Rh7CG503900

Fantastic Four meristem regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0002468
Physical Location & Seq
Forward (+)
68234663 .. 68235933
1271 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG503900.1

Sequence Viewer

Length: 1044 bp
ATGAAACGGTGCAGTGAAAGCAGACAAAGTATAGCTATTAAGAGGTCAAATCACACCATGGATTTCACGAGTGGAAGGTCATTTATCTGCACTGCTTATAAATCCATAATTTCCTCTCTCTGTTTGTTGTGGGGTTCGAGGTCAACATGTCACATGCAAACCCCAAAAGATTCGACGCATCAAAATCTCAAGTCGGGTCTCAAAACCCTAATTTTCAACCCTAAATCCGATAATCATGGCCACATCGTTCACAAGAACTACAAGCTCGCACCACCATCGCCATCTTCGCAGTCTTCACTCACTTATTCGTGGTCGTTATTGGATAACTCATCGTCGTGGACTTCGTCTATGATGGACGACTTGCTCGGAACAGACAGTGGCGTCGCCTACATGACAACCTCTAACGACGATATGTTAATGTCAATGACGACCAGCAGTTACCCCAAGAAGAAAAGTACTCGAGGAAGCAAAAGGGTGAAAAGGGAATTTCCACCGCCAATACCGCTTCTGGCACAAACGAGGAATATGCAGTGTCGCATGCCTTGGAATCTGACTAGGCATTACTCTAATGGAAGGCTAGTTCTGAAAGGAGAGAAAGCACGGCACCATGAGTACTTCGAAGCCGAACGTGACAGCGGCCGCCTTGTGTTGAAGCTTGTGCCTCTGGACAACACCATACTAACGACATATGATGTGACTGAATCGTTTGGTGGACATTTGGACGTGTGTGAGGAAAATGATGAAGAGCTTGAAATGGAAAACGTGCAGTTTGCTCAAGAAGACTATCCTGAGGATGATGATGCTGATGATGACGAAGATGATGCTGCTGCTGCTGCTGATGATGATGATGAATGTGATGACAATGTGGATGAACTATGCAAGTCGATGCCTCAGTCACACTCGGAGATCAGCAGGTGTGTTGGGAAATATGGAAATCTGCCGATGTATTTCACAAAGTCAGCTGCAAGTGTCCATGAACAACAGCAAAACTACTTTGCACACCCTGCTTCAGCTCCTCTTCGTCCAGTGACTGCTGTCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

347

Amino Acids

39.05

Weight (kDa)

5.45

Isoelectric Point (pI)

57.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 162 - 219 3.2e-15 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 99
AarI CACCTGC 1 cut(s) 903
AasI GACNNNNNNGTC 1 cut(s) 380
Acc36I ACCTGC 1 cut(s) 903
AccB1I GGYRCC 1 cut(s) 603
AciI CCGC 4 cut(s) 494, 503, 636, 640
AcoI YGGCCR 2 cut(s) 238, 637
AcsI RAATTY 1 cut(s) 485
AcuI CTGAAG 1 cut(s) 993
AcyI GRCGYC 1 cut(s) 381
AfaI GTAC 2 cut(s) 457, 614
AflIII ACRYGT 2 cut(s) 146, 723
AgsI TTSAA 3 cut(s) 217, 652, 752
AjiI CACGTC 1 cut(s) 724
AloI GAACNNNNNNTCC 2 cut(s) 564, 596
AluBI AGCT 6 cut(s) 35, 265, 655, 748, 962, 1013
AluI AGCT 6 cut(s) 35, 265, 655, 748, 962, 1013
Alw26I GTCTC 1 cut(s) 203
AlwNI CAGNNNCTG 1 cut(s) 1031
Ama87I CYCGRG 1 cut(s) 459
AoxI GGCC 2 cut(s) 238, 637
ApeKI GCWGC 5 cut(s) 824, 827, 830, 833, 962
ApoI RAATTY 1 cut(s) 485
AsuHPI GGTGA 1 cut(s) 487
AsuII TTCGAA 1 cut(s) 618
AvaI CYCGRG 1 cut(s) 459
AxyI CCTNAGG 1 cut(s) 789
BalI TGGCCA 1 cut(s) 240
BanI GGYRCC 1 cut(s) 603
BauI CACGAG 1 cut(s) 67
BbsI GAAGAC 2 cut(s) 285, 786
BbvI GCAGC 5 cut(s) 811, 814, 817, 820, 949
BccI CCATC 3 cut(s) 283, 289, 346
BceAI ACGGC 1 cut(s) 617
BcgI CGANNNNNNTGC 6 cut(s) 258, 292, 508, 542, 803, 837
BcoDI GTCTC 1 cut(s) 203
BfaI CTAG 2 cut(s) 555, 578
BfuAI ACCTGC 1 cut(s) 903
BisI GCNGC 7 cut(s) 637, 640, 825, 828, 831, 834, 963
BlsI GCNGC 7 cut(s) 638, 641, 826, 829, 832, 835, 964
BmcAI AGTACT 2 cut(s) 457, 614
BmeT110I CYCGRG 1 cut(s) 459
BmgBI CACGTC 1 cut(s) 724
BmiI GGNNCC 1 cut(s) 605
BmsI GCATC 4 cut(s) 187, 790, 811, 876
BoxI GACNNNNGTC 1 cut(s) 1034
BpiI GAAGAC 2 cut(s) 285, 786
Bpu14I TTCGAA 1 cut(s) 618
BpuEI CTTGAG 2 cut(s) 173, 759
BsaHI GRCGYC 1 cut(s) 381
BsaI GGTCTC 1 cut(s) 203
BsaJI CCNNGG 2 cut(s) 57, 542
Bse1I ACTGG 1 cut(s) 1025
Bse21I CCTNAGG 1 cut(s) 789
BseDI CCNNGG 2 cut(s) 57, 542
BseGI GGATG 2 cut(s) 799, 874
BseMII CTCAG 2 cut(s) 780, 905
BseNI ACTGG 1 cut(s) 1025
BseRI GAGGAG 1 cut(s) 1005
BseX3I CGGCCG 1 cut(s) 637
BseXI GCAGC 5 cut(s) 811, 814, 817, 820, 949
BsgI GTGCAG 3 cut(s) 31, 73, 785
Bsh1285I CGRYCG 1 cut(s) 640
BshFI GGCC 2 cut(s) 240, 639
BshNI GGYRCC 1 cut(s) 603
BsiEI CGRYCG 1 cut(s) 640
BsiHKCI CYCGRG 1 cut(s) 459
BsmAI GTCTC 1 cut(s) 203
BsnI GGCC 2 cut(s) 240, 639
Bso31I GGTCTC 1 cut(s) 203
BsoBI CYCGRG 1 cut(s) 459
Bsp119I TTCGAA 1 cut(s) 618
Bsp143I GATC 1 cut(s) 906
Bsp19I CCATGG 1 cut(s) 57
BspACI CCGC 4 cut(s) 494, 503, 636, 640
BspANI GGCC 2 cut(s) 240, 639
BspCNI CTCAG 2 cut(s) 781, 904
BspLI GGNNCC 1 cut(s) 605
BspMI ACCTGC 1 cut(s) 903
BspQI GCTCTTC 1 cut(s) 738
BspT104I TTCGAA 1 cut(s) 618
BspT107I GGYRCC 1 cut(s) 603
BspTNI GGTCTC 1 cut(s) 203
BsrI ACTGG 1 cut(s) 1025
BssECI CCNNGG 2 cut(s) 57, 542
BssMI GATC 1 cut(s) 906
BssNI GRCGYC 1 cut(s) 381
BssSI CACGAG 1 cut(s) 67
BssT1I CCWWGG 2 cut(s) 57, 542
Bst2BI CACGAG 1 cut(s) 67
Bst4CI ACNGT 2 cut(s) 9, 377
Bst6I CTCTTC 2 cut(s) 738, 1023
BstACI GRCGYC 1 cut(s) 381
BstAPI GCANNNNNTGC 1 cut(s) 1004
BstBI TTCGAA 1 cut(s) 618
BstC8I GCNNGC 2 cut(s) 267, 539
BstDEI CTNAG 2 cut(s) 789, 891
BstDSI CCRYGG 1 cut(s) 57
BstF5I GGATG 2 cut(s) 799, 874
BstKTI GATC 1 cut(s) 909
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 1 cut(s) 906
BstMCI CGRYCG 1 cut(s) 640
BstMWI GCNNNNNNNGC 6 cut(s) 18, 286, 502, 830, 833, 1004
BstNSI RCATGY 3 cut(s) 150, 157, 541
BstPAI GACNNNNGTC 1 cut(s) 1034
BstV1I GCAGC 5 cut(s) 811, 814, 817, 820, 949
BstV2I GAAGAC 2 cut(s) 285, 786
BstZI CGGCCG 1 cut(s) 637
Bsu36I CCTNAGG 1 cut(s) 789
BsuRI GGCC 2 cut(s) 240, 639
BtgI CCRYGG 1 cut(s) 57
BtgZI GCGATG 1 cut(s) 261
BtrI CACGTC 1 cut(s) 724
BtsCI GGATG 2 cut(s) 799, 874
BtsI GCAGTG 3 cut(s) 19, 90, 536
BtsIMutI CAGTG 5 cut(s) 19, 90, 382, 536, 1032
BveI ACCTGC 1 cut(s) 903
Cac8I GCNNGC 2 cut(s) 267, 539
CaiI CAGNNNCTG 1 cut(s) 1031
CciNI GCGGCCGC 1 cut(s) 637
CseI GACGC 2 cut(s) 184, 370
Csp6I GTAC 2 cut(s) 456, 613
CviAII CATG 8 cut(s) 58, 147, 154, 236, 391, 538, 608, 974
CviQI GTAC 2 cut(s) 456, 613
DdeI CTNAG 2 cut(s) 789, 891
DpnI GATC 1 cut(s) 908
DpnII GATC 1 cut(s) 906
DrdI GACNNNNNNGTC 1 cut(s) 380
DseDI GACNNNNNNGTC 1 cut(s) 380
EaeI YGGCCR 2 cut(s) 238, 637
EagI CGGCCG 1 cut(s) 637
Eam1104I CTCTTC 2 cut(s) 738, 1023
EarI CTCTTC 2 cut(s) 738, 1023
EclXI CGGCCG 1 cut(s) 637
Eco130I CCWWGG 2 cut(s) 57, 542
Eco31I GGTCTC 1 cut(s) 203
Eco52I CGGCCG 1 cut(s) 637
Eco57I CTGAAG 1 cut(s) 993
Eco81I CCTNAGG 1 cut(s) 789
Eco88I CYCGRG 1 cut(s) 459
EcoT14I CCWWGG 2 cut(s) 57, 542
ErhI CCWWGG 2 cut(s) 57, 542
FaeI CATG 8 cut(s) 61, 150, 157, 239, 394, 541, 611, 977
FatI CATG 8 cut(s) 57, 146, 153, 235, 390, 537, 607, 973
FauNDI CATATG 1 cut(s) 688
Fnu4HI GCNGC 7 cut(s) 637, 640, 825, 828, 831, 834, 963
FokI GGATG 2 cut(s) 806, 881
Fsp4HI GCNGC 7 cut(s) 637, 640, 825, 828, 831, 834, 963
FspBI CTAG 2 cut(s) 555, 578
GluI GCNGC 7 cut(s) 637, 640, 825, 828, 831, 834, 963
HaeIII GGCC 2 cut(s) 240, 639
HgaI GACGC 2 cut(s) 184, 370
Hin1I GRCGYC 1 cut(s) 381
Hin1II CATG 8 cut(s) 61, 150, 157, 239, 394, 541, 611, 977
HincII GTYRAC 1 cut(s) 144
HindII GTYRAC 1 cut(s) 144
HindIII AAGCTT 1 cut(s) 653
HinfI GANTC 3 cut(s) 170, 547, 701
HphI GGTGA 1 cut(s) 487
Hpy166II GTNNAC 4 cut(s) 144, 250, 339, 713
Hpy188I TCNGA 5 cut(s) 229, 368, 552, 585, 904
Hpy188III TCNNGA 4 cut(s) 67, 665, 776, 788
Hpy8I GTNNAC 4 cut(s) 144, 250, 339, 713
Hpy99I CGWCG 4 cut(s) 178, 337, 386, 410
HpyAV CCTTC 2 cut(s) 69, 567
HpyCH4III ACNGT 2 cut(s) 9, 377
HpyCH4IV ACGT 3 cut(s) 628, 723, 762
HpyCH4V TGCA 8 cut(s) 12, 90, 157, 529, 766, 879, 965, 998
HpyF10VI GCNNNNNNNGC 6 cut(s) 18, 286, 502, 830, 833, 1004
HpyF3I CTNAG 2 cut(s) 789, 891
HpySE526I ACGT 3 cut(s) 628, 723, 762
Hsp92I GRCGYC 1 cut(s) 381
Hsp92II CATG 8 cut(s) 61, 150, 157, 239, 394, 541, 611, 977
Kzo9I GATC 1 cut(s) 906
LguI GCTCTTC 1 cut(s) 738
LmnI GCTCC 1 cut(s) 1018
LpnPI CCDG 7 cut(s) 445, 494, 650, 801, 898, 1017, 1038
Lsp1109I GCAGC 5 cut(s) 811, 814, 817, 820, 949
LweI GCATC 4 cut(s) 187, 790, 811, 876
MaeI CTAG 2 cut(s) 555, 578
MaeII ACGT 3 cut(s) 628, 723, 762
MaeIII GTNAC 6 cut(s) 149, 437, 629, 694, 894, 1027
MalI GATC 1 cut(s) 908
MboI GATC 1 cut(s) 906
MboII GAAGA 7 cut(s) 276, 285, 460, 755, 791, 827, 1010
MlsI TGGCCA 1 cut(s) 240
MluCI AATT 3 cut(s) 108, 210, 485
MluNI TGGCCA 1 cut(s) 240
Mox20I TGGCCA 1 cut(s) 240
MscI TGGCCA 1 cut(s) 240
MseI TTAA 2 cut(s) 39, 416
MslI CAYNNNNRTG 1 cut(s) 334
Msp20I TGGCCA 1 cut(s) 240
MspA1I CMGCKG 2 cut(s) 636, 962
MwoI GCNNNNNNNGC 6 cut(s) 18, 286, 502, 830, 833, 1004
NcoI CCATGG 1 cut(s) 57
NdeI CATATG 1 cut(s) 688
NdeII GATC 1 cut(s) 906
NlaIII CATG 8 cut(s) 61, 150, 157, 239, 394, 541, 611, 977
NlaIV GGNNCC 1 cut(s) 605
NmuCI GTSAC 5 cut(s) 149, 629, 694, 894, 1027
NotI GCGGCCGC 1 cut(s) 637
NspI RCATGY 3 cut(s) 150, 157, 541
NspV TTCGAA 1 cut(s) 618
PaeI GCATGC 1 cut(s) 541
PaeR7I CTCGAG 1 cut(s) 459
PaqCI CACCTGC 1 cut(s) 903
PciI ACATGT 1 cut(s) 146
PciSI GCTCTTC 1 cut(s) 738
PcsI WCGNNNNNNNCGW 1 cut(s) 341
PfeI GAWTC 3 cut(s) 170, 547, 701
PflFI GACNNNGTC 1 cut(s) 343
PkrI GCNGC 7 cut(s) 638, 641, 826, 829, 832, 835, 964
PscI ACATGT 1 cut(s) 146
PshAI GACNNNNGTC 1 cut(s) 1034
PsiI TTATAA 1 cut(s) 99
PspN4I GGNNCC 1 cut(s) 605
PspXI VCTCGAGB 1 cut(s) 459
PstNI CAGNNNCTG 1 cut(s) 1031
PsyI GACNNNGTC 1 cut(s) 343
PvuII CAGCTG 1 cut(s) 962
RsaI GTAC 2 cut(s) 457, 614
RsaNI GTAC 2 cut(s) 456, 613
RseI CAYNNNNRTG 1 cut(s) 334
SapI GCTCTTC 1 cut(s) 738
SaqAI TTAA 2 cut(s) 39, 416
SatI GCNGC 7 cut(s) 637, 640, 825, 828, 831, 834, 963
Sau3AI GATC 1 cut(s) 906
ScaI AGTACT 2 cut(s) 457, 614
SfaNI GCATC 4 cut(s) 187, 790, 811, 876
Sfr274I CTCGAG 1 cut(s) 459
SfuI TTCGAA 1 cut(s) 618
SlaI CTCGAG 1 cut(s) 459
SmiMI CAYNNNNRTG 1 cut(s) 334
SmlI CTYRAG 3 cut(s) 188, 459, 774
SmoI CTYRAG 3 cut(s) 188, 459, 774
SphI GCATGC 1 cut(s) 541
Sse9I AATT 3 cut(s) 108, 210, 485
SsiI CCGC 4 cut(s) 494, 503, 636, 640
SspMI CTAG 2 cut(s) 555, 578
StyI CCWWGG 2 cut(s) 57, 542
TaaI ACNGT 2 cut(s) 9, 377
TaiI ACGT 3 cut(s) 631, 726, 765
TaqI TCGA 5 cut(s) 137, 173, 460, 618, 884
TasI AATT 3 cut(s) 108, 210, 485
TatI WGTACW 2 cut(s) 455, 612
TauI GCSGC 2 cut(s) 639, 642
TfiI GAWTC 3 cut(s) 170, 547, 701
Tru1I TTAA 2 cut(s) 39, 416
Tru9I TTAA 2 cut(s) 39, 416
TscAI CASTG 5 cut(s) 19, 97, 382, 536, 1032
TseFI GTSAC 5 cut(s) 149, 629, 694, 894, 1027
TseI GCWGC 5 cut(s) 824, 827, 830, 833, 962
Tsp45I GTSAC 5 cut(s) 149, 629, 694, 894, 1027
TspDTI ATGAA 5 cut(s) 17, 756, 864, 885, 990
TspRI CASTG 5 cut(s) 19, 97, 382, 536, 1032
Tth111I GACNNNGTC 1 cut(s) 343
XapI RAATTY 1 cut(s) 485
XceI RCATGY 3 cut(s) 150, 157, 541
XhoI CTCGAG 1 cut(s) 459
XspI CTAG 2 cut(s) 555, 578
ZrmI AGTACT 2 cut(s) 457, 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.