Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002468

Physical Location & Seq

Genomic Coordinates Reverse (-)

45147535 .. 45149977

Gene Structure 2443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G552400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGATCTCCGATGACGACTTTTCTCCACCCACCTCCCCCTCTCTATTAACGCCCGGGGACTACATTGGCATGCAGTCCTGCGTCGACGTTCTGACTGACGAAGAATTGGGTTTCGGTCGCCTCCGTCATAAACCTAACCGCCGTTTTAGCAAGAGAGAGGAAAGATCGTTAAGGTGGGTACCCAAGAAGATGAAGATGAAAGACTATATGGAGGTTCCACCTCCCATCCCGTCGCTGGCGCGAACGGAGAATCTTCCTTCTCACATGCCTTGGATTTTGAAGAGGCATTACACGACCGACGGACGGTTGATTTTGACTGAGGAGAAGGTGAGGCACCATGAGTACTTTAGGGCACACAGATCCAACGGCCGTCTTAGGCTGCAGCTTGTCCCGCTTGACGACGACGTTTTGGTTCCACCAGTTGCTTGTGATGGTGATGATGATGATGATGATGATGATGATGAGGATGATGATGAGTACTGTAGTGAGTATGATGACAATATAGATGCTTATGATGATTATGACGACGAAGACAATGATGATGCTTATGGCTATGATTATGATGGCCATGTTGATGATGATGATGATGATGATGTTGTTGAAGAAATAATTAATATCGTTAATACATCAAATGGGTTAGCAGGGAAATGCTTGAATATCAACAGTGTGGGAACAAGGCCACCGTCTATCTTGGATGTACCAGTTCCACCGATCAGATTGATTAAGGCTACTACAAATGGACCAAGAAAAGGTTTTCTGGGGCAAGCTGGCTTTGGTGGTCTCTTTCGCAACCATGCCGGTCGTGCTGTCAGTGCTGTTTGTGAGCCAATCGGTATCTCCGCTGCGTATGTGACTAAACTTGCAGTCCTCATGATCGCTATAATCACAGCTTGGGAGAAGGGCTGGTTTCGTTATGGTTGGAAACAGATTCTCAGTTGGTCATACATTTTTACCCTAAACCCCATTCTGCTCCTTGGTCTTTGTGTCCTCAGCGGAGACATTGTCTTCATCGAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAF

Protein Analysis

340

Amino Acids

38.33

Weight (kDa)

4.5

Isoelectric Point (pI)

60.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22110 AT1G22110 AT1G22110 AT1G77932
fragaria_vesca	FvH4_5g38140 FvH4_5g38160 FvH4_5g38160 FvH4_5g38160
malus_domestica	MD08G1176500.v1.1 MD08G1219800.v1.1 MD15G1363200.v1.1 MD15G1408400.v1.1 MD15G1409900.v1.1
prunus_persica	Prupe.1G096600_v2.0.a1 Prupe.1G510300_v2.0.a1 Prupe.1G510900_v2.0.a1 Prupe.1G552400_v2.0.a1
pyrus_communis	pycom08g19080 pycom15g32490
rosa_chinensis	RchiOBHm_Chr7g0240121
rosa_laevigata	RLG00000000700 RLG00000000701
rosa_multiflora	Rmu_sc0005008.1_g000021 Rmu_sc0005008.1_g000024
rosa_roxburghii	Rroxscaffold_3G00220390 Rroxscaffold_3G00220400
rosa_rugosa	Rorug04G0113200 Rorug07G0333300 Rorug07G0333500 Rorug07G0333600 Rorug07G0333700 Rorug07G0333800
rosa_samantha	Rh7AG487000 Rh7AG487200 Rh7BG459700 Rh7CG503800 Rh7CG503900 Rh7DG472100 Rh7DG472200
rosa_wichuraiana	Rw7G040810 Rw7G040820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	178
AccB1I	GGYRCC	2 cut(s)	178, 333
AccI	GTMKAC	1 cut(s)	84
AccII	CGCG	1 cut(s)	241
AciI	CCGC	4 cut(s)	139, 392, 840, 993
AclWI	GGATC	1 cut(s)	354
AcoI	YGGCCR	2 cut(s)	367, 565
AfaI	GTAC	4 cut(s)	180, 344, 479, 699
AfiI	CCNNNNNNNGG	3 cut(s)	235, 303, 749
AgsI	TTSAA	3 cut(s)	280, 602, 655
AluBI	AGCT	3 cut(s)	385, 767, 890
AluI	AGCT	3 cut(s)	385, 767, 890
Alw26I	GTCTC	2 cut(s)	785, 990
AlwI	GGATC	1 cut(s)	354
Ama87I	CYCGRG	1 cut(s)	53
AoxI	GGCC	3 cut(s)	367, 565, 677
ApeKI	GCWGC	3 cut(s)	379, 382, 842
AseI	ATTAAT	1 cut(s)	612
Asp718I	GGTACC	1 cut(s)	178
AspLEI	GCGC	1 cut(s)	241
AspS9I	GGNCC	1 cut(s)	740
AsuC2I	CCSGG	2 cut(s)	54, 55
AsuHPI	GGTGA	2 cut(s)	340, 446
AvaI	CYCGRG	1 cut(s)	53
AvaII	GGWCC	1 cut(s)	740
BaeGI	GKGCMC	1 cut(s)	355
BalI	TGGCCA	1 cut(s)	567
BanI	GGYRCC	2 cut(s)	178, 333
BarI	GAAGNNNNNNTAC	2 cut(s)	272, 304
BbsI	GAAGAC	2 cut(s)	537, 997
BbvCI	CCTCAGC	1 cut(s)	989
BbvI	GCAGC	3 cut(s)	366, 394, 829
BccI	CCATC	3 cut(s)	233, 425, 557
BceAI	ACGGC	3 cut(s)	126, 354, 382
BcnI	CCSGG	2 cut(s)	54, 55
BcoDI	GTCTC	2 cut(s)	785, 990
BfmI	CTRYAG	2 cut(s)	380, 481
BisI	GCNGC	3 cut(s)	380, 383, 843
BlsI	GCNGC	3 cut(s)	381, 384, 844
BmcAI	AGTACT	2 cut(s)	344, 479
Bme1390I	CCNGG	2 cut(s)	54, 55
Bme18I	GGWCC	1 cut(s)	740
BmeT110I	CYCGRG	1 cut(s)	53
BmgT120I	GGNCC	1 cut(s)	740
BmiI	GGNNCC	4 cut(s)	180, 216, 335, 414
BmrFI	CCNGG	2 cut(s)	54, 55
BmsI	GCATC	2 cut(s)	496, 532
BpiI	GAAGAC	2 cut(s)	537, 997
Bpu10I	CCTNAGC	1 cut(s)	989
BpuMI	CCSGG	2 cut(s)	54, 55
BsaI	GGTCTC	1 cut(s)	785
BsaJI	CCNNGG	4 cut(s)	53, 54, 269, 973
BsaXI	ACNNNNNCTCC	2 cut(s)	987, 1017
Bsc4I	CCNNNNNNNGG	3 cut(s)	235, 303, 749
Bse118I	RCCGGY	1 cut(s)	797
Bse1I	ACTGG	2 cut(s)	419, 701
BseDI	CCNNGG	4 cut(s)	53, 54, 269, 973
BseGI	GGATG	3 cut(s)	225, 472, 700
BseLI	CCNNNNNNNGG	3 cut(s)	235, 303, 749
BseMII	CTCAG	3 cut(s)	309, 946, 1003
BseNI	ACTGG	2 cut(s)	419, 701
BseRI	GAGGAG	1 cut(s)	335
BseSI	GKGCMC	1 cut(s)	355
BseX3I	CGGCCG	1 cut(s)	367
BseXI	GCAGC	3 cut(s)	366, 394, 829
Bsh1236I	CGCG	1 cut(s)	241
Bsh1285I	CGRYCG	4 cut(s)	118, 297, 370, 802
BshFI	GGCC	3 cut(s)	369, 567, 679
BshNI	GGYRCC	2 cut(s)	178, 333
BsiEI	CGRYCG	4 cut(s)	118, 297, 370, 802
BsiHKCI	CYCGRG	1 cut(s)	53
BsiSI	CCGG	2 cut(s)	54, 798
BslFI	GGGAC	2 cut(s)	71, 374
BslI	CCNNNNNNNGG	3 cut(s)	235, 303, 749
BsmAI	GTCTC	2 cut(s)	785, 990
BsmFI	GGGAC	2 cut(s)	71, 374
BsnI	GGCC	3 cut(s)	369, 567, 679
Bso31I	GGTCTC	1 cut(s)	785
BsoBI	CYCGRG	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	355
Bsp143I	GATC	5 cut(s)	3, 164, 359, 711, 873
BspACI	CCGC	4 cut(s)	139, 392, 840, 993
BspANI	GGCC	3 cut(s)	369, 567, 679
BspCNI	CTCAG	3 cut(s)	310, 945, 1002
BspFNI	CGCG	1 cut(s)	241
BspHI	TCATGA	1 cut(s)	870
BspLI	GGNNCC	4 cut(s)	180, 216, 335, 414
BspMAI	CTGCAG	1 cut(s)	384
BspPI	GGATC	1 cut(s)	354
BspT107I	GGYRCC	2 cut(s)	178, 333
BspTNI	GGTCTC	1 cut(s)	785
BsrFI	RCCGGY	1 cut(s)	797
BsrI	ACTGG	2 cut(s)	419, 701
BssAI	RCCGGY	1 cut(s)	797
BssECI	CCNNGG	4 cut(s)	53, 54, 269, 973
BssMI	GATC	5 cut(s)	3, 164, 359, 711, 873
BssT1I	CCWWGG	2 cut(s)	269, 973
Bst4CI	ACNGT	4 cut(s)	306, 482, 665, 684
Bst6I	CTCTTC	1 cut(s)	275
BstC8I	GCNNGC	4 cut(s)	71, 237, 765, 769
BstDEI	CTNAG	4 cut(s)	318, 374, 932, 989
BstF5I	GGATG	3 cut(s)	225, 472, 700
BstFNI	CGCG	1 cut(s)	241
BstHHI	GCGC	1 cut(s)	241
BstKTI	GATC	5 cut(s)	6, 167, 362, 714, 876
BstMAI	GTCTC	2 cut(s)	785, 990
BstMBI	GATC	5 cut(s)	3, 164, 359, 711, 873
BstMCI	CGRYCG	4 cut(s)	118, 297, 370, 802
BstMWI	GCNNNNNNNGC	4 cut(s)	147, 391, 803, 812
BstNSI	RCATGY	2 cut(s)	73, 268
BstSCI	CCNGG	2 cut(s)	52, 53
BstSFI	CTRYAG	2 cut(s)	380, 481
BstSLI	GKGCMC	1 cut(s)	355
BstUI	CGCG	1 cut(s)	241
BstV1I	GCAGC	3 cut(s)	366, 394, 829
BstV2I	GAAGAC	2 cut(s)	537, 997
BstX2I	RGATCY	1 cut(s)	359
BstYI	RGATCY	1 cut(s)	359
BstZI	CGGCCG	1 cut(s)	367
BsuRI	GGCC	3 cut(s)	369, 567, 679
BtsCI	GGATG	3 cut(s)	225, 472, 700
BtsIMutI	CAGTG	2 cut(s)	670, 817
Cac8I	GCNNGC	4 cut(s)	71, 237, 765, 769
CciI	TCATGA	1 cut(s)	870
CfoI	GCGC	1 cut(s)	241
Cfr10I	RCCGGY	1 cut(s)	797
Cfr13I	GGNCC	1 cut(s)	740
Cfr9I	CCCGGG	1 cut(s)	53
CseI	GACGC	1 cut(s)	70
Csp6I	GTAC	4 cut(s)	179, 343, 478, 698
CviAII	CATG	6 cut(s)	70, 265, 338, 569, 794, 871
CviQI	GTAC	4 cut(s)	179, 343, 478, 698
DdeI	CTNAG	4 cut(s)	318, 374, 932, 989
DpnI	GATC	5 cut(s)	5, 166, 361, 713, 875
DpnII	GATC	5 cut(s)	3, 164, 359, 711, 873
EaeI	YGGCCR	2 cut(s)	367, 565
EagI	CGGCCG	1 cut(s)	367
Eam1104I	CTCTTC	1 cut(s)	275
EarI	CTCTTC	1 cut(s)	275
EclXI	CGGCCG	1 cut(s)	367
Eco130I	CCWWGG	2 cut(s)	269, 973
Eco31I	GGTCTC	1 cut(s)	785
Eco47I	GGWCC	1 cut(s)	740
Eco52I	CGGCCG	1 cut(s)	367
Eco88I	CYCGRG	1 cut(s)	53
EcoT14I	CCWWGG	2 cut(s)	269, 973
ErhI	CCWWGG	2 cut(s)	269, 973
FaeI	CATG	6 cut(s)	73, 268, 341, 572, 797, 874
FaqI	GGGAC	2 cut(s)	71, 374
FatI	CATG	6 cut(s)	69, 264, 337, 568, 793, 870
FauI	CCCGC	1 cut(s)	399
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	3 cut(s)	380, 383, 843
FokI	GGATG	3 cut(s)	212, 479, 707
Fsp4HI	GCNGC	3 cut(s)	380, 383, 843
GlaI	GCGC	1 cut(s)	240
GluI	GCNGC	3 cut(s)	380, 383, 843
HaeIII	GGCC	3 cut(s)	369, 567, 679
HapII	CCGG	2 cut(s)	54, 798
HgaI	GACGC	1 cut(s)	70
HhaI	GCGC	1 cut(s)	241
Hin1II	CATG	6 cut(s)	73, 268, 341, 572, 797, 874
Hin6I	GCGC	1 cut(s)	239
HinP1I	GCGC	1 cut(s)	239
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	2 cut(s)	250, 928
HpaII	CCGG	2 cut(s)	54, 798
HphI	GGTGA	2 cut(s)	340, 446
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	3 cut(s)	10, 93, 716
Hpy188III	TCNNGA	1 cut(s)	871
Hpy8I	GTNNAC	1 cut(s)	85
Hpy99I	CGWCG	7 cut(s)	86, 89, 235, 302, 404, 407, 530
HpyAV	CCTTC	3 cut(s)	267, 319, 892
HpyCH4III	ACNGT	4 cut(s)	306, 482, 665, 684
HpyCH4IV	ACGT	2 cut(s)	87, 405
HpyCH4V	TGCA	3 cut(s)	73, 382, 863
HpyF10VI	GCNNNNNNNGC	4 cut(s)	147, 391, 803, 812
HpyF3I	CTNAG	4 cut(s)	318, 374, 932, 989
HpySE526I	ACGT	2 cut(s)	87, 405
Hsp92II	CATG	6 cut(s)	73, 268, 341, 572, 797, 874
HspAI	GCGC	1 cut(s)	239
KpnI	GGTACC	1 cut(s)	182
Kzo9I	GATC	5 cut(s)	3, 164, 359, 711, 873
LmnI	GCTCC	1 cut(s)	975
Lsp1109I	GCAGC	3 cut(s)	366, 394, 829
LweI	GCATC	2 cut(s)	496, 532
MaeII	ACGT	2 cut(s)	87, 405
MaeIII	GTNAC	1 cut(s)	850
MalI	GATC	5 cut(s)	5, 166, 361, 713, 875
MboI	GATC	5 cut(s)	3, 164, 359, 711, 873
MboII	GAAGA	8 cut(s)	113, 199, 205, 245, 292, 542, 614, 997
MflI	RGATCY	1 cut(s)	359
MhlI	GDGCHC	1 cut(s)	355
MlsI	TGGCCA	1 cut(s)	567
MluCI	AATT	2 cut(s)	104, 609
MluNI	TGGCCA	1 cut(s)	567
MmeI	TCCRAC	2 cut(s)	387, 899
Mox20I	TGGCCA	1 cut(s)	567
MscI	TGGCCA	1 cut(s)	567
MseI	TTAA	5 cut(s)	47, 170, 612, 621, 723
MslI	CAYNNNNRTG	2 cut(s)	68, 573
Msp20I	TGGCCA	1 cut(s)	567
MspA1I	CMGCKG	2 cut(s)	842, 993
MspI	CCGG	2 cut(s)	54, 798
MspR9I	CCNGG	2 cut(s)	54, 55
MvnI	CGCG	1 cut(s)	241
MwoI	GCNNNNNNNGC	4 cut(s)	147, 391, 803, 812
NciI	CCSGG	2 cut(s)	54, 55
NdeII	GATC	5 cut(s)	3, 164, 359, 711, 873
NlaIII	CATG	6 cut(s)	73, 268, 341, 572, 797, 874
NlaIV	GGNNCC	4 cut(s)	180, 216, 335, 414
NmuCI	GTSAC	1 cut(s)	850
NspI	RCATGY	2 cut(s)	73, 268
PaeI	GCATGC	1 cut(s)	73
PagI	TCATGA	1 cut(s)	870
PfeI	GAWTC	2 cut(s)	250, 928
PflFI	GACNNNGTC	1 cut(s)	1001
PkrI	GCNGC	3 cut(s)	381, 384, 844
PshBI	ATTAAT	1 cut(s)	612
PspN4I	GGNNCC	4 cut(s)	180, 216, 335, 414
PspPI	GGNCC	1 cut(s)	740
PstI	CTGCAG	1 cut(s)	384
PsuI	RGATCY	1 cut(s)	359
PsyI	GACNNNGTC	1 cut(s)	1001
RsaI	GTAC	4 cut(s)	180, 344, 479, 699
RsaNI	GTAC	4 cut(s)	179, 343, 478, 698
RseI	CAYNNNNRTG	2 cut(s)	68, 573
SalI	GTCGAC	1 cut(s)	83
SaqAI	TTAA	5 cut(s)	47, 170, 612, 621, 723
SatI	GCNGC	3 cut(s)	380, 383, 843
Sau3AI	GATC	5 cut(s)	3, 164, 359, 711, 873
Sau96I	GGNCC	1 cut(s)	740
ScaI	AGTACT	2 cut(s)	344, 479
ScrFI	CCNGG	2 cut(s)	54, 55
SduI	GDGCHC	1 cut(s)	355
SfaNI	GCATC	2 cut(s)	496, 532
SfcI	CTRYAG	2 cut(s)	380, 481
SgrDI	CGTCGACG	1 cut(s)	83
SinI	GGWCC	1 cut(s)	740
SmaI	CCCGGG	1 cut(s)	55
SmiMI	CAYNNNNRTG	2 cut(s)	68, 573
SphI	GCATGC	1 cut(s)	73
Sse9I	AATT	2 cut(s)	104, 609
SsiI	CCGC	4 cut(s)	139, 392, 840, 993
StyD4I	CCNGG	2 cut(s)	52, 53
StyI	CCWWGG	2 cut(s)	269, 973
TaaI	ACNGT	4 cut(s)	306, 482, 665, 684
TaiI	ACGT	2 cut(s)	90, 408
TaqI	TCGA	2 cut(s)	84, 1011
TaqII	GACCGA	2 cut(s)	104, 311
TasI	AATT	2 cut(s)	104, 609
TatI	WGTACW	2 cut(s)	342, 477
TfiI	GAWTC	2 cut(s)	250, 928
Tru1I	TTAA	5 cut(s)	47, 170, 612, 621, 723
Tru9I	TTAA	5 cut(s)	47, 170, 612, 621, 723
TscAI	CASTG	2 cut(s)	670, 817
TseFI	GTSAC	1 cut(s)	850
TseI	GCWGC	3 cut(s)	379, 382, 842
Tsp45I	GTSAC	1 cut(s)	850
TspDTI	ATGAA	3 cut(s)	206, 212, 997
TspGWI	ACGGA	3 cut(s)	113, 260, 315
TspMI	CCCGGG	1 cut(s)	53
TspRI	CASTG	2 cut(s)	670, 817
Tth111I	GACNNNGTC	1 cut(s)	1001
VpaK11BI	GGWCC	1 cut(s)	740
VspI	ATTAAT	1 cut(s)	612
XceI	RCATGY	2 cut(s)	73, 268
XcmI	CCANNNNNNNNNTGG	1 cut(s)	232
XmaI	CCCGGG	1 cut(s)	53
XmiI	GTMKAC	1 cut(s)	84
ZrmI	AGTACT	2 cut(s)	344, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.