RLG00000000700

Fantastic Four meristem regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0002468
Physical Location & Seq
Reverse (-)
4048796 .. 4049966
1171 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000700

Sequence Viewer

Length: 1005 bp
ATGGATTTCACGATTGGAAGGTTATTTATCTGCACTGCTTATAAATCCATAATTTCCTCTCTCTTTATGTTGTGGGGTTCGAGGTCAACATGTCCCATGCAAACCCCAAAAGATTCGACGCATCAAAACCTCAAGTTGGGTCTCAAAACCCTAATTTTCAACCCTAAATCCCATAATCATCGCCACATCGTTCAAAAGAACTACAAGCTCGCGCCACAATCGCCATCTTCGCAGTCTTCACTCACTTATTCGTGGTCGTTATTGGATAACTCATCGTCGTGGACATCGTCTATGTTGGACGACTTGCTCGGAACAGACAGTGGCGTCGCCTACATGACAACCTCAAACGACGATATCTTAATGTCAATGACGACCAGTACTGCTCGCGGTTACCCCAAGAAGAATAGTACTCGAGGAAGCGAAAGGGTGAAAAGGGAATTTCCACCACCAATACCGCTTCTGGCACAAACGGGGAATTTGCAGTGTCGCATGCCTTGGAATCTGACTAAGCATTATTCTAATGGAAGGCTAGTTTTGAAAGGAGAGAAAGCACAGCACCATGAGTACTTCGAAGCCGAACGTGACAGCGGCCGCCTTGTGTTGAAGCTTGTGCCACTGGACAGCACCATACTAACGACTTATGTTGTACCTGAATCGTCCGGTGGACATTTGGACGCGTGTGAGGAAAACGATGAAGAGCTTGAAATGGAAAACGTGCAGTTTGCTGAAGAAGACTATGCTAAGGATGAGAATGATGATGCTGATGATGACGAAGATGATGATGATGATGATGAATGTGACAACAATGTGGATGAGAGTAAAACTATGTTGGTTTGCAATTCGGTCCCTCAGTCACACTCGGAGATTAGCAGGTGTGATGAGAAATATGGAAATCTGCCGATGTATTTCACGAAGTCAGCTGCAGGTGTCCATGAACAACCGCAAAACTACTTTGCACACCCTGCTTCAGCTCCTCTTCGTCCATTGACTGCTGTGAAGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

335

Amino Acids

37.55

Weight (kDa)

4.98

Isoelectric Point (pI)

53.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 146 - 203 8.8e-15 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 42
AarI CACCTGC 2 cut(s) 861, 914
AasI GACNNNNNNGTC 1 cut(s) 323
Acc36I ACCTGC 2 cut(s) 861, 914
AccII CGCG 3 cut(s) 212, 387, 677
AciI CCGC 5 cut(s) 387, 455, 588, 592, 941
AcoI YGGCCR 1 cut(s) 589
AcsI RAATTY 2 cut(s) 437, 475
AcuI CTGAAG 2 cut(s) 747, 951
AcyI GRCGYC 1 cut(s) 324
AfaI GTAC 4 cut(s) 379, 409, 566, 648
AfiI CCNNNNNNNGG 1 cut(s) 136
AflIII ACRYGT 2 cut(s) 89, 675
AgsI TTSAA 5 cut(s) 160, 194, 538, 604, 704
AluBI AGCT 5 cut(s) 208, 607, 700, 920, 971
AluI AGCT 5 cut(s) 208, 607, 700, 920, 971
Alw26I GTCTC 1 cut(s) 146
Ama87I CYCGRG 1 cut(s) 411
AoxI GGCC 1 cut(s) 589
ApeKI GCWGC 1 cut(s) 920
ApoI RAATTY 2 cut(s) 437, 475
AspLEI GCGC 1 cut(s) 214
AspS9I GGNCC 1 cut(s) 844
AsuHPI GGTGA 1 cut(s) 439
AsuII TTCGAA 1 cut(s) 570
AvaI CYCGRG 1 cut(s) 411
AvaII GGWCC 1 cut(s) 844
BbsI GAAGAC 2 cut(s) 228, 738
BbvI GCAGC 1 cut(s) 907
BccI CCATC 1 cut(s) 232
BcoDI GTCTC 1 cut(s) 146
BfaI CTAG 1 cut(s) 530
BfmI CTRYAG 1 cut(s) 921
BfuAI ACCTGC 2 cut(s) 861, 914
BisI GCNGC 3 cut(s) 589, 592, 921
BlsI GCNGC 3 cut(s) 590, 593, 922
BmcAI AGTACT 3 cut(s) 379, 409, 566
Bme18I GGWCC 1 cut(s) 844
BmeT110I CYCGRG 1 cut(s) 411
BmgT120I GGNCC 1 cut(s) 844
BmiI GGNNCC 1 cut(s) 846
BmsI GCATC 2 cut(s) 130, 748
BpiI GAAGAC 2 cut(s) 228, 738
Bpu10I CCTNAGC 1 cut(s) 741
Bpu14I TTCGAA 1 cut(s) 570
BpuEI CTTGAG 1 cut(s) 116
BsaHI GRCGYC 1 cut(s) 324
BsaI GGTCTC 1 cut(s) 146
BsaJI CCNNGG 1 cut(s) 494
BsaWI WCCGGW 1 cut(s) 659
Bsc4I CCNNNNNNNGG 1 cut(s) 136
Bse1I ACTGG 2 cut(s) 375, 621
BseDI CCNNGG 1 cut(s) 494
BseGI GGATG 2 cut(s) 751, 817
BseLI CCNNNNNNNGG 1 cut(s) 136
BseMII CTCAG 1 cut(s) 863
BseNI ACTGG 2 cut(s) 375, 621
BseRI GAGGAG 1 cut(s) 963
BseX3I CGGCCG 1 cut(s) 589
BseXI GCAGC 1 cut(s) 907
BsgI GTGCAG 2 cut(s) 16, 737
Bsh1236I CGCG 3 cut(s) 212, 387, 677
Bsh1285I CGRYCG 1 cut(s) 592
BshFI GGCC 1 cut(s) 591
BsiEI CGRYCG 1 cut(s) 592
BsiHKCI CYCGRG 1 cut(s) 411
BsiSI CCGG 1 cut(s) 660
BslFI GGGAC 2 cut(s) 78, 830
BslI CCNNNNNNNGG 1 cut(s) 136
BsmAI GTCTC 1 cut(s) 146
BsmFI GGGAC 2 cut(s) 78, 830
BsnI GGCC 1 cut(s) 591
Bso31I GGTCTC 1 cut(s) 146
BsoBI CYCGRG 1 cut(s) 411
Bsp119I TTCGAA 1 cut(s) 570
BspACI CCGC 5 cut(s) 387, 455, 588, 592, 941
BspANI GGCC 1 cut(s) 591
BspCNI CTCAG 1 cut(s) 862
BspFNI CGCG 3 cut(s) 212, 387, 677
BspLI GGNNCC 1 cut(s) 846
BspMAI CTGCAG 1 cut(s) 925
BspMI ACCTGC 2 cut(s) 861, 914
BspQI GCTCTTC 1 cut(s) 690
BspT104I TTCGAA 1 cut(s) 570
BspTNI GGTCTC 1 cut(s) 146
BsrI ACTGG 2 cut(s) 375, 621
BssECI CCNNGG 1 cut(s) 494
BssNI GRCGYC 1 cut(s) 324
BssT1I CCWWGG 1 cut(s) 494
Bst4CI ACNGT 1 cut(s) 320
Bst6I CTCTTC 2 cut(s) 690, 981
BstACI GRCGYC 1 cut(s) 324
BstAPI GCANNNNNTGC 1 cut(s) 962
BstBI TTCGAA 1 cut(s) 570
BstC8I GCNNGC 3 cut(s) 210, 385, 491
BstDEI CTNAG 3 cut(s) 507, 741, 849
BstEII GGTNACC 1 cut(s) 389
BstF5I GGATG 2 cut(s) 751, 817
BstFNI CGCG 3 cut(s) 212, 387, 677
BstHHI GCGC 1 cut(s) 214
BstMAI GTCTC 1 cut(s) 146
BstMCI CGRYCG 1 cut(s) 592
BstMWI GCNNNNNNNGC 3 cut(s) 220, 229, 962
BstNSI RCATGY 2 cut(s) 93, 493
BstPI GGTNACC 1 cut(s) 389
BstSFI CTRYAG 1 cut(s) 921
BstUI CGCG 3 cut(s) 212, 387, 677
BstV1I GCAGC 1 cut(s) 907
BstV2I GAAGAC 2 cut(s) 228, 738
BstZI CGGCCG 1 cut(s) 589
BsuRI GGCC 1 cut(s) 591
BtgZI GCGATG 1 cut(s) 164
BtsCI GGATG 2 cut(s) 751, 817
BtsI GCAGTG 2 cut(s) 33, 488
BtsIMutI CAGTG 4 cut(s) 33, 325, 488, 614
BveI ACCTGC 2 cut(s) 861, 914
Cac8I GCNNGC 3 cut(s) 210, 385, 491
CciNI GCGGCCGC 1 cut(s) 589
CfoI GCGC 1 cut(s) 214
Cfr13I GGNCC 1 cut(s) 844
CseI GACGC 3 cut(s) 127, 313, 683
Csp6I GTAC 4 cut(s) 378, 408, 565, 647
CviAII CATG 6 cut(s) 90, 97, 334, 490, 560, 932
CviJI RGCY 8 cut(s) 208, 529, 575, 591, 607, 700, 920, 971
CviKI_1 RGCY 8 cut(s) 208, 529, 575, 591, 607, 700, 920, 971
CviQI GTAC 4 cut(s) 378, 408, 565, 647
DdeI CTNAG 3 cut(s) 507, 741, 849
DrdI GACNNNNNNGTC 1 cut(s) 323
DseDI GACNNNNNNGTC 1 cut(s) 323
EaeI YGGCCR 1 cut(s) 589
EagI CGGCCG 1 cut(s) 589
Eam1104I CTCTTC 2 cut(s) 690, 981
EarI CTCTTC 2 cut(s) 690, 981
EclXI CGGCCG 1 cut(s) 589
Eco130I CCWWGG 1 cut(s) 494
Eco31I GGTCTC 1 cut(s) 146
Eco32I GATATC 1 cut(s) 355
Eco47I GGWCC 1 cut(s) 844
Eco52I CGGCCG 1 cut(s) 589
Eco57I CTGAAG 2 cut(s) 747, 951
Eco88I CYCGRG 1 cut(s) 411
Eco91I GGTNACC 1 cut(s) 389
EcoO65I GGTNACC 1 cut(s) 389
EcoRV GATATC 1 cut(s) 355
EcoT14I CCWWGG 1 cut(s) 494
ErhI CCWWGG 1 cut(s) 494
FaeI CATG 6 cut(s) 93, 100, 337, 493, 563, 935
FaqI GGGAC 2 cut(s) 78, 830
FatI CATG 6 cut(s) 89, 96, 333, 489, 559, 931
Fnu4HI GCNGC 3 cut(s) 589, 592, 921
FokI GGATG 2 cut(s) 758, 824
Fsp4HI GCNGC 3 cut(s) 589, 592, 921
FspBI CTAG 1 cut(s) 530
GlaI GCGC 1 cut(s) 213
GluI GCNGC 3 cut(s) 589, 592, 921
HaeIII GGCC 1 cut(s) 591
HapII CCGG 1 cut(s) 660
HgaI GACGC 3 cut(s) 127, 313, 683
HhaI GCGC 1 cut(s) 214
Hin1I GRCGYC 1 cut(s) 324
Hin1II CATG 6 cut(s) 93, 100, 337, 493, 563, 935
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HincII GTYRAC 1 cut(s) 87
HindII GTYRAC 1 cut(s) 87
HindIII AAGCTT 1 cut(s) 605
HinfI GANTC 3 cut(s) 113, 499, 653
HpaII CCGG 1 cut(s) 660
HphI GGTGA 1 cut(s) 439
Hpy166II GTNNAC 3 cut(s) 87, 282, 665
Hpy188I TCNGA 3 cut(s) 311, 504, 862
Hpy188III TCNNGA 2 cut(s) 10, 910
Hpy8I GTNNAC 3 cut(s) 87, 282, 665
Hpy99I CGWCG 4 cut(s) 121, 280, 329, 353
HpyAV CCTTC 2 cut(s) 12, 519
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4IV ACGT 2 cut(s) 580, 714
HpyCH4V TGCA 7 cut(s) 33, 100, 481, 718, 837, 923, 956
HpyF10VI GCNNNNNNNGC 3 cut(s) 220, 229, 962
HpyF3I CTNAG 3 cut(s) 507, 741, 849
HpySE526I ACGT 2 cut(s) 580, 714
Hsp92I GRCGYC 1 cut(s) 324
Hsp92II CATG 6 cut(s) 93, 100, 337, 493, 563, 935
HspAI GCGC 1 cut(s) 212
LguI GCTCTTC 1 cut(s) 690
LmnI GCTCC 1 cut(s) 976
LpnPI CCDG 8 cut(s) 388, 446, 602, 663, 673, 856, 909, 975
Lsp1109I GCAGC 1 cut(s) 907
LweI GCATC 2 cut(s) 130, 748
MaeI CTAG 1 cut(s) 530
MaeII ACGT 2 cut(s) 580, 714
MaeIII GTNAC 4 cut(s) 389, 581, 797, 852
MboII GAAGA 8 cut(s) 219, 228, 412, 707, 740, 743, 785, 968
MluCI AATT 6 cut(s) 51, 153, 437, 475, 838, 1000
MluI ACGCGT 1 cut(s) 675
MmeI TCCRAC 1 cut(s) 276
MnlI CCTC 8 cut(s) 67, 75, 140, 352, 407, 676, 858, 984
MseI TTAA 1 cut(s) 359
MslI CAYNNNNRTG 1 cut(s) 277
MspA1I CMGCKG 2 cut(s) 588, 920
MspI CCGG 1 cut(s) 660
MvnI CGCG 3 cut(s) 212, 387, 677
MwoI GCNNNNNNNGC 3 cut(s) 220, 229, 962
NlaIII CATG 6 cut(s) 93, 100, 337, 493, 563, 935
NlaIV GGNNCC 1 cut(s) 846
NmuCI GTSAC 3 cut(s) 581, 797, 852
NotI GCGGCCGC 1 cut(s) 589
NspI RCATGY 2 cut(s) 93, 493
NspV TTCGAA 1 cut(s) 570
PaeI GCATGC 1 cut(s) 493
PaeR7I CTCGAG 1 cut(s) 411
PaqCI CACCTGC 2 cut(s) 861, 914
PciI ACATGT 1 cut(s) 89
PciSI GCTCTTC 1 cut(s) 690
PcsI WCGNNNNNNNCGW 1 cut(s) 284
PfeI GAWTC 3 cut(s) 113, 499, 653
PflFI GACNNNGTC 1 cut(s) 286
PkrI GCNGC 3 cut(s) 590, 593, 922
PscI ACATGT 1 cut(s) 89
PsiI TTATAA 1 cut(s) 42
PspEI GGTNACC 1 cut(s) 389
PspN4I GGNNCC 1 cut(s) 846
PspPI GGNCC 1 cut(s) 844
PspXI VCTCGAGB 1 cut(s) 411
PstI CTGCAG 1 cut(s) 925
PsyI GACNNNGTC 1 cut(s) 286
PvuII CAGCTG 1 cut(s) 920
RsaI GTAC 4 cut(s) 379, 409, 566, 648
RsaNI GTAC 4 cut(s) 378, 408, 565, 647
RseI CAYNNNNRTG 1 cut(s) 277
SapI GCTCTTC 1 cut(s) 690
SaqAI TTAA 1 cut(s) 359
SatI GCNGC 3 cut(s) 589, 592, 921
Sau96I GGNCC 1 cut(s) 844
ScaI AGTACT 3 cut(s) 379, 409, 566
SfaNI GCATC 2 cut(s) 130, 748
SfcI CTRYAG 1 cut(s) 921
Sfr274I CTCGAG 1 cut(s) 411
SfuI TTCGAA 1 cut(s) 570
SinI GGWCC 1 cut(s) 844
SlaI CTCGAG 1 cut(s) 411
SmiMI CAYNNNNRTG 1 cut(s) 277
SmlI CTYRAG 2 cut(s) 131, 411
SmoI CTYRAG 2 cut(s) 131, 411
SphI GCATGC 1 cut(s) 493
Sse9I AATT 6 cut(s) 51, 153, 437, 475, 838, 1000
SsiI CCGC 5 cut(s) 387, 455, 588, 592, 941
SspMI CTAG 1 cut(s) 530
StyI CCWWGG 1 cut(s) 494
TaaI ACNGT 1 cut(s) 320
TaiI ACGT 2 cut(s) 583, 717
TaqI TCGA 4 cut(s) 80, 116, 412, 570
TaqII GACCGA 1 cut(s) 832
TasI AATT 6 cut(s) 51, 153, 437, 475, 838, 1000
TatI WGTACW 3 cut(s) 377, 407, 564
TauI GCSGC 2 cut(s) 591, 594
TfiI GAWTC 3 cut(s) 113, 499, 653
Tru1I TTAA 1 cut(s) 359
Tru9I TTAA 1 cut(s) 359
TscAI CASTG 4 cut(s) 40, 325, 488, 621
TseFI GTSAC 3 cut(s) 581, 797, 852
TseI GCWGC 1 cut(s) 920
Tsp45I GTSAC 3 cut(s) 581, 797, 852
TspDTI ATGAA 3 cut(s) 708, 807, 948
TspRI CASTG 4 cut(s) 40, 325, 488, 621
Tth111I GACNNNGTC 1 cut(s) 286
VpaK11BI GGWCC 1 cut(s) 844
XapI RAATTY 2 cut(s) 437, 475
XceI RCATGY 2 cut(s) 93, 493
XhoI CTCGAG 1 cut(s) 411
XspI CTAG 1 cut(s) 530
ZrmI AGTACT 3 cut(s) 379, 409, 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.