pycom08g19080

Fantastic Four meristem regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0002468
Physical Location & Seq
Forward (+)
19129452 .. 19131421
1970 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g19080.1

Sequence Viewer

Length: 1236 bp
ATGCAGATCCCCAATCCAAGTCGGATCACTAACAGTCTCATAGATTCTAGTCCATGCCAATCCCAATCCAAATCGCAAATCCAATATTCCTATCCTCTAGAATTTAGCCTCAAGCCCCTCACAACTACTTTTGAACCCCAAGAAAACCCTTCTCTTAGTAGAAGCTGCTCCTCCACCTCCATTGATACAATGATCTCCGACTTGTTTTCCCCGACCTCCTCGTCCTCCGCCTCCTCCGACTCACTATTAATGTCTGGGGACTACCTTGGCATGGAGTCCTGTGTCGACGTTGTAAGTGACGATGAATTGAGCTTTAGTGGCTGTCGTCATGATTGTTATAGTCAGAGAAAAGAAAGGTTATGTTGGGCGCGGGAGAAGGAGAAGAAGAGAACTTATGAAGAACTTCCACCTCCACTTTCGTTGCTGGCGCGTACGGAGAATCTGCCTTCTCACATGCCTTGGGTTTTGAAGAGGCATTACACCACCGATGGACGGTTGATTTTGACGGAGGAGAAGGTTCGGCACCATGAGTACTTCAGGGCCCATAGATCCAATGGGCGCCTTAGACTACAGCTTGTCCCTCTTGACGGCCAGGTTTTGGTTCCGCCAGTAGTTTGTTGTGATGATGATCATGATGAGGAGGAGGTGGATGATAATGATGGGTACTATTGTGATAATCATGATGTGCTCTACGATGACAATCTCGATGCTTATGATGGCGACGATGATGCTTATGATTACGATTACGATTGTCATTGTGATTATGATTATGATTATGACAATGACTGCAATGGTCTTTGTCGTCATGGTGATGTTGAACAAACAATTAAGGTTGCCAATTCATCAACTGCGTCAGCTGAGAAGTGTCGTAATATTAACACTACTGTGAAAACAGAGTCATCGTGCATCTTGGGAGTGCTAGCGCCAGCGATCAGATGTGTGAAGGGCAATACAAATGGATCAAGGAAAGGCTTTCTGGGGCAAGCTGGATTTGGCGGCCTATTTCGCGGCCATGCTGGTCAAGTAACGATCAGCGCTTTTTGTGACAATATCGGAATCTCCTTTACTCATAGGGCTAAACTTGCAGCCTTCATCTTTGCTATGATCATAGCTTGGGAGAAGGGTTGGTTACGCTATGGTTGGATACAAATTCTCAGTTGGTCCTATCTCTTTTCTCTAAACCCCTTTCTGCTCTTTGGTCTTTGTGTCCTCAGTGGGGACATTGATGTTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

412

Amino Acids

46.25

Weight (kDa)

4.83

Isoelectric Point (pI)

52.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 134 - 192 1.3e-19 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 220
AccB1I GGYRCC 2 cut(s) 522, 558
AccB7I CCANNNNNTGG 1 cut(s) 598
AccI GTMKAC 1 cut(s) 285
AccII CGCG 3 cut(s) 370, 430, 1008
AciI CCGC 5 cut(s) 228, 370, 605, 996, 1008
AclWI GGATC 3 cut(s) 32, 543, 967
AcoI YGGCCR 2 cut(s) 589, 1009
AcsI RAATTY 2 cut(s) 101, 1149
AcuI CTGAAG 1 cut(s) 520
AcyI GRCGYC 1 cut(s) 559
AfaI GTAC 3 cut(s) 433, 533, 665
AfeI AGCGCT 1 cut(s) 1036
AfiI CCNNNNNNNGG 5 cut(s) 271, 492, 587, 598, 1216
AgsI TTSAA 3 cut(s) 134, 469, 818
AjnI CCWGG 1 cut(s) 591
AleI CACNNNNGTG 1 cut(s) 884
AluBI AGCT 6 cut(s) 165, 312, 574, 857, 986, 1112
AluI AGCT 6 cut(s) 165, 312, 574, 857, 986, 1112
Alw21I GWGCWC 1 cut(s) 690
Alw26I GTCTC 1 cut(s) 41
AlwI GGATC 3 cut(s) 32, 543, 967
Aor51HI AGCGCT 1 cut(s) 1036
AoxI GGCC 4 cut(s) 540, 589, 997, 1009
ApaI GGGCCC 1 cut(s) 544
ApeKI GCWGC 2 cut(s) 165, 1085
ApoI RAATTY 2 cut(s) 101, 1149
AseI ATTAAT 1 cut(s) 248
Asp700I GAANNNNTTC 1 cut(s) 402
AspLEI GCGC 5 cut(s) 370, 430, 561, 925, 1037
AspS9I GGNCC 3 cut(s) 540, 541, 1161
AsuHPI GGTGA 1 cut(s) 821
AsuNHI GCTAGC 1 cut(s) 919
AvaII GGWCC 1 cut(s) 1161
BaeGI GKGCMC 1 cut(s) 544
BaeI ACNNNNGTAYC 2 cut(s) 655, 688
BanI GGYRCC 2 cut(s) 522, 558
BanII GRGCYC 1 cut(s) 544
BarI GAAGNNNNNNTAC 2 cut(s) 461, 493
Bbv12I GWGCWC 1 cut(s) 690
BbvI GCAGC 2 cut(s) 152, 1097
BccI CCATC 3 cut(s) 482, 653, 710
BceAI ACGGC 1 cut(s) 604
BcgI CGANNNNNNTGC 2 cut(s) 710, 744
BciT130I CCWGG 1 cut(s) 593
BciVI GTATCC 1 cut(s) 1137
BclI TGATCA 2 cut(s) 628, 1104
BcoDI GTCTC 1 cut(s) 41
BfaI CTAG 3 cut(s) 48, 98, 920
BfmI CTRYAG 1 cut(s) 569
BfoI RGCGCY 3 cut(s) 562, 926, 1038
BfuI GTATCC 1 cut(s) 1137
BisI GCNGC 4 cut(s) 166, 997, 1009, 1086
BlsI GCNGC 4 cut(s) 167, 998, 1010, 1087
BmcAI AGTACT 1 cut(s) 533
Bme1390I CCNGG 1 cut(s) 593
Bme18I GGWCC 1 cut(s) 1161
BmgT120I GGNCC 3 cut(s) 540, 541, 1161
BmiI GGNNCC 4 cut(s) 524, 542, 560, 603
BmrFI CCNGG 1 cut(s) 593
BmsI GCATC 3 cut(s) 697, 718, 915
BmtI GCTAGC 1 cut(s) 923
BpuEI CTTGAG 1 cut(s) 95
BsaBI GATNNNNATC 2 cut(s) 627, 699
BsaHI GRCGYC 1 cut(s) 559
BsaJI CCNNGG 2 cut(s) 265, 458
Bsc4I CCNNNNNNNGG 5 cut(s) 271, 492, 587, 598, 1216
Bse1I ACTGG 1 cut(s) 608
Bse3DI GCAATG 1 cut(s) 796
Bse8I GATNNNNATC 2 cut(s) 627, 699
BseBI CCWGG 1 cut(s) 593
BseDI CCNNGG 2 cut(s) 265, 458
BseGI GGATG 1 cut(s) 655
BseJI GATNNNNATC 2 cut(s) 627, 699
BseLI CCNNNNNNNGG 5 cut(s) 271, 492, 587, 598, 1216
BseMI GCAATG 1 cut(s) 796
BseMII CTCAG 3 cut(s) 849, 1168, 1225
BseNI ACTGG 1 cut(s) 608
BseRI GAGGAG 6 cut(s) 160, 208, 223, 524, 653, 656
BseSI GKGCMC 1 cut(s) 544
BseXI GCAGC 2 cut(s) 152, 1097
Bsh1236I CGCG 3 cut(s) 370, 430, 1008
BshFI GGCC 4 cut(s) 542, 591, 999, 1011
BshNI GGYRCC 2 cut(s) 522, 558
BsiHKAI GWGCWC 1 cut(s) 690
BsiWI CGTACG 1 cut(s) 431
BslFI GGGAC 3 cut(s) 272, 563, 1232
BslI CCNNNNNNNGG 5 cut(s) 271, 492, 587, 598, 1216
BsmAI GTCTC 1 cut(s) 41
BsmFI GGGAC 3 cut(s) 272, 563, 1232
BsnI GGCC 4 cut(s) 542, 591, 999, 1011
Bsp120I GGGCCC 1 cut(s) 540
Bsp1286I GDGCHC 2 cut(s) 544, 690
Bsp143I GATC 9 cut(s) 6, 24, 192, 548, 628, 930, 959, 1029, 1104
BspACI CCGC 5 cut(s) 228, 370, 605, 996, 1008
BspANI GGCC 4 cut(s) 542, 591, 999, 1011
BspCNI CTCAG 3 cut(s) 850, 1167, 1224
BspFNI CGCG 3 cut(s) 370, 430, 1008
BspHI TCATGA 3 cut(s) 328, 631, 679
BspLI GGNNCC 4 cut(s) 524, 542, 560, 603
BspOI GCTAGC 1 cut(s) 923
BspPI GGATC 3 cut(s) 32, 543, 967
BspT107I GGYRCC 2 cut(s) 522, 558
BsrDI GCAATG 1 cut(s) 796
BsrI ACTGG 1 cut(s) 608
BssECI CCNNGG 2 cut(s) 265, 458
BssMI GATC 9 cut(s) 6, 24, 192, 548, 628, 930, 959, 1029, 1104
BssNI GRCGYC 1 cut(s) 559
BssT1I CCWWGG 2 cut(s) 265, 458
Bst2UI CCWGG 1 cut(s) 593
Bst4CI ACNGT 3 cut(s) 35, 495, 886
Bst6I CTCTTC 2 cut(s) 380, 464
BstACI GRCGYC 1 cut(s) 559
BstC8I GCNNGC 4 cut(s) 426, 921, 927, 984
BstDEI CTNAG 5 cut(s) 155, 563, 858, 1154, 1211
BstF5I GGATG 1 cut(s) 655
BstFNI CGCG 3 cut(s) 370, 430, 1008
BstH2I RGCGCY 3 cut(s) 562, 926, 1038
BstHHI GCGC 5 cut(s) 370, 430, 561, 925, 1037
BstKTI GATC 9 cut(s) 9, 27, 195, 551, 631, 933, 962, 1032, 1107
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 9 cut(s) 6, 24, 192, 548, 628, 930, 959, 1029, 1104
BstMWI GCNNNNNNNGC 3 cut(s) 318, 1005, 1082
BstNI CCWGG 1 cut(s) 593
BstNSI RCATGY 1 cut(s) 457
BstSCI CCNGG 1 cut(s) 591
BstSFI CTRYAG 1 cut(s) 569
BstSLI GKGCMC 1 cut(s) 544
BstUI CGCG 3 cut(s) 370, 430, 1008
BstV1I GCAGC 2 cut(s) 152, 1097
BstX2I RGATCY 2 cut(s) 6, 548
BstYI RGATCY 2 cut(s) 6, 548
BsuI GTATCC 1 cut(s) 1137
BsuRI GGCC 4 cut(s) 542, 591, 999, 1011
BtsCI GGATG 1 cut(s) 655
BtsIMutI CAGTG 1 cut(s) 1219
Cac8I GCNNGC 4 cut(s) 426, 921, 927, 984
CciI TCATGA 3 cut(s) 328, 631, 679
CfoI GCGC 5 cut(s) 370, 430, 561, 925, 1037
Cfr13I GGNCC 3 cut(s) 540, 541, 1161
CseI GACGC 1 cut(s) 840
Csp6I GTAC 3 cut(s) 432, 532, 664
CspCI CAANNNNNGTGG 4 cut(s) 163, 198, 402, 437
CviAII CATG 9 cut(s) 54, 271, 329, 454, 527, 632, 680, 806, 1013
CviQI GTAC 3 cut(s) 432, 532, 664
DdeI CTNAG 5 cut(s) 155, 563, 858, 1154, 1211
DinI GGCGCC 1 cut(s) 560
DpnI GATC 9 cut(s) 8, 26, 194, 550, 630, 932, 961, 1031, 1106
DpnII GATC 9 cut(s) 6, 24, 192, 548, 628, 930, 959, 1029, 1104
DrdI GACNNNNNNGTC 1 cut(s) 220
DseDI GACNNNNNNGTC 1 cut(s) 220
EaeI YGGCCR 2 cut(s) 589, 1009
Eam1104I CTCTTC 2 cut(s) 380, 464
EarI CTCTTC 2 cut(s) 380, 464
EciI GGCGGA 2 cut(s) 217, 594
Eco130I CCWWGG 2 cut(s) 265, 458
Eco24I GRGCYC 1 cut(s) 544
Eco47I GGWCC 1 cut(s) 1161
Eco47III AGCGCT 1 cut(s) 1036
Eco57I CTGAAG 1 cut(s) 520
EcoO109I RGGNCCY 1 cut(s) 540
EcoRII CCWGG 1 cut(s) 591
EcoT14I CCWWGG 2 cut(s) 265, 458
EcoT38I GRGCYC 1 cut(s) 544
EgeI GGCGCC 1 cut(s) 560
EheI GGCGCC 1 cut(s) 560
ErhI CCWWGG 2 cut(s) 265, 458
FaeI CATG 9 cut(s) 57, 274, 332, 457, 530, 635, 683, 809, 1016
FaqI GGGAC 3 cut(s) 272, 563, 1232
FatI CATG 9 cut(s) 53, 270, 328, 453, 526, 631, 679, 805, 1012
FauI CCCGC 1 cut(s) 363
FbaI TGATCA 2 cut(s) 628, 1104
FblI GTMKAC 1 cut(s) 285
Fnu4HI GCNGC 4 cut(s) 166, 997, 1009, 1086
FokI GGATG 1 cut(s) 662
FriOI GRGCYC 1 cut(s) 544
Fsp4HI GCNGC 4 cut(s) 166, 997, 1009, 1086
FspBI CTAG 3 cut(s) 48, 98, 920
GlaI GCGC 5 cut(s) 369, 429, 560, 924, 1036
GluI GCNGC 4 cut(s) 166, 997, 1009, 1086
HaeII RGCGCY 3 cut(s) 562, 926, 1038
HaeIII GGCC 4 cut(s) 542, 591, 999, 1011
HgaI GACGC 1 cut(s) 840
HhaI GCGC 5 cut(s) 370, 430, 561, 925, 1037
Hin1I GRCGYC 1 cut(s) 559
Hin1II CATG 9 cut(s) 57, 274, 332, 457, 530, 635, 683, 809, 1016
Hin6I GCGC 5 cut(s) 368, 428, 559, 923, 1035
HinP1I GCGC 5 cut(s) 368, 428, 559, 923, 1035
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HinfI GANTC 6 cut(s) 44, 239, 275, 439, 896, 1056
HphI GGTGA 1 cut(s) 821
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 6 cut(s) 24, 199, 238, 345, 935, 1055
Hpy188III TCNNGA 6 cut(s) 98, 329, 584, 632, 680, 704
Hpy8I GTNNAC 1 cut(s) 286
Hpy99I CGWCG 2 cut(s) 290, 725
HpyAV CCTTC 7 cut(s) 159, 370, 456, 508, 937, 1099, 1114
HpyCH4III ACNGT 3 cut(s) 35, 495, 886
HpyCH4IV ACGT 1 cut(s) 288
HpyCH4V TGCA 4 cut(s) 4, 789, 906, 1085
HpyF10VI GCNNNNNNNGC 3 cut(s) 318, 1005, 1082
HpyF3I CTNAG 5 cut(s) 155, 563, 858, 1154, 1211
HpySE526I ACGT 1 cut(s) 288
Hsp92I GRCGYC 1 cut(s) 559
Hsp92II CATG 9 cut(s) 57, 274, 332, 457, 530, 635, 683, 809, 1016
HspAI GCGC 5 cut(s) 368, 428, 559, 923, 1035
KasI GGCGCC 1 cut(s) 558
Ksp22I TGATCA 2 cut(s) 628, 1104
Kzo9I GATC 9 cut(s) 6, 24, 192, 548, 628, 930, 959, 1029, 1104
LmnI GCTCC 1 cut(s) 173
Lsp1109I GCAGC 2 cut(s) 152, 1097
LweI GCATC 3 cut(s) 697, 718, 915
MaeI CTAG 3 cut(s) 48, 98, 920
MaeII ACGT 1 cut(s) 288
MaeIII GTNAC 4 cut(s) 296, 1024, 1043, 1128
MalI GATC 9 cut(s) 8, 26, 194, 550, 630, 932, 961, 1031, 1106
MboI GATC 9 cut(s) 6, 24, 192, 548, 628, 930, 959, 1029, 1104
MboII GAAGA 4 cut(s) 394, 397, 410, 481
MflI RGATCY 2 cut(s) 6, 548
MhlI GDGCHC 2 cut(s) 544, 690
MluCI AATT 5 cut(s) 101, 305, 825, 838, 1149
Mly113I GGCGCC 1 cut(s) 559
MlyI GAGTC 3 cut(s) 233, 284, 905
MmeI TCCRAC 3 cut(s) 222, 261, 1121
MroXI GAANNNNTTC 1 cut(s) 402
MseI TTAA 3 cut(s) 248, 828, 876
MslI CAYNNNNRTG 2 cut(s) 810, 884
MspA1I CMGCKG 1 cut(s) 857
MspR9I CCNGG 1 cut(s) 593
MvaI CCWGG 1 cut(s) 593
MvnI CGCG 3 cut(s) 370, 430, 1008
MwoI GCNNNNNNNGC 3 cut(s) 318, 1005, 1082
NarI GGCGCC 1 cut(s) 559
NdeII GATC 9 cut(s) 6, 24, 192, 548, 628, 930, 959, 1029, 1104
NheI GCTAGC 1 cut(s) 919
NlaIII CATG 9 cut(s) 57, 274, 332, 457, 530, 635, 683, 809, 1016
NlaIV GGNNCC 4 cut(s) 524, 542, 560, 603
NmuCI GTSAC 2 cut(s) 296, 1043
NspI RCATGY 1 cut(s) 457
OliI CACNNNNGTG 1 cut(s) 884
PagI TCATGA 3 cut(s) 328, 631, 679
PdmI GAANNNNTTC 1 cut(s) 402
PfeI GAWTC 3 cut(s) 44, 439, 1056
Pfl23II CGTACG 1 cut(s) 431
PflMI CCANNNNNTGG 1 cut(s) 598
PkrI GCNGC 4 cut(s) 167, 998, 1010, 1087
PleI GAGTC 3 cut(s) 233, 283, 904
PluTI GGCGCC 1 cut(s) 562
PpsI GAGTC 3 cut(s) 233, 283, 904
PshBI ATTAAT 1 cut(s) 248
Psp6I CCWGG 1 cut(s) 591
PspGI CCWGG 1 cut(s) 591
PspLI CGTACG 1 cut(s) 431
PspN4I GGNNCC 4 cut(s) 524, 542, 560, 603
PspOMI GGGCCC 1 cut(s) 540
PspPI GGNCC 3 cut(s) 540, 541, 1161
PsuI RGATCY 2 cut(s) 6, 548
PvuII CAGCTG 1 cut(s) 857
RsaI GTAC 3 cut(s) 433, 533, 665
RsaNI GTAC 3 cut(s) 432, 532, 664
RseI CAYNNNNRTG 2 cut(s) 810, 884
SalI GTCGAC 1 cut(s) 284
SaqAI TTAA 3 cut(s) 248, 828, 876
SatI GCNGC 4 cut(s) 166, 997, 1009, 1086
Sau3AI GATC 9 cut(s) 6, 24, 192, 548, 628, 930, 959, 1029, 1104
Sau96I GGNCC 3 cut(s) 540, 541, 1161
ScaI AGTACT 1 cut(s) 533
SchI GAGTC 3 cut(s) 233, 284, 905
ScrFI CCNGG 1 cut(s) 593
SduI GDGCHC 2 cut(s) 544, 690
SfaNI GCATC 3 cut(s) 697, 718, 915
SfcI CTRYAG 1 cut(s) 569
SfoI GGCGCC 1 cut(s) 560
SinI GGWCC 1 cut(s) 1161
SmiMI CAYNNNNRTG 2 cut(s) 810, 884
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 5 cut(s) 101, 305, 825, 838, 1149
SsiI CCGC 5 cut(s) 228, 370, 605, 996, 1008
SspDI GGCGCC 1 cut(s) 558
SspI AATATT 2 cut(s) 86, 874
SspMI CTAG 3 cut(s) 48, 98, 920
StyD4I CCNGG 1 cut(s) 591
StyI CCWWGG 2 cut(s) 265, 458
TaaI ACNGT 3 cut(s) 35, 495, 886
TaiI ACGT 1 cut(s) 291
TaqI TCGA 2 cut(s) 285, 705
TasI AATT 5 cut(s) 101, 305, 825, 838, 1149
TatI WGTACW 1 cut(s) 531
TauI GCSGC 2 cut(s) 999, 1011
TfiI GAWTC 3 cut(s) 44, 439, 1056
Tru1I TTAA 3 cut(s) 248, 828, 876
Tru9I TTAA 3 cut(s) 248, 828, 876
TscAI CASTG 1 cut(s) 1219
TseFI GTSAC 2 cut(s) 296, 1043
TseI GCWGC 2 cut(s) 165, 1085
Tsp45I GTSAC 2 cut(s) 296, 1043
TspDTI ATGAA 4 cut(s) 318, 411, 831, 1081
TspGWI ACGGA 2 cut(s) 449, 521
TspRI CASTG 1 cut(s) 1219
Van91I CCANNNNNTGG 1 cut(s) 598
VpaK11BI GGWCC 1 cut(s) 1161
VspI ATTAAT 1 cut(s) 248
XapI RAATTY 2 cut(s) 101, 1149
XbaI TCTAGA 1 cut(s) 97
XceI RCATGY 1 cut(s) 457
XcmI CCANNNNNNNNNTGG 1 cut(s) 551
XmiI GTMKAC 1 cut(s) 285
XmnI GAANNNNTTC 1 cut(s) 402
XspI CTAG 3 cut(s) 48, 98, 920
ZrmI AGTACT 1 cut(s) 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.