MD08G1219800.v1.1

Fantastic Four meristem regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0002468
Physical Location & Seq
Forward (+)
28251429 .. 28255038
3610 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1219800.v1.1.491

Sequence Viewer

Length: 987 bp
ATGCAGATCCCCAATCCAAGGCGGATCACTAACAGTCCCATAGATTCTAGTTCATGCCAATCCCAATCCCAAATCCAATATTCTTCCTATCCTCTAGAATTTAGCATCAAGCCCCTCACAACTACTTTTGAACCCCATGAAAACCCTTCTCTTAGTAGAAGCTGCTCTTCCGCCTCCATTGATACGATGATCTCCGACTTGTTTTCCTCGACCTCCTCGTCCTCCGCCTCCTTCGACTCACTATTAATGTCTGGGGACGACATTGGCATGGTCCTCTTTCATCATGATTGTTATAGTCAGAGAAAAGAAAGGTTATGTTGGGCGCCGGAGAAGGAGAAGAAGAGAACTTATGAAGAACTTCCACCTCCACTTTCGTTGCTGGCGCGTACGGAGAATCTGCCTTCTCACATGCCTTGGGTTTTGAAGAGGCATTACACCACCGATGGACGGTTGATTTTGACGGAGGAGAAGGTTCGGCACCATGAGTACTTCAGGGCCCATAGATCCAATGGGCGCCTTAGACTACAGCTTGTCCCTCTTGACGGCCAGGTTTTGGTTCCGCCAGTCGTTTGTTGTGATGATGATGATCATGATGAGGAGGAGGTGGATGATTATGATGGGTACTATTGTGACAATCATGATGTGCTCTACGATGACAATCTCGATGCTTATGATGGTGACGATGATGCTTATGATTACGATTACGATTGTCATTGTGATTATGATTATGATTATGACAATGACTGCGATGGTTTTTGTCGTCATGGTGGTGTTGAACAAACAATTAAGGTTGTCAATTCATCAACTGCGTCAGCTGGGAAGTGTCGCAATATTAACACTACTGTGAGAACAAAGTCATCGTGCATCGTGGGAGTGCTAGCGCCAGCGATCAGATGTGTGAAGGGCAATACAAATGGATCAAGGAAAGGCTTTCTGGGGCAAGCTGGATTTGGCGGTCTATTTCGTGACCATGCTGGTCAAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

329

Amino Acids

36.92

Weight (kDa)

4.94

Isoelectric Point (pI)

60.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 119 - 177 9.3e-20 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 217
AccB1I GGYRCC 3 cut(s) 322, 477, 513
AccB7I CCANNNNNTGG 1 cut(s) 553
AccII CGCG 1 cut(s) 385
AciI CCGC 5 cut(s) 22, 171, 225, 560, 954
AclWI GGATC 3 cut(s) 32, 498, 925
AcoI YGGCCR 1 cut(s) 544
AcsI RAATTY 1 cut(s) 98
AcuI CTGAAG 1 cut(s) 475
AcyI GRCGYC 2 cut(s) 323, 514
AfaI GTAC 3 cut(s) 388, 488, 623
AfiI CCNNNNNNNGG 4 cut(s) 18, 447, 542, 553
AgsI TTSAA 3 cut(s) 131, 424, 776
AjnI CCWGG 1 cut(s) 546
AleI CACNNNNGTG 1 cut(s) 842
AluBI AGCT 4 cut(s) 162, 529, 815, 944
AluI AGCT 4 cut(s) 162, 529, 815, 944
Alw21I GWGCWC 1 cut(s) 648
AlwI GGATC 3 cut(s) 32, 498, 925
AoxI GGCC 2 cut(s) 495, 544
ApaI GGGCCC 1 cut(s) 499
ApeKI GCWGC 1 cut(s) 162
ApoI RAATTY 1 cut(s) 98
AseI ATTAAT 1 cut(s) 245
Asp700I GAANNNNTTC 1 cut(s) 357
AspLEI GCGC 4 cut(s) 325, 385, 516, 883
AspS9I GGNCC 3 cut(s) 271, 495, 496
AsuHPI GGTGA 1 cut(s) 689
AsuNHI GCTAGC 1 cut(s) 877
AvaII GGWCC 1 cut(s) 271
BaeGI GKGCMC 1 cut(s) 499
BaeI ACNNNNGTAYC 2 cut(s) 613, 646
BanI GGYRCC 3 cut(s) 322, 477, 513
BanII GRGCYC 1 cut(s) 499
BarI GAAGNNNNNNTAC 2 cut(s) 416, 448
Bbv12I GWGCWC 1 cut(s) 648
BbvI GCAGC 1 cut(s) 149
BccI CCATC 4 cut(s) 437, 611, 668, 743
BceAI ACGGC 1 cut(s) 559
BciT130I CCWGG 1 cut(s) 548
BclI TGATCA 1 cut(s) 586
BfaI CTAG 3 cut(s) 48, 95, 878
BfmI CTRYAG 1 cut(s) 524
BfoI RGCGCY 3 cut(s) 326, 517, 884
BisI GCNGC 1 cut(s) 163
BlsI GCNGC 1 cut(s) 164
BmcAI AGTACT 1 cut(s) 488
Bme1390I CCNGG 1 cut(s) 548
Bme18I GGWCC 1 cut(s) 271
BmgT120I GGNCC 3 cut(s) 271, 495, 496
BmiI GGNNCC 5 cut(s) 324, 479, 497, 515, 558
BmrFI CCNGG 1 cut(s) 548
BmsI GCATC 4 cut(s) 114, 655, 676, 873
BmtI GCTAGC 1 cut(s) 881
BsaBI GATNNNNATC 2 cut(s) 585, 657
BsaHI GRCGYC 2 cut(s) 323, 514
BsaJI CCNNGG 2 cut(s) 17, 413
Bsc4I CCNNNNNNNGG 4 cut(s) 18, 447, 542, 553
Bse1I ACTGG 1 cut(s) 563
Bse8I GATNNNNATC 2 cut(s) 585, 657
BseBI CCWGG 1 cut(s) 548
BseDI CCNNGG 2 cut(s) 17, 413
BseGI GGATG 1 cut(s) 613
BseJI GATNNNNATC 2 cut(s) 585, 657
BseLI CCNNNNNNNGG 4 cut(s) 18, 447, 542, 553
BseNI ACTGG 1 cut(s) 563
BseRI GAGGAG 4 cut(s) 205, 479, 611, 614
BseSI GKGCMC 1 cut(s) 499
BseXI GCAGC 1 cut(s) 149
BseYI CCCAGC 1 cut(s) 815
Bsh1236I CGCG 1 cut(s) 385
BshFI GGCC 2 cut(s) 497, 546
BshNI GGYRCC 3 cut(s) 322, 477, 513
BsiHKAI GWGCWC 1 cut(s) 648
BsiSI CCGG 1 cut(s) 326
BsiWI CGTACG 1 cut(s) 386
BslFI GGGAC 3 cut(s) 21, 269, 518
BslI CCNNNNNNNGG 4 cut(s) 18, 447, 542, 553
BsmFI GGGAC 3 cut(s) 21, 269, 518
BsnI GGCC 2 cut(s) 497, 546
Bsp120I GGGCCC 1 cut(s) 495
Bsp1286I GDGCHC 2 cut(s) 499, 648
Bsp143I GATC 7 cut(s) 6, 24, 189, 503, 586, 888, 917
BspACI CCGC 5 cut(s) 22, 171, 225, 560, 954
BspANI GGCC 2 cut(s) 497, 546
BspFNI CGCG 1 cut(s) 385
BspHI TCATGA 3 cut(s) 283, 589, 637
BspLI GGNNCC 5 cut(s) 324, 479, 497, 515, 558
BspOI GCTAGC 1 cut(s) 881
BspPI GGATC 3 cut(s) 32, 498, 925
BspQI GCTCTTC 1 cut(s) 172
BspT107I GGYRCC 3 cut(s) 322, 477, 513
BsrI ACTGG 1 cut(s) 563
BssECI CCNNGG 2 cut(s) 17, 413
BssMI GATC 7 cut(s) 6, 24, 189, 503, 586, 888, 917
BssNI GRCGYC 2 cut(s) 323, 514
BssT1I CCWWGG 2 cut(s) 17, 413
Bst2UI CCWGG 1 cut(s) 548
Bst4CI ACNGT 3 cut(s) 35, 450, 844
Bst6I CTCTTC 3 cut(s) 172, 335, 419
BstACI GRCGYC 2 cut(s) 323, 514
BstC8I GCNNGC 4 cut(s) 381, 879, 885, 942
BstDEI CTNAG 2 cut(s) 152, 518
BstF5I GGATG 1 cut(s) 613
BstFNI CGCG 1 cut(s) 385
BstH2I RGCGCY 3 cut(s) 326, 517, 884
BstHHI GCGC 4 cut(s) 325, 385, 516, 883
BstKTI GATC 7 cut(s) 9, 27, 192, 506, 589, 891, 920
BstMBI GATC 7 cut(s) 6, 24, 189, 503, 586, 888, 917
BstNI CCWGG 1 cut(s) 548
BstNSI RCATGY 1 cut(s) 412
BstSCI CCNGG 1 cut(s) 546
BstSFI CTRYAG 1 cut(s) 524
BstSLI GKGCMC 1 cut(s) 499
BstUI CGCG 1 cut(s) 385
BstV1I GCAGC 1 cut(s) 149
BstX2I RGATCY 2 cut(s) 6, 503
BstYI RGATCY 2 cut(s) 6, 503
BsuRI GGCC 2 cut(s) 497, 546
BtgZI GCGATG 1 cut(s) 762
BtsCI GGATG 1 cut(s) 613
Cac8I GCNNGC 4 cut(s) 381, 879, 885, 942
CciI TCATGA 3 cut(s) 283, 589, 637
CfoI GCGC 4 cut(s) 325, 385, 516, 883
Cfr13I GGNCC 3 cut(s) 271, 495, 496
CseI GACGC 1 cut(s) 798
Csp6I GTAC 3 cut(s) 387, 487, 622
CspCI CAANNNNNGTGG 2 cut(s) 357, 392
CviJI RGCY 9 cut(s) 112, 162, 497, 529, 546, 815, 930, 944, 984
CviKI_1 RGCY 9 cut(s) 112, 162, 497, 529, 546, 815, 930, 944, 984
CviQI GTAC 3 cut(s) 387, 487, 622
DdeI CTNAG 2 cut(s) 152, 518
DinI GGCGCC 2 cut(s) 324, 515
DpnI GATC 7 cut(s) 8, 26, 191, 505, 588, 890, 919
DpnII GATC 7 cut(s) 6, 24, 189, 503, 586, 888, 917
DrdI GACNNNNNNGTC 1 cut(s) 217
DseDI GACNNNNNNGTC 1 cut(s) 217
EaeI YGGCCR 1 cut(s) 544
Eam1104I CTCTTC 3 cut(s) 172, 335, 419
EarI CTCTTC 3 cut(s) 172, 335, 419
EciI GGCGGA 4 cut(s) 37, 160, 214, 549
Eco130I CCWWGG 2 cut(s) 17, 413
Eco24I GRGCYC 1 cut(s) 499
Eco47I GGWCC 1 cut(s) 271
Eco57I CTGAAG 1 cut(s) 475
EcoO109I RGGNCCY 1 cut(s) 495
EcoRII CCWGG 1 cut(s) 546
EcoT14I CCWWGG 2 cut(s) 17, 413
EcoT38I GRGCYC 1 cut(s) 499
EgeI GGCGCC 2 cut(s) 324, 515
EheI GGCGCC 2 cut(s) 324, 515
ErhI CCWWGG 2 cut(s) 17, 413
FalI AAGNNNNNCTT 2 cut(s) 151, 183
FaqI GGGAC 3 cut(s) 21, 269, 518
FbaI TGATCA 1 cut(s) 586
Fnu4HI GCNGC 1 cut(s) 163
FokI GGATG 1 cut(s) 620
FriOI GRGCYC 1 cut(s) 499
Fsp4HI GCNGC 1 cut(s) 163
FspBI CTAG 3 cut(s) 48, 95, 878
GlaI GCGC 4 cut(s) 324, 384, 515, 882
GluI GCNGC 1 cut(s) 163
GsaI CCCAGC 1 cut(s) 819
HaeII RGCGCY 3 cut(s) 326, 517, 884
HaeIII GGCC 2 cut(s) 497, 546
HapII CCGG 1 cut(s) 326
HgaI GACGC 1 cut(s) 798
HhaI GCGC 4 cut(s) 325, 385, 516, 883
Hin1I GRCGYC 2 cut(s) 323, 514
Hin6I GCGC 4 cut(s) 323, 383, 514, 881
HinP1I GCGC 4 cut(s) 323, 383, 514, 881
HinfI GANTC 3 cut(s) 44, 236, 394
HpaII CCGG 1 cut(s) 326
HphI GGTGA 1 cut(s) 689
Hpy188I TCNGA 3 cut(s) 196, 300, 893
Hpy188III TCNNGA 7 cut(s) 95, 284, 539, 590, 638, 662, 965
HpyAV CCTTC 6 cut(s) 156, 241, 325, 411, 463, 895
HpyCH4III ACNGT 3 cut(s) 35, 450, 844
HpyCH4V TGCA 2 cut(s) 4, 864
HpyF3I CTNAG 2 cut(s) 152, 518
Hsp92I GRCGYC 2 cut(s) 323, 514
HspAI GCGC 4 cut(s) 323, 383, 514, 881
KasI GGCGCC 2 cut(s) 322, 513
Ksp22I TGATCA 1 cut(s) 586
Kzo9I GATC 7 cut(s) 6, 24, 189, 503, 586, 888, 917
LguI GCTCTTC 1 cut(s) 172
Lsp1109I GCAGC 1 cut(s) 149
LweI GCATC 4 cut(s) 114, 655, 676, 873
MaeI CTAG 3 cut(s) 48, 95, 878
MaeIII GTNAC 3 cut(s) 629, 677, 965
MalI GATC 7 cut(s) 8, 26, 191, 505, 588, 890, 919
MboI GATC 7 cut(s) 6, 24, 189, 503, 586, 888, 917
MboII GAAGA 6 cut(s) 75, 159, 349, 352, 365, 436
MflI RGATCY 2 cut(s) 6, 503
MhlI GDGCHC 2 cut(s) 499, 648
MluCI AATT 3 cut(s) 98, 783, 796
Mly113I GGCGCC 2 cut(s) 323, 514
MlyI GAGTC 1 cut(s) 230
MmeI TCCRAC 1 cut(s) 219
MroXI GAANNNNTTC 1 cut(s) 357
MseI TTAA 3 cut(s) 245, 786, 834
MslI CAYNNNNRTG 3 cut(s) 266, 768, 842
MspA1I CMGCKG 1 cut(s) 815
MspI CCGG 1 cut(s) 326
MspR9I CCNGG 1 cut(s) 548
MvaI CCWGG 1 cut(s) 548
MvnI CGCG 1 cut(s) 385
NarI GGCGCC 2 cut(s) 323, 514
NdeII GATC 7 cut(s) 6, 24, 189, 503, 586, 888, 917
NheI GCTAGC 1 cut(s) 877
NlaIV GGNNCC 5 cut(s) 324, 479, 497, 515, 558
NmuCI GTSAC 3 cut(s) 629, 677, 965
NspI RCATGY 1 cut(s) 412
OliI CACNNNNGTG 1 cut(s) 842
PagI TCATGA 3 cut(s) 283, 589, 637
PciSI GCTCTTC 1 cut(s) 172
PcsI WCGNNNNNNNCGW 1 cut(s) 215
PdmI GAANNNNTTC 1 cut(s) 357
PfeI GAWTC 2 cut(s) 44, 394
Pfl23II CGTACG 1 cut(s) 386
PflMI CCANNNNNTGG 1 cut(s) 553
PkrI GCNGC 1 cut(s) 164
PleI GAGTC 1 cut(s) 230
PluTI GGCGCC 2 cut(s) 326, 517
PpsI GAGTC 1 cut(s) 230
PshBI ATTAAT 1 cut(s) 245
Psp6I CCWGG 1 cut(s) 546
PspFI CCCAGC 1 cut(s) 815
PspGI CCWGG 1 cut(s) 546
PspLI CGTACG 1 cut(s) 386
PspN4I GGNNCC 5 cut(s) 324, 479, 497, 515, 558
PspOMI GGGCCC 1 cut(s) 495
PspPI GGNCC 3 cut(s) 271, 495, 496
PsuI RGATCY 2 cut(s) 6, 503
PvuII CAGCTG 1 cut(s) 815
RsaI GTAC 3 cut(s) 388, 488, 623
RsaNI GTAC 3 cut(s) 387, 487, 622
RseI CAYNNNNRTG 3 cut(s) 266, 768, 842
SapI GCTCTTC 1 cut(s) 172
SaqAI TTAA 3 cut(s) 245, 786, 834
SatI GCNGC 1 cut(s) 163
Sau3AI GATC 7 cut(s) 6, 24, 189, 503, 586, 888, 917
Sau96I GGNCC 3 cut(s) 271, 495, 496
ScaI AGTACT 1 cut(s) 488
SchI GAGTC 1 cut(s) 230
ScrFI CCNGG 1 cut(s) 548
SduI GDGCHC 2 cut(s) 499, 648
SfaNI GCATC 4 cut(s) 114, 655, 676, 873
SfcI CTRYAG 1 cut(s) 524
SfoI GGCGCC 2 cut(s) 324, 515
SinI GGWCC 1 cut(s) 271
SmiMI CAYNNNNRTG 3 cut(s) 266, 768, 842
Sse9I AATT 3 cut(s) 98, 783, 796
SsiI CCGC 5 cut(s) 22, 171, 225, 560, 954
SspDI GGCGCC 2 cut(s) 322, 513
SspI AATATT 2 cut(s) 80, 832
SspMI CTAG 3 cut(s) 48, 95, 878
StyD4I CCNGG 1 cut(s) 546
StyI CCWWGG 2 cut(s) 17, 413
TaaI ACNGT 3 cut(s) 35, 450, 844
TaqI TCGA 3 cut(s) 209, 234, 663
TasI AATT 3 cut(s) 98, 783, 796
TatI WGTACW 1 cut(s) 486
TfiI GAWTC 2 cut(s) 44, 394
Tru1I TTAA 3 cut(s) 245, 786, 834
Tru9I TTAA 3 cut(s) 245, 786, 834
TseFI GTSAC 3 cut(s) 629, 677, 965
TseI GCWGC 1 cut(s) 162
Tsp45I GTSAC 3 cut(s) 629, 677, 965
TspDTI ATGAA 5 cut(s) 42, 153, 269, 366, 789
TspGWI ACGGA 2 cut(s) 404, 476
Van91I CCANNNNNTGG 1 cut(s) 553
VpaK11BI GGWCC 1 cut(s) 271
VspI ATTAAT 1 cut(s) 245
XapI RAATTY 1 cut(s) 98
XbaI TCTAGA 1 cut(s) 94
XceI RCATGY 1 cut(s) 412
XcmI CCANNNNNNNNNTGG 1 cut(s) 506
XmnI GAANNNNTTC 1 cut(s) 357
XspI CTAG 3 cut(s) 48, 95, 878
ZrmI AGTACT 1 cut(s) 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.