 370, 740
Csp6I GTAC 3 cut(s) 435, 465, 622
CviAII CATG 7 cut(s) 58, 147, 154, 391, 547, 617, 983
CviJI RGCY 9 cut(s) 35, 265, 586, 632, 648, 664, 757, 971, 1022
CviKI_1 RGCY 9 cut(s) 35, 265, 586, 632, 648, 664, 757, 971, 1022
CviQI GTAC 3 cut(s) 435, 465, 622
DdeI CTNAG 3 cut(s) 564, 798, 900
DpnI GATC 1 cut(s) 917
DpnII GATC 1 cut(s) 915
DrdI GACNNNNNNGTC 1 cut(s) 380
DseDI GACNNNNNNGTC 1 cut(s) 380
EaeI YGGCCR 1 cut(s) 646
EagI CGGCCG 1 cut(s) 646
Eam1104I CTCTTC 2 cut(s) 747, 1032
EarI CTCTTC 2 cut(s) 747, 1032
EclXI CGGCCG 1 cut(s) 646
Eco130I CCWWGG 2 cut(s) 57, 551
Eco31I GGTCTC 1 cut(s) 203
Eco32I GATATC 1 cut(s) 412
Eco47I GGWCC 1 cut(s) 895
Eco52I CGGCCG 1 cut(s) 646
Eco57I CTGAAG 2 cut(s) 804, 1002
Eco88I CYCGRG 1 cut(s) 468
EcoRV GATATC 1 cut(s) 412
EcoT14I CCWWGG 2 cut(s) 57, 551
ErhI CCWWGG 2 cut(s) 57, 551
FaeI CATG 7 cut(s) 61, 150, 157, 394, 550, 620, 986
FaqI GGGAC 1 cut(s) 881
FatI CATG 7 cut(s) 57, 146, 153, 390, 546, 616, 982
FauI CCCGC 1 cut(s) 123
Fnu4HI GCNGC 3 cut(s) 646, 649, 972
FokI GGATG 2 cut(s) 815, 875
Fsp4HI GCNGC 3 cut(s) 646, 649, 972
FspBI CTAG 1 cut(s) 587
GlaI GCGC 1 cut(s) 270
GluI GCNGC 3 cut(s) 646, 649, 972
HaeIII GGCC 1 cut(s) 648
HapII CCGG 1 cut(s) 717
HgaI GACGC 3 cut(s) 184, 370, 740
HhaI GCGC 1 cut(s) 271
Hin1I GRCGYC 1 cut(s) 381
Hin1II CATG 7 cut(s) 61, 150, 157, 394, 550, 620, 986
Hin6I GCGC 1 cut(s) 269
HinP1I GCGC 1 cut(s) 269
HincII GTYRAC 1 cut(s) 144
HindII GTYRAC 1 cut(s) 144
HindIII AAGCTT 1 cut(s) 662
HinfI GANTC 2 cut(s) 170, 556
HpaII CCGG 1 cut(s) 717
HphI GGTGA 2 cut(s) 227, 496
Hpy166II GTNNAC 4 cut(s) 144, 250, 339, 722
Hpy188I TCNGA 3 cut(s) 368, 561, 913
Hpy188III TCNNGA 3 cut(s) 67, 674, 961
Hpy8I GTNNAC 4 cut(s) 144, 250, 339, 722
Hpy99I CGWCG 4 cut(s) 178, 337, 386, 410
HpyAV CCTTC 3 cut(s) 69, 474, 576
HpyCH4III ACNGT 2 cut(s) 9, 377
HpyCH4IV ACGT 3 cut(s) 637, 771, 878
HpyCH4V TGCA 9 cut(s) 12, 90, 157, 538, 710, 775, 888, 974, 1007
HpyF10VI GCNNNNNNNGC 4 cut(s) 18, 277, 286, 1013
HpyF3I CTNAG 3 cut(s) 564, 798, 900
HpySE526I ACGT 3 cut(s) 637, 771, 878
Hsp92I GRCGYC 1 cut(s) 381
Hsp92II CATG 7 cut(s) 61, 150, 157, 394, 550, 620, 986
HspAI GCGC 1 cut(s) 269
Kzo9I GATC 1 cut(s) 915
LguI GCTCTTC 1 cut(s) 747
LmnI GCTCC 1 cut(s) 1027
LpnPI CCDG 7 cut(s) 445, 503, 659, 720, 730, 907, 1026
Lsp1109I GCAGC 1 cut(s) 958
LweI GCATC 3 cut(s) 187, 719, 805
MaeI CTAG 1 cut(s) 587
MaeII ACGT 3 cut(s) 637, 771, 878
MaeIII GTNAC 4 cut(s) 446, 638, 848, 903
MalI GATC 1 cut(s) 917
MboI GATC 1 cut(s) 915
MboII GAAGA 8 cut(s) 276, 285, 469, 764, 797, 800, 842, 1019
MluCI AATT 6 cut(s) 108, 210, 494, 532, 889, 1051
MluI ACGCGT 1 cut(s) 732
MmeI TCCRAC 1 cut(s) 333
MseI TTAA 2 cut(s) 39, 416
MslI CAYNNNNRTG 1 cut(s) 334
MspA1I CMGCKG 2 cut(s) 645, 971
MspI CCGG 1 cut(s) 717
MvnI CGCG 2 cut(s) 269, 734
MwoI GCNNNNNNNGC 4 cut(s) 18, 277, 286, 1013
NcoI CCATGG 1 cut(s) 57
NdeII GATC 1 cut(s) 915
NlaIII CATG 7 cut(s) 61, 150, 157, 394, 550, 620, 986
NlaIV GGNNCC 1 cut(s) 897
NmuCI GTSAC 3 cut(s) 638, 848, 903
NotI GCGGCCGC 1 cut(s) 646
NspI RCATGY 2 cut(s) 150, 550
NspV TTCGAA 1 cut(s) 627
PaeI GCATGC 1 cut(s) 550
PaeR7I CTCGAG 1 cut(s) 468
PaqCI CACCTGC 1 cut(s) 912
PciSI GCTCTTC 1 cut(s) 747
PcsI WCGNNNNNNNCGW 1 cut(s) 341
PfeI GAWTC 2 cut(s) 170, 556
PflFI GACNNNGTC 1 cut(s) 343
PkrI GCNGC 3 cut(s) 647, 650, 973
PsiI TTATAA 1 cut(s) 99
PspN4I GGNNCC 1 cut(s) 897
PspPI GGNCC 1 cut(s) 895
PspXI VCTCGAGB 1 cut(s) 468
PsyI GACNNNGTC 1 cut(s) 343
PvuII CAGCTG 1 cut(s) 971
RsaI GTAC 3 cut(s) 436, 466, 623
RsaNI GTAC 3 cut(s) 435, 465, 622
RseI CAYNNNNRTG 1 cut(s) 334
SapI GCTCTTC 1 cut(s) 747
SaqAI TTAA 2 cut(s) 39, 416
SatI GCNGC 3 cut(s) 646, 649, 972
Sau3AI GATC 1 cut(s) 915
Sau96I GGNCC 1 cut(s) 895
ScaI AGTACT 3 cut(s) 436, 466, 623
SfaNI GCATC 3 cut(s) 187, 719, 805
Sfr274I CTCGAG 1 cut(s) 468
SfuI TTCGAA 1 cut(s) 627
SinI GGWCC 1 cut(s) 895
SlaI CTCGAG 1 cut(s) 468
SmiMI CAYNNNNRTG 1 cut(s) 334
SmlI CTYRAG 2 cut(s) 188, 468
SmoI CTYRAG 2 cut(s) 188, 468
SphI GCATGC 1 cut(s) 550
Sse9I AATT 6 cut(s) 108, 210, 494, 532, 889, 1051
SsiI CCGC 7 cut(s) 130, 238, 477, 512, 645, 649, 992
SspMI CTAG 1 cut(s) 587
StyI CCWWGG 2 cut(s) 57, 551
TaaI ACNGT 2 cut(s) 9, 377
TaiI ACGT 3 cut(s) 640, 774, 881
TaqI TCGA 4 cut(s) 137, 173, 469, 627
TaqII GACCGA 1 cut(s) 883
TasI AATT 6 cut(s) 108, 210, 494, 532, 889, 1051
TatI WGTACW 3 cut(s) 434, 464, 621
TauI GCSGC 2 cut(s) 648, 651
TfiI GAWTC 2 cut(s) 170, 556
Tru1I TTAA 2 cut(s) 39, 416
Tru9I TTAA 2 cut(s) 39, 416
TscAI CASTG 3 cut(s) 19, 97, 382
TseFI GTSAC 3 cut(s) 638, 848, 903
TseI GCWGC 1 cut(s) 971
Tsp45I GTSAC 3 cut(s) 638, 848, 903
TspDTI ATGAA 4 cut(s) 17, 765, 858, 999
TspRI CASTG 3 cut(s) 19, 97, 382
Tth111I GACNNNGTC 1 cut(s) 343
VpaK11BI GGWCC 1 cut(s) 895
XapI RAATTY 2 cut(s) 494, 532
XceI RCATGY 2 cut(s) 150, 550
XhoI CTCGAG 1 cut(s) 468
XspI CTAG 1 cut(s) 587
ZrmI AGTACT 3 cut(s) 436, 466, 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.