Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005008.1

Orthogroup ID

OG0002468

Physical Location & Seq

Genomic Coordinates Reverse (-)

94522 .. 95394

Gene Structure 873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005008.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

atgcagatctccagagaccatgatgacaacccatgcctaaaacaacaacaactacccctacgctctcttcatttgggtctcaaggaccacactattgtaccccatcatccacaaaccccagtatcccaccaaaatagtccctcctccgccatgttggccgatctcttgtccccaaccatgatcccgggactcatgtccggggactacattgggatggagagctgcgttgacgtcctcagggatgaagacgaatcacactgtgattacaaacaacaaaactgctacaaccaaaaggtgcaagataagagagaggagaagagactggcgatgatgaagaggatggagcttcctcctccgattccgatgctggcgcgcacggagaatctcccctcccacatgccgtgggttttgaagaggcattacacgaccgatggaaggttgattttgacagaggagaaggtcaggcatcatgagtattttagggcgcacagatccaacggcagactgaccttgcagctcgttcctcttgatgacgagttgttggcctcgcctttcacggccaatcagaaggacaatatggatgaggcaaatgctcatgatgatgacgacagcgaagaaaatgaagaggatgattatgataggtatgatgatggatgtagtgaggatgaggaagaggaagaggaagaggaggagaatgagaaagaggaggaggaggatgaacaagatgatggggttgatgatttgcagtaccatgatggtgtgcctgaagagccaatttcgacaggaaagtgtttcaatttcaacagtgtgggaacaggttcccggtgtattttcggggtgccagtgccagcgatcaggcaagttcatagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4413

Protein Analysis

290

Amino Acids

33.38

Weight (kDa)

4.53

Isoelectric Point (pI)

72.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22110 AT1G22110 AT1G22110 AT1G77932
fragaria_vesca	FvH4_5g38140 FvH4_5g38160 FvH4_5g38160 FvH4_5g38160
malus_domestica	MD08G1176500.v1.1 MD08G1219800.v1.1 MD15G1363200.v1.1 MD15G1408400.v1.1 MD15G1409900.v1.1
prunus_persica	Prupe.1G096600_v2.0.a1 Prupe.1G510300_v2.0.a1 Prupe.1G510900_v2.0.a1 Prupe.1G552400_v2.0.a1
pyrus_communis	pycom08g19080 pycom15g32490
rosa_chinensis	RchiOBHm_Chr7g0240121
rosa_laevigata	RLG00000000700 RLG00000000701
rosa_multiflora	Rmu_sc0005008.1_g000021 Rmu_sc0005008.1_g000024
rosa_roxburghii	Rroxscaffold_3G00220390 Rroxscaffold_3G00220400
rosa_rugosa	Rorug04G0113200 Rorug07G0333300 Rorug07G0333500 Rorug07G0333600 Rorug07G0333700 Rorug07G0333800
rosa_samantha	Rh7AG487000 Rh7AG487200 Rh7BG459700 Rh7CG503800 Rh7CG503900 Rh7DG472100 Rh7DG472200
rosa_wichuraiana	Rw7G040810 Rw7G040820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	234
AccB1I	GGYRCC	1 cut(s)	838
AccII	CGCG	1 cut(s)	373
AciI	CCGC	1 cut(s)	147
AclWI	GGATC	2 cut(s)	175, 486
AcoI	YGGCCR	2 cut(s)	156, 558
AcuI	CTGAAG	1 cut(s)	786
AcyI	GRCGYC	1 cut(s)	231
AdeI	CACNNNGTG	1 cut(s)	260
AfaI	GTAC	2 cut(s)	99, 749
AfiI	CCNNNNNNNGG	1 cut(s)	435
AgsI	TTSAA	3 cut(s)	412, 796, 802
AluBI	AGCT	3 cut(s)	222, 346, 517
AluI	AGCT	3 cut(s)	222, 346, 517
Alw26I	GTCTC	3 cut(s)	9, 83, 313
AlwI	GGATC	2 cut(s)	175, 486
Ama87I	CYCGRG	1 cut(s)	184
AoxI	GGCC	3 cut(s)	156, 543, 558
ApeKI	GCWGC	2 cut(s)	222, 514
Asp700I	GAANNNNTTC	1 cut(s)	817
AspLEI	GCGC	3 cut(s)	373, 375, 487
AspS9I	GGNCC	1 cut(s)	85
AsuC2I	CCSGG	4 cut(s)	185, 186, 199, 823
AvaI	CYCGRG	1 cut(s)	184
AvaII	GGWCC	1 cut(s)	85
AxyI	CCTNAGG	1 cut(s)	236
BaeI	ACNNNNGTAYC	4 cut(s)	81, 105, 114, 138
BanI	GGYRCC	1 cut(s)	838
BarI	GAAGNNNNNNTAC	2 cut(s)	404, 436
BbsI	GAAGAC	1 cut(s)	252
BbvI	GCAGC	2 cut(s)	209, 526
BccI	CCATC	7 cut(s)	111, 208, 334, 425, 644, 722, 749
BceAI	ACGGC	3 cut(s)	385, 514, 573
BcgI	CGANNNNNNTGC	2 cut(s)	346, 380
BciVI	GTATCC	1 cut(s)	133
BcnI	CCSGG	4 cut(s)	185, 186, 199, 823
BcoDI	GTCTC	3 cut(s)	9, 83, 313
BfuI	GTATCC	1 cut(s)	133
BglI	GCCNNNNNGGC	1 cut(s)	155
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	2 cut(s)	223, 515
BlsI	GCNGC	2 cut(s)	224, 516
Bme1390I	CCNGG	4 cut(s)	185, 186, 199, 823
Bme18I	GGWCC	1 cut(s)	85
BmeT110I	CYCGRG	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	2 cut(s)	820, 840
BmrFI	CCNGG	4 cut(s)	185, 186, 199, 823
BmrI	ACTGGG	1 cut(s)	113
BmsI	GCATC	2 cut(s)	354, 475
BmuI	ACTGGG	1 cut(s)	113
BoxI	GACNNNNGTC	1 cut(s)	193
BpiI	GAAGAC	1 cut(s)	252
BpuEI	CTTGAG	1 cut(s)	65
BpuMI	CCSGG	4 cut(s)	185, 186, 199, 823
BsaHI	GRCGYC	1 cut(s)	231
BsaI	GGTCTC	2 cut(s)	9, 83
BsaJI	CCNNGG	3 cut(s)	184, 198, 401
Bsc4I	CCNNNNNNNGG	1 cut(s)	435
Bse1I	ACTGG	3 cut(s)	119, 327, 842
Bse21I	CCTNAGG	1 cut(s)	236
BseDI	CCNNGG	3 cut(s)	184, 198, 401
BseGI	GGATG	9 cut(s)	106, 219, 247, 345, 586, 634, 659, 670, 721
BseLI	CCNNNNNNNGG	1 cut(s)	435
BseMII	CTCAG	1 cut(s)	250
BseNI	ACTGG	3 cut(s)	119, 327, 842
BsePI	GCGCGC	1 cut(s)	371
BseRI	GAGGAG	9 cut(s)	133, 326, 342, 467, 701, 704, 719, 722, 725
BseXI	GCAGC	2 cut(s)	209, 526
Bsh1236I	CGCG	1 cut(s)	373
Bsh1285I	CGRYCG	1 cut(s)	429
BshFI	GGCC	3 cut(s)	158, 545, 560
BshNI	GGYRCC	1 cut(s)	838
BsiEI	CGRYCG	1 cut(s)	429
BsiHKCI	CYCGRG	1 cut(s)	184
BsiSI	CCGG	3 cut(s)	185, 198, 823
BslFI	GGGAC	4 cut(s)	123, 154, 201, 215
BslI	CCNNNNNNNGG	1 cut(s)	435
BsmAI	GTCTC	3 cut(s)	9, 83, 313
BsmFI	GGGAC	4 cut(s)	123, 154, 201, 215
BsnI	GGCC	3 cut(s)	158, 545, 560
Bso31I	GGTCTC	2 cut(s)	9, 83
BsoBI	CYCGRG	1 cut(s)	184
Bsp143I	GATC	5 cut(s)	6, 160, 180, 491, 852
BspACI	CCGC	1 cut(s)	147
BspANI	GGCC	3 cut(s)	158, 545, 560
BspCNI	CTCAG	1 cut(s)	249
BspFNI	CGCG	1 cut(s)	373
BspHI	TCATGA	2 cut(s)	469, 595
BspLI	GGNNCC	2 cut(s)	820, 840
BspPI	GGATC	2 cut(s)	175, 486
BspQI	GCTCTTC	1 cut(s)	762
BspT107I	GGYRCC	1 cut(s)	838
BspTNI	GGTCTC	2 cut(s)	9, 83
BsrI	ACTGG	3 cut(s)	119, 327, 842
BssECI	CCNNGG	3 cut(s)	184, 198, 401
BssHII	GCGCGC	1 cut(s)	371
BssMI	GATC	5 cut(s)	6, 160, 180, 491, 852
BssNI	GRCGYC	1 cut(s)	231
Bst4CI	ACNGT	2 cut(s)	260, 806
Bst6I	CTCTTC	9 cut(s)	72, 311, 329, 407, 618, 666, 672, 678, 762
BstACI	GRCGYC	1 cut(s)	231
BstC8I	GCNNGC	3 cut(s)	369, 373, 849
BstDEI	CTNAG	1 cut(s)	236
BstDSI	CCRYGG	1 cut(s)	401
BstF5I	GGATG	9 cut(s)	106, 219, 247, 345, 586, 634, 659, 670, 721
BstFNI	CGCG	1 cut(s)	373
BstHHI	GCGC	3 cut(s)	373, 375, 487
BstKTI	GATC	5 cut(s)	9, 163, 183, 494, 855
BstMAI	GTCTC	3 cut(s)	9, 83, 313
BstMBI	GATC	5 cut(s)	6, 160, 180, 491, 852
BstMCI	CGRYCG	1 cut(s)	429
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 769
BstNSI	RCATGY	1 cut(s)	400
BstPAI	GACNNNNGTC	1 cut(s)	193
BstSCI	CCNGG	4 cut(s)	183, 184, 197, 821
BstUI	CGCG	1 cut(s)	373
BstV1I	GCAGC	2 cut(s)	209, 526
BstV2I	GAAGAC	1 cut(s)	252
BstX2I	RGATCY	2 cut(s)	6, 491
BstYI	RGATCY	2 cut(s)	6, 491
Bsu36I	CCTNAGG	1 cut(s)	236
BsuI	GTATCC	1 cut(s)	133
BsuRI	GGCC	3 cut(s)	158, 545, 560
BtgI	CCRYGG	1 cut(s)	401
BtgZI	GCGATG	1 cut(s)	341
BtsCI	GGATG	9 cut(s)	106, 219, 247, 345, 586, 634, 659, 670, 721
BtsIMutI	CAGTG	3 cut(s)	256, 811, 849
Cac8I	GCNNGC	3 cut(s)	369, 373, 849
CciI	TCATGA	2 cut(s)	469, 595
CfoI	GCGC	3 cut(s)	373, 375, 487
Cfr13I	GGNCC	1 cut(s)	85
Cfr9I	CCCGGG	1 cut(s)	184
Csp6I	GTAC	2 cut(s)	98, 748
CviAII	CATG	9 cut(s)	20, 33, 151, 178, 193, 397, 470, 596, 752
CviJI	RGCY	7 cut(s)	158, 222, 346, 517, 545, 560, 772
CviKI_1	RGCY	7 cut(s)	158, 222, 346, 517, 545, 560, 772
CviQI	GTAC	2 cut(s)	98, 748
DdeI	CTNAG	1 cut(s)	236
DpnI	GATC	5 cut(s)	8, 162, 182, 493, 854
DpnII	GATC	5 cut(s)	6, 160, 180, 491, 852
DraIII	CACNNNGTG	1 cut(s)	260
EaeI	YGGCCR	2 cut(s)	156, 558
Eam1104I	CTCTTC	9 cut(s)	72, 311, 329, 407, 618, 666, 672, 678, 762
EarI	CTCTTC	9 cut(s)	72, 311, 329, 407, 618, 666, 672, 678, 762
EciI	GGCGGA	1 cut(s)	136
Eco31I	GGTCTC	2 cut(s)	9, 83
Eco47I	GGWCC	1 cut(s)	85
Eco57I	CTGAAG	1 cut(s)	786
Eco81I	CCTNAGG	1 cut(s)	236
Eco88I	CYCGRG	1 cut(s)	184
FaeI	CATG	9 cut(s)	23, 36, 154, 181, 196, 400, 473, 599, 755
FaqI	GGGAC	4 cut(s)	123, 154, 201, 215
FatI	CATG	9 cut(s)	19, 32, 150, 177, 192, 396, 469, 595, 751
Fnu4HI	GCNGC	2 cut(s)	223, 515
FokI	GGATG	9 cut(s)	93, 226, 254, 352, 593, 641, 666, 677, 728
Fsp4HI	GCNGC	2 cut(s)	223, 515
GlaI	GCGC	3 cut(s)	372, 374, 486
GluI	GCNGC	2 cut(s)	223, 515
HaeIII	GGCC	3 cut(s)	158, 545, 560
HapII	CCGG	3 cut(s)	185, 198, 823
HhaI	GCGC	3 cut(s)	373, 375, 487
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	9 cut(s)	23, 36, 154, 181, 196, 400, 473, 599, 755
Hin6I	GCGC	3 cut(s)	371, 373, 485
HinP1I	GCGC	3 cut(s)	371, 373, 485
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	4 cut(s)	189, 251, 358, 382
HpaII	CCGG	3 cut(s)	185, 198, 823
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	3 cut(s)	357, 363, 567
Hpy188III	TCNNGA	4 cut(s)	12, 470, 527, 596
Hpy8I	GTNNAC	1 cut(s)	229
HpyAV	CCTTC	3 cut(s)	429, 451, 562
HpyCH4III	ACNGT	2 cut(s)	260, 806
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	4 cut(s)	4, 298, 514, 745
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 769
HpyF3I	CTNAG	1 cut(s)	236
HpySE526I	ACGT	1 cut(s)	231
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	9 cut(s)	23, 36, 154, 181, 196, 400, 473, 599, 755
HspAI	GCGC	3 cut(s)	371, 373, 485
Kzo9I	GATC	5 cut(s)	6, 160, 180, 491, 852
LguI	GCTCTTC	1 cut(s)	762
LmnI	GCTCC	1 cut(s)	343
Lsp1109I	GCAGC	2 cut(s)	209, 526
LweI	GCATC	2 cut(s)	354, 475
MaeII	ACGT	1 cut(s)	231
MalI	GATC	5 cut(s)	8, 162, 182, 493, 854
MboI	GATC	5 cut(s)	6, 160, 180, 491, 852
MflI	RGATCY	2 cut(s)	6, 491
MluCI	AATT	2 cut(s)	774, 796
MlyI	GAGTC	1 cut(s)	183
MmeI	TCCRAC	1 cut(s)	519
MroXI	GAANNNNTTC	1 cut(s)	817
MslI	CAYNNNNRTG	3 cut(s)	212, 600, 756
MspI	CCGG	3 cut(s)	185, 198, 823
MspR9I	CCNGG	4 cut(s)	185, 186, 199, 823
MvnI	CGCG	1 cut(s)	373
MwoI	GCNNNNNNNGC	2 cut(s)	155, 769
NciI	CCSGG	4 cut(s)	185, 186, 199, 823
NdeII	GATC	5 cut(s)	6, 160, 180, 491, 852
NlaIII	CATG	9 cut(s)	23, 36, 154, 181, 196, 400, 473, 599, 755
NlaIV	GGNNCC	2 cut(s)	820, 840
NspI	RCATGY	1 cut(s)	400
PagI	TCATGA	2 cut(s)	469, 595
PauI	GCGCGC	1 cut(s)	371
PciSI	GCTCTTC	1 cut(s)	762
PdmI	GAANNNNTTC	1 cut(s)	817
PfeI	GAWTC	3 cut(s)	251, 358, 382
PkrI	GCNGC	2 cut(s)	224, 516
PleI	GAGTC	1 cut(s)	183
PpsI	GAGTC	1 cut(s)	183
PshAI	GACNNNNGTC	1 cut(s)	193
PspN4I	GGNNCC	2 cut(s)	820, 840
PspPI	GGNCC	1 cut(s)	85
PsuI	RGATCY	2 cut(s)	6, 491
PteI	GCGCGC	1 cut(s)	371
RsaI	GTAC	2 cut(s)	99, 749
RsaNI	GTAC	2 cut(s)	98, 748
RseI	CAYNNNNRTG	3 cut(s)	212, 600, 756
SapI	GCTCTTC	1 cut(s)	762
SatI	GCNGC	2 cut(s)	223, 515
Sau3AI	GATC	5 cut(s)	6, 160, 180, 491, 852
Sau96I	GGNCC	1 cut(s)	85
SchI	GAGTC	1 cut(s)	183
ScrFI	CCNGG	4 cut(s)	185, 186, 199, 823
SfaNI	GCATC	2 cut(s)	354, 475
SinI	GGWCC	1 cut(s)	85
SmaI	CCCGGG	1 cut(s)	186
SmiMI	CAYNNNNRTG	3 cut(s)	212, 600, 756
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	2 cut(s)	774, 796
SsiI	CCGC	1 cut(s)	147
StyD4I	CCNGG	4 cut(s)	183, 184, 197, 821
TaaI	ACNGT	2 cut(s)	260, 806
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	1 cut(s)	779
TaqII	GACCGA	1 cut(s)	443
TasI	AATT	2 cut(s)	774, 796
TfiI	GAWTC	3 cut(s)	251, 358, 382
TscAI	CASTG	3 cut(s)	263, 811, 849
TseI	GCWGC	2 cut(s)	222, 514
TspDTI	ATGAA	6 cut(s)	59, 258, 347, 636, 732, 854
TspGWI	ACGGA	1 cut(s)	392
TspMI	CCCGGG	1 cut(s)	184
TspRI	CASTG	3 cut(s)	263, 811, 849
VpaK11BI	GGWCC	1 cut(s)	85
XceI	RCATGY	1 cut(s)	400
XmaI	CCCGGG	1 cut(s)	184
XmnI	GAANNNNTTC	1 cut(s)	817
ZraI	GACGTC	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.