Rh7BG459700

protein dimerization activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0002468
Physical Location & Seq
Forward (+)
54535394 .. 54538655
3262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG459700.1

Sequence Viewer

Length: 882 bp
ATGCAGATCTCCAGAGACCATGATGACAATCCATGCCTAAAACAACAACAACAACTACCCCTTCGCTCTCTTCATTTGGGTCTCAAGGACCACACTATTGTACCCCATCATCCACAAACCCCAGTATCCCACCAAAATAGTCCCTCCTCCTCCATGTTGGCCTATCTCTTGTCCCCAACCATGACCCCAGGACTCATGTCCGGGGACTACATTGGGATGGAGAGCTGCGTCGACGTCCTCAGGGATGAAGACGAATCACACTGCGATTACAAACAACAAAACTGCTACAACCAAAAGGTGCAAGACAAGAGAGAGGAGAAGAGACTGGCGATGATGAAGAGGAAGGAGCTTCCTCCTCCGATTCCGATGCTGGCGCGCACGGAGAATCTCCCCTCCCACATGCCGTGGGTTTTGAAGAGGCATTACACGACCGATGGAAGGTTGATTTTGACAGAGGAGAAGGTCAGGCATCATGAGTATTTTAGGGCGCACAGATCCAACGGCCGACTGACCTTGCAGCTCGTTCCTCTTGATGACGAGTTGTTGGCCTCGCCTCTCACGGCCAATCAGAAGGACAATATGGATGAGGCAAATGCTCATGATGACGACGACAACGAAGAGAATGAAGAGGATGATTATGATAGGTATGATGATGGATGTGGTGAGGATGAGGAAGAGGAAGAGGAAGAGGAGGAGAAAGAGAAAGAGAAAGAGGAGGAGGAGGATGAACATGATGATGGGGTTGATGATTTGCAGCACCATGATGGTGTGCCTGAAGAGCCAATTTCGACAGGAAAGTGTTTCAATTTCAACAGTGTGGGAACAGGTTCCCCGTGTATTTTCGGGGTGCCAGTGCCGGCGATCAGGCAAGTTCATAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4413

Protein Analysis

293

Amino Acids

33.71

Weight (kDa)

4.65

Isoelectric Point (pI)

69.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 116 - 174 6.7e-20 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 237
AccB1I GGYRCC 1 cut(s) 847
AccI GTMKAC 1 cut(s) 231
AccII CGCG 1 cut(s) 376
AclWI GGATC 1 cut(s) 489
AcoI YGGCCR 2 cut(s) 502, 561
AcuI CTGAAG 1 cut(s) 795
AcyI GRCGYC 1 cut(s) 234
AfaI GTAC 1 cut(s) 102
AfiI CCNNNNNNNGG 1 cut(s) 438
AgsI TTSAA 3 cut(s) 415, 805, 811
AjnI CCWGG 1 cut(s) 187
AluBI AGCT 3 cut(s) 225, 349, 520
AluI AGCT 3 cut(s) 225, 349, 520
Alw26I GTCTC 3 cut(s) 9, 86, 316
AlwI GGATC 1 cut(s) 489
AoxI GGCC 4 cut(s) 159, 502, 546, 561
ApeKI GCWGC 3 cut(s) 225, 517, 754
Asp700I GAANNNNTTC 1 cut(s) 826
AspLEI GCGC 3 cut(s) 376, 378, 490
AspS9I GGNCC 1 cut(s) 88
AsuC2I CCSGG 1 cut(s) 202
AsuHPI GGTGA 1 cut(s) 674
AvaII GGWCC 1 cut(s) 88
AxyI CCTNAGG 1 cut(s) 239
BaeI ACNNNNGTAYC 4 cut(s) 84, 108, 117, 141
BanI GGYRCC 1 cut(s) 847
BarI GAAGNNNNNNTAC 2 cut(s) 407, 439
BbsI GAAGAC 1 cut(s) 255
BbvI GCAGC 3 cut(s) 212, 529, 766
BccI CCATC 6 cut(s) 114, 211, 428, 647, 731, 758
BceAI ACGGC 3 cut(s) 388, 517, 576
BcgI CGANNNNNNTGC 2 cut(s) 349, 383
BciT130I CCWGG 1 cut(s) 189
BciVI GTATCC 1 cut(s) 136
BcnI CCSGG 1 cut(s) 202
BcoDI GTCTC 3 cut(s) 9, 86, 316
BfuI GTATCC 1 cut(s) 136
BglII AGATCT 1 cut(s) 6
BisI GCNGC 3 cut(s) 226, 518, 755
BlsI GCNGC 3 cut(s) 227, 519, 756
Bme1390I CCNGG 2 cut(s) 189, 202
Bme18I GGWCC 1 cut(s) 88
BmgT120I GGNCC 1 cut(s) 88
BmiI GGNNCC 2 cut(s) 829, 849
BmrFI CCNGG 2 cut(s) 189, 202
BmrI ACTGGG 1 cut(s) 116
BmsI GCATC 2 cut(s) 357, 478
BmuI ACTGGG 1 cut(s) 116
BoxI GACNNNNGTC 1 cut(s) 196
BpiI GAAGAC 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 68
BpuMI CCSGG 1 cut(s) 202
BsaBI GATNNNNATC 1 cut(s) 27
BsaHI GRCGYC 1 cut(s) 234
BsaI GGTCTC 2 cut(s) 9, 86
BsaJI CCNNGG 3 cut(s) 187, 201, 404
Bsc4I CCNNNNNNNGG 1 cut(s) 438
Bse118I RCCGGY 1 cut(s) 856
Bse1I ACTGG 3 cut(s) 122, 330, 851
Bse21I CCTNAGG 1 cut(s) 239
Bse8I GATNNNNATC 1 cut(s) 27
BseBI CCWGG 1 cut(s) 189
BseDI CCNNGG 3 cut(s) 187, 201, 404
BseGI GGATG 8 cut(s) 109, 222, 250, 589, 637, 662, 673, 730
BseJI GATNNNNATC 1 cut(s) 27
BseLI CCNNNNNNNGG 1 cut(s) 438
BseMII CTCAG 1 cut(s) 253
BseNI ACTGG 3 cut(s) 122, 330, 851
BsePI GCGCGC 1 cut(s) 374
BseX3I CGGCCG 1 cut(s) 502
BseXI GCAGC 3 cut(s) 212, 529, 766
Bsh1236I CGCG 1 cut(s) 376
Bsh1285I CGRYCG 2 cut(s) 432, 505
BshFI GGCC 4 cut(s) 161, 504, 548, 563
BshNI GGYRCC 1 cut(s) 847
BsiEI CGRYCG 2 cut(s) 432, 505
BsiSI CCGG 2 cut(s) 201, 857
BslFI GGGAC 3 cut(s) 126, 157, 218
BslI CCNNNNNNNGG 1 cut(s) 438
BsmAI GTCTC 3 cut(s) 9, 86, 316
BsmFI GGGAC 3 cut(s) 126, 157, 218
BsnI GGCC 4 cut(s) 161, 504, 548, 563
Bso31I GGTCTC 2 cut(s) 9, 86
Bsp143I GATC 3 cut(s) 6, 494, 861
BspANI GGCC 4 cut(s) 161, 504, 548, 563
BspCNI CTCAG 1 cut(s) 252
BspFNI CGCG 1 cut(s) 376
BspHI TCATGA 2 cut(s) 472, 598
BspLI GGNNCC 2 cut(s) 829, 849
BspPI GGATC 1 cut(s) 489
BspQI GCTCTTC 1 cut(s) 771
BspT107I GGYRCC 1 cut(s) 847
BspTNI GGTCTC 2 cut(s) 9, 86
BsrFI RCCGGY 1 cut(s) 856
BsrI ACTGG 3 cut(s) 122, 330, 851
BssAI RCCGGY 1 cut(s) 856
BssECI CCNNGG 3 cut(s) 187, 201, 404
BssHII GCGCGC 1 cut(s) 374
BssMI GATC 3 cut(s) 6, 494, 861
BssNI GRCGYC 1 cut(s) 234
Bst2UI CCWGG 1 cut(s) 189
Bst4CI ACNGT 1 cut(s) 815
BstACI GRCGYC 1 cut(s) 234
BstC8I GCNNGC 3 cut(s) 372, 376, 858
BstDEI CTNAG 1 cut(s) 239
BstDSI CCRYGG 1 cut(s) 404
BstF5I GGATG 8 cut(s) 109, 222, 250, 589, 637, 662, 673, 730
BstFNI CGCG 1 cut(s) 376
BstHHI GCGC 3 cut(s) 376, 378, 490
BstKTI GATC 3 cut(s) 9, 497, 864
BstMAI GTCTC 3 cut(s) 9, 86, 316
BstMBI GATC 3 cut(s) 6, 494, 861
BstMCI CGRYCG 2 cut(s) 432, 505
BstMWI GCNNNNNNNGC 1 cut(s) 778
BstNI CCWGG 1 cut(s) 189
BstNSI RCATGY 1 cut(s) 403
BstPAI GACNNNNGTC 1 cut(s) 196
BstSCI CCNGG 2 cut(s) 187, 200
BstUI CGCG 1 cut(s) 376
BstV1I GCAGC 3 cut(s) 212, 529, 766
BstV2I GAAGAC 1 cut(s) 255
BstX2I RGATCY 2 cut(s) 6, 494
BstYI RGATCY 2 cut(s) 6, 494
BstZI CGGCCG 1 cut(s) 502
Bsu36I CCTNAGG 1 cut(s) 239
BsuI GTATCC 1 cut(s) 136
BsuRI GGCC 4 cut(s) 161, 504, 548, 563
BtgI CCRYGG 1 cut(s) 404
BtgZI GCGATG 1 cut(s) 344
BtsCI GGATG 8 cut(s) 109, 222, 250, 589, 637, 662, 673, 730
BtsI GCAGTG 1 cut(s) 259
BtsIMutI CAGTG 3 cut(s) 259, 820, 858
Cac8I GCNNGC 3 cut(s) 372, 376, 858
CciI TCATGA 2 cut(s) 472, 598
CfoI GCGC 3 cut(s) 376, 378, 490
Cfr10I RCCGGY 1 cut(s) 856
Cfr13I GGNCC 1 cut(s) 88
CseI GACGC 1 cut(s) 217
Csp6I GTAC 1 cut(s) 101
CviJI RGCY 8 cut(s) 161, 225, 349, 504, 520, 548, 563, 781
CviKI_1 RGCY 8 cut(s) 161, 225, 349, 504, 520, 548, 563, 781
CviQI GTAC 1 cut(s) 101
DdeI CTNAG 1 cut(s) 239
DpnI GATC 3 cut(s) 8, 496, 863
DpnII GATC 3 cut(s) 6, 494, 861
EaeI YGGCCR 2 cut(s) 502, 561
EagI CGGCCG 1 cut(s) 502
EclXI CGGCCG 1 cut(s) 502
Eco31I GGTCTC 2 cut(s) 9, 86
Eco47I GGWCC 1 cut(s) 88
Eco52I CGGCCG 1 cut(s) 502
Eco57I CTGAAG 1 cut(s) 795
Eco81I CCTNAGG 1 cut(s) 239
EcoRII CCWGG 1 cut(s) 187
FaqI GGGAC 3 cut(s) 126, 157, 218
FblI GTMKAC 1 cut(s) 231
Fnu4HI GCNGC 3 cut(s) 226, 518, 755
FokI GGATG 8 cut(s) 96, 229, 257, 596, 644, 669, 680, 737
Fsp4HI GCNGC 3 cut(s) 226, 518, 755
GlaI GCGC 3 cut(s) 375, 377, 489
GluI GCNGC 3 cut(s) 226, 518, 755
HaeIII GGCC 4 cut(s) 161, 504, 548, 563
HapII CCGG 2 cut(s) 201, 857
HgaI GACGC 1 cut(s) 217
HhaI GCGC 3 cut(s) 376, 378, 490
Hin1I GRCGYC 1 cut(s) 234
Hin6I GCGC 3 cut(s) 374, 376, 488
HinP1I GCGC 3 cut(s) 374, 376, 488
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HinfI GANTC 4 cut(s) 192, 254, 361, 385
HpaII CCGG 2 cut(s) 201, 857
HphI GGTGA 1 cut(s) 674
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 3 cut(s) 360, 366, 570
Hpy188III TCNNGA 4 cut(s) 12, 473, 530, 599
Hpy8I GTNNAC 1 cut(s) 232
Hpy99I CGWCG 3 cut(s) 233, 236, 611
HpyAV CCTTC 5 cut(s) 71, 337, 432, 454, 565
HpyCH4III ACNGT 1 cut(s) 815
HpyCH4IV ACGT 1 cut(s) 234
HpyCH4V TGCA 4 cut(s) 4, 301, 517, 754
HpyF10VI GCNNNNNNNGC 1 cut(s) 778
HpyF3I CTNAG 1 cut(s) 239
HpySE526I ACGT 1 cut(s) 234
Hsp92I GRCGYC 1 cut(s) 234
HspAI GCGC 3 cut(s) 374, 376, 488
KroI GCCGGC 1 cut(s) 856
KroNI GCCGGC 1 cut(s) 858
Kzo9I GATC 3 cut(s) 6, 494, 861
LguI GCTCTTC 1 cut(s) 771
LmnI GCTCC 1 cut(s) 346
Lsp1109I GCAGC 3 cut(s) 212, 529, 766
LweI GCATC 2 cut(s) 357, 478
MaeII ACGT 1 cut(s) 234
MalI GATC 3 cut(s) 8, 496, 863
MboI GATC 3 cut(s) 6, 494, 861
MflI RGATCY 2 cut(s) 6, 494
MluCI AATT 2 cut(s) 783, 805
MlyI GAGTC 1 cut(s) 186
MmeI TCCRAC 1 cut(s) 522
MroNI GCCGGC 1 cut(s) 856
MroXI GAANNNNTTC 1 cut(s) 826
MslI CAYNNNNRTG 4 cut(s) 215, 735, 762, 765
MspI CCGG 2 cut(s) 201, 857
MspR9I CCNGG 2 cut(s) 189, 202
MvaI CCWGG 1 cut(s) 189
MvnI CGCG 1 cut(s) 376
MwoI GCNNNNNNNGC 1 cut(s) 778
NaeI GCCGGC 1 cut(s) 858
NciI CCSGG 1 cut(s) 202
NdeII GATC 3 cut(s) 6, 494, 861
NgoMIV GCCGGC 1 cut(s) 856
NlaIV GGNNCC 2 cut(s) 829, 849
NspI RCATGY 1 cut(s) 403
PagI TCATGA 2 cut(s) 472, 598
PauI GCGCGC 1 cut(s) 374
PciSI GCTCTTC 1 cut(s) 771
PcsI WCGNNNNNNNCGW 1 cut(s) 612
PdiI GCCGGC 1 cut(s) 858
PdmI GAANNNNTTC 1 cut(s) 826
PfeI GAWTC 3 cut(s) 254, 361, 385
PkrI GCNGC 3 cut(s) 227, 519, 756
PleI GAGTC 1 cut(s) 186
PpsI GAGTC 1 cut(s) 186
PshAI GACNNNNGTC 1 cut(s) 196
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
PspN4I GGNNCC 2 cut(s) 829, 849
PspPI GGNCC 1 cut(s) 88
PsuI RGATCY 2 cut(s) 6, 494
PteI GCGCGC 1 cut(s) 374
RsaI GTAC 1 cut(s) 102
RsaNI GTAC 1 cut(s) 101
RseI CAYNNNNRTG 4 cut(s) 215, 735, 762, 765
SalI GTCGAC 1 cut(s) 230
SapI GCTCTTC 1 cut(s) 771
SatI GCNGC 3 cut(s) 226, 518, 755
Sau3AI GATC 3 cut(s) 6, 494, 861
Sau96I GGNCC 1 cut(s) 88
SchI GAGTC 1 cut(s) 186
ScrFI CCNGG 2 cut(s) 189, 202
SfaNI GCATC 2 cut(s) 357, 478
SgrDI CGTCGACG 1 cut(s) 230
SinI GGWCC 1 cut(s) 88
SmiMI CAYNNNNRTG 4 cut(s) 215, 735, 762, 765
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 2 cut(s) 783, 805
StyD4I CCNGG 2 cut(s) 187, 200
TaaI ACNGT 1 cut(s) 815
TaiI ACGT 1 cut(s) 237
TaqI TCGA 2 cut(s) 231, 788
TaqII GACCGA 1 cut(s) 446
TasI AATT 2 cut(s) 783, 805
TfiI GAWTC 3 cut(s) 254, 361, 385
TscAI CASTG 3 cut(s) 266, 820, 858
TseI GCWGC 3 cut(s) 225, 517, 754
TspDTI ATGAA 6 cut(s) 62, 261, 350, 639, 741, 863
TspGWI ACGGA 1 cut(s) 395
TspRI CASTG 3 cut(s) 266, 820, 858
VpaK11BI GGWCC 1 cut(s) 88
XceI RCATGY 1 cut(s) 403
XmiI GTMKAC 1 cut(s) 231
XmnI GAANNNNTTC 1 cut(s) 826
ZraI GACGTC 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.