pycom15g32490

Fantastic Four meristem regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0002468
Physical Location & Seq
Reverse (-)
31529344 .. 31530520
1177 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g32490.1

Sequence Viewer

Length: 924 bp
ATGAAAGCAGACCAAGTAAGATCAAGAGCTACGTTGCCATTCCCCATGCACATCCAAAAGGAATTCCCGACCCACCTACATCTCCATCTAGGCCTTAAAACCCTAATTTTTCCAGAAGCAACTACAAACGCTGATTCCCACGTCATTCACAACCACAAGCTTTCACTACACTCACCATCTACATCAAGGACGTCGTCGCTTTCTTCTTCTGTGTTGATGGATAGTTCCTCGTCTTGGTCGTCATCTGCAGTGGACGACCTGATTGGGACGGAGAGCGGCGCCCCAATCATGTCGAATGAGGAACAAGAGAAATTAGGGCTTTTGAATAATCAAGATAAGGGGAAAACTACTACCAAAAAGAGTGAAAGGATAATGATCAAAAGGGAATATCCACCACCGATACCGTTACTTGCACAGACTGGGAATTTGCACGGTCGCATGCCTTGGGTTCTGACCAAGCATTATAACTACTCTGATGGAAGGCTTGTTCTTAAGGGAGAGAGAGTGAAGCATCACGAGTACTTTGAAGCTCTCCGCGAAAATGGCCGTCTGATCTTAAACCTTGTAGCTTTAGACAACAATGCCATAATATGTTGTGAACATCAGGAAACTATTGATGAAGAAGAAGACATGGAAAAGGAAGACCTATTTGTTGATGGAGAAGATCATGGAGAGCAAACCGAAATCAAAAAGTGCTTTAATAAAGAAAGTGATTCTGAGGATGAATGTGATCACAGCTACGTGGACGAGACTCATTATCATGATCATGTACAAAAGAAAGCAATGGATATTGTAATGGGTTATAATTCGATGCGTCGATCAACTTCCTTTTGCGATGCTCAAATTAATATCCATGAACACCAGCAGATTTACTTAGATCACCCTGCTTCTGCTCCTCTTCGTCCAATGACTACTGTCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

308

Amino Acids

34.99

Weight (kDa)

5.68

Isoelectric Point (pI)

54.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 129 - 188 1.3e-15 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 465, 804
AatII GACGTC 1 cut(s) 194
AccB1I GGYRCC 1 cut(s) 278
AccBSI CCGCTC 1 cut(s) 276
AccII CGCG 1 cut(s) 537
AciI CCGC 2 cut(s) 276, 535
AcoI YGGCCR 1 cut(s) 544
AcsI RAATTY 2 cut(s) 62, 424
AcyI GRCGYC 2 cut(s) 191, 279
AfaI GTAC 2 cut(s) 521, 771
AfiI CCNNNNNNNGG 1 cut(s) 234
AflII CTTAAG 1 cut(s) 491
AgsI TTSAA 2 cut(s) 325, 527
AjiI CACGTC 1 cut(s) 142
AloI GAACNNNNNNTCC 2 cut(s) 471, 503
AluBI AGCT 5 cut(s) 29, 160, 530, 569, 738
AluI AGCT 5 cut(s) 29, 160, 530, 569, 738
Alw26I GTCTC 1 cut(s) 743
AoxI GGCC 2 cut(s) 91, 544
ApoI RAATTY 2 cut(s) 62, 424
ArsI GACNNNNNNTTYG 2 cut(s) 409, 441
AseI ATTAAT 1 cut(s) 846
AspLEI GCGC 1 cut(s) 281
AsuHPI GGTGA 2 cut(s) 165, 872
BanI GGYRCC 1 cut(s) 278
BauI CACGAG 1 cut(s) 515
BbsI GAAGAC 2 cut(s) 633, 648
BccI CCATC 5 cut(s) 93, 184, 211, 470, 650
BceAI ACGGC 1 cut(s) 531
BclI TGATCA 3 cut(s) 375, 730, 763
BcoDI GTCTC 1 cut(s) 743
BfaI CTAG 1 cut(s) 89
BfmI CTRYAG 1 cut(s) 246
BfoI RGCGCY 1 cut(s) 282
BfrI CTTAAG 1 cut(s) 491
BisI GCNGC 1 cut(s) 277
BlsI GCNGC 1 cut(s) 278
BmcAI AGTACT 1 cut(s) 521
BmgBI CACGTC 1 cut(s) 142
BmiI GGNNCC 1 cut(s) 280
BmrI ACTGGG 1 cut(s) 429
BmsI GCATC 3 cut(s) 520, 801, 826
BmuI ACTGGG 1 cut(s) 429
BoxI GACNNNNGTC 1 cut(s) 914
BpiI GAAGAC 2 cut(s) 633, 648
BsaAI YACGTR 1 cut(s) 742
BsaBI GATNNNNATC 1 cut(s) 374
BsaHI GRCGYC 2 cut(s) 191, 279
BsaJI CCNNGG 1 cut(s) 443
BsaXI ACNNNNNCTCC 2 cut(s) 489, 519
Bsc4I CCNNNNNNNGG 1 cut(s) 234
Bse1I ACTGG 1 cut(s) 424
Bse3DI GCAATG 1 cut(s) 789
Bse8I GATNNNNATC 1 cut(s) 374
BseDI CCNNGG 1 cut(s) 443
BseGI GGATG 2 cut(s) 51, 727
BseJI GATNNNNATC 1 cut(s) 374
BseLI CCNNNNNNNGG 1 cut(s) 234
BseMI GCAATG 1 cut(s) 789
BseMII CTCAG 1 cut(s) 708
BseNI ACTGG 1 cut(s) 424
BseRI GAGGAG 1 cut(s) 885
Bsh1236I CGCG 1 cut(s) 537
Bsh1285I CGRYCG 1 cut(s) 436
BshFI GGCC 2 cut(s) 93, 546
BshNI GGYRCC 1 cut(s) 278
BsiEI CGRYCG 1 cut(s) 436
BslFI GGGAC 1 cut(s) 280
BslI CCNNNNNNNGG 1 cut(s) 234
BsmAI GTCTC 1 cut(s) 743
BsmFI GGGAC 1 cut(s) 280
BsnI GGCC 2 cut(s) 93, 546
Bsp1407I TGTACA 1 cut(s) 769
Bsp143I GATC 8 cut(s) 20, 375, 552, 664, 730, 763, 818, 877
BspACI CCGC 2 cut(s) 276, 535
BspANI GGCC 2 cut(s) 93, 546
BspCNI CTCAG 1 cut(s) 709
BspFNI CGCG 1 cut(s) 537
BspHI TCATGA 1 cut(s) 760
BspLI GGNNCC 1 cut(s) 280
BspMAI CTGCAG 1 cut(s) 250
BspT107I GGYRCC 1 cut(s) 278
BspTI CTTAAG 1 cut(s) 491
BsrBI CCGCTC 1 cut(s) 276
BsrDI GCAATG 1 cut(s) 789
BsrGI TGTACA 1 cut(s) 769
BsrI ACTGG 1 cut(s) 424
BssECI CCNNGG 1 cut(s) 443
BssMI GATC 8 cut(s) 20, 375, 552, 664, 730, 763, 818, 877
BssNI GRCGYC 2 cut(s) 191, 279
BssSI CACGAG 1 cut(s) 515
BssT1I CCWWGG 1 cut(s) 443
Bst2BI CACGAG 1 cut(s) 515
Bst4CI ACNGT 3 cut(s) 405, 434, 916
Bst6I CTCTTC 1 cut(s) 903
BstACI GRCGYC 2 cut(s) 191, 279
BstAFI CTTAAG 1 cut(s) 491
BstAUI TGTACA 1 cut(s) 769
BstBAI YACGTR 1 cut(s) 742
BstC8I GCNNGC 1 cut(s) 440
BstDEI CTNAG 2 cut(s) 717, 874
BstF5I GGATG 2 cut(s) 51, 727
BstFNI CGCG 1 cut(s) 537
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 1 cut(s) 281
BstKTI GATC 8 cut(s) 23, 378, 555, 667, 733, 766, 821, 880
BstMAI GTCTC 1 cut(s) 743
BstMBI GATC 8 cut(s) 20, 375, 552, 664, 730, 763, 818, 877
BstMCI CGRYCG 1 cut(s) 436
BstMWI GCNNNNNNNGC 1 cut(s) 543
BstNSI RCATGY 1 cut(s) 442
BstPAI GACNNNNGTC 1 cut(s) 914
BstSFI CTRYAG 1 cut(s) 246
BstUI CGCG 1 cut(s) 537
BstV2I GAAGAC 2 cut(s) 633, 648
BsuRI GGCC 2 cut(s) 93, 546
BtgZI GCGATG 1 cut(s) 849
BtrI CACGTC 1 cut(s) 142
BtsCI GGATG 2 cut(s) 51, 727
BtsI GCAGTG 1 cut(s) 255
BtsIMutI CAGTG 1 cut(s) 255
Cac8I GCNNGC 1 cut(s) 440
CciI TCATGA 1 cut(s) 760
CfoI GCGC 1 cut(s) 281
CseI GACGC 1 cut(s) 803
Csp6I GTAC 2 cut(s) 520, 770
CviAII CATG 9 cut(s) 46, 289, 439, 631, 668, 761, 767, 854, 919
CviJI RGCY 9 cut(s) 29, 93, 160, 319, 484, 530, 546, 569, 738
CviKI_1 RGCY 9 cut(s) 29, 93, 160, 319, 484, 530, 546, 569, 738
CviQI GTAC 2 cut(s) 520, 770
DdeI CTNAG 2 cut(s) 717, 874
DinI GGCGCC 1 cut(s) 280
DpnI GATC 8 cut(s) 22, 377, 554, 666, 732, 765, 820, 879
DpnII GATC 8 cut(s) 20, 375, 552, 664, 730, 763, 818, 877
EaeI YGGCCR 1 cut(s) 544
Eam1104I CTCTTC 1 cut(s) 903
EarI CTCTTC 1 cut(s) 903
Eco130I CCWWGG 1 cut(s) 443
Eco147I AGGCCT 1 cut(s) 93
EcoRI GAATTC 1 cut(s) 62
EcoT14I CCWWGG 1 cut(s) 443
EgeI GGCGCC 1 cut(s) 280
EheI GGCGCC 1 cut(s) 280
ErhI CCWWGG 1 cut(s) 443
FaeI CATG 9 cut(s) 49, 292, 442, 634, 671, 764, 770, 857, 922
FaqI GGGAC 1 cut(s) 280
FatI CATG 9 cut(s) 45, 288, 438, 630, 667, 760, 766, 853, 918
FbaI TGATCA 3 cut(s) 375, 730, 763
Fnu4HI GCNGC 1 cut(s) 277
FokI GGATG 2 cut(s) 38, 734
Fsp4HI GCNGC 1 cut(s) 277
FspBI CTAG 1 cut(s) 89
GlaI GCGC 1 cut(s) 280
GluI GCNGC 1 cut(s) 277
HaeII RGCGCY 1 cut(s) 282
HaeIII GGCC 2 cut(s) 93, 546
HgaI GACGC 1 cut(s) 803
HhaI GCGC 1 cut(s) 281
Hin1I GRCGYC 2 cut(s) 191, 279
Hin1II CATG 9 cut(s) 49, 292, 442, 634, 671, 764, 770, 857, 922
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HindIII AAGCTT 1 cut(s) 158
HinfI GANTC 3 cut(s) 134, 713, 751
HphI GGTGA 2 cut(s) 165, 872
Hpy166II GTNNAC 3 cut(s) 253, 599, 745
Hpy188I TCNGA 4 cut(s) 453, 475, 552, 718
Hpy188III TCNNGA 7 cut(s) 24, 67, 113, 332, 515, 605, 761
Hpy8I GTNNAC 3 cut(s) 253, 599, 745
Hpy99I CGWCG 3 cut(s) 196, 199, 819
HpyAV CCTTC 1 cut(s) 474
HpyCH4III ACNGT 3 cut(s) 405, 434, 916
HpyCH4IV ACGT 4 cut(s) 32, 141, 191, 741
HpyCH4V TGCA 4 cut(s) 49, 248, 413, 430
HpyF10VI GCNNNNNNNGC 1 cut(s) 543
HpyF3I CTNAG 2 cut(s) 717, 874
HpySE526I ACGT 4 cut(s) 32, 141, 191, 741
Hsp92I GRCGYC 2 cut(s) 191, 279
Hsp92II CATG 9 cut(s) 49, 292, 442, 634, 671, 764, 770, 857, 922
HspAI GCGC 1 cut(s) 279
KasI GGCGCC 1 cut(s) 278
Ksp22I TGATCA 3 cut(s) 375, 730, 763
Kzo9I GATC 8 cut(s) 20, 375, 552, 664, 730, 763, 818, 877
LmnI GCTCC 1 cut(s) 898
LpnPI CCDG 6 cut(s) 126, 272, 405, 590, 875, 897
LweI GCATC 3 cut(s) 520, 801, 826
MaeI CTAG 1 cut(s) 89
MaeII ACGT 4 cut(s) 32, 141, 191, 741
MaeIII GTNAC 1 cut(s) 405
MalI GATC 8 cut(s) 22, 377, 554, 666, 732, 765, 820, 879
MbiI CCGCTC 1 cut(s) 276
MboI GATC 8 cut(s) 20, 375, 552, 664, 730, 763, 818, 877
MboII GAAGA 8 cut(s) 195, 198, 632, 635, 638, 653, 674, 890
MluCI AATT 6 cut(s) 62, 105, 311, 424, 805, 843
Mly113I GGCGCC 1 cut(s) 279
MlyI GAGTC 1 cut(s) 745
MnlI CCTC 4 cut(s) 238, 292, 712, 906
MseI TTAA 5 cut(s) 96, 492, 557, 699, 846
MslI CAYNNNNRTG 2 cut(s) 759, 765
MspCI CTTAAG 1 cut(s) 491
MvnI CGCG 1 cut(s) 537
MwoI GCNNNNNNNGC 1 cut(s) 543
NarI GGCGCC 1 cut(s) 279
NdeII GATC 8 cut(s) 20, 375, 552, 664, 730, 763, 818, 877
NlaIII CATG 9 cut(s) 49, 292, 442, 634, 671, 764, 770, 857, 922
NlaIV GGNNCC 1 cut(s) 280
NspI RCATGY 1 cut(s) 442
PaeI GCATGC 1 cut(s) 442
PagI TCATGA 1 cut(s) 760
PceI AGGCCT 1 cut(s) 93
PcsI WCGNNNNNNNCGW 1 cut(s) 236
PfeI GAWTC 2 cut(s) 134, 713
PflFI GACNNNGTC 1 cut(s) 193
PkrI GCNGC 1 cut(s) 278
PleI GAGTC 1 cut(s) 745
PluTI GGCGCC 1 cut(s) 282
PpsI GAGTC 1 cut(s) 745
Ppu21I YACGTR 1 cut(s) 742
PshAI GACNNNNGTC 1 cut(s) 914
PshBI ATTAAT 1 cut(s) 846
PsiI TTATAA 2 cut(s) 465, 804
PspN4I GGNNCC 1 cut(s) 280
PstI CTGCAG 1 cut(s) 250
PsyI GACNNNGTC 1 cut(s) 193
RsaI GTAC 2 cut(s) 521, 771
RsaNI GTAC 2 cut(s) 520, 770
RseI CAYNNNNRTG 2 cut(s) 759, 765
SaqAI TTAA 5 cut(s) 96, 492, 557, 699, 846
SatI GCNGC 1 cut(s) 277
Sau3AI GATC 8 cut(s) 20, 375, 552, 664, 730, 763, 818, 877
ScaI AGTACT 1 cut(s) 521
SchI GAGTC 1 cut(s) 745
SfaNI GCATC 3 cut(s) 520, 801, 826
SfcI CTRYAG 1 cut(s) 246
SfoI GGCGCC 1 cut(s) 280
SmiMI CAYNNNNRTG 2 cut(s) 759, 765
SmlI CTYRAG 1 cut(s) 491
SmoI CTYRAG 1 cut(s) 491
SphI GCATGC 1 cut(s) 442
Sse9I AATT 6 cut(s) 62, 105, 311, 424, 805, 843
SseBI AGGCCT 1 cut(s) 93
SsiI CCGC 2 cut(s) 276, 535
SspDI GGCGCC 1 cut(s) 278
SspMI CTAG 1 cut(s) 89
StuI AGGCCT 1 cut(s) 93
StyI CCWWGG 1 cut(s) 443
TaaI ACNGT 3 cut(s) 405, 434, 916
TaiI ACGT 4 cut(s) 35, 144, 194, 744
TaqI TCGA 3 cut(s) 293, 809, 817
TasI AATT 6 cut(s) 62, 105, 311, 424, 805, 843
TatI WGTACW 2 cut(s) 519, 769
TauI GCSGC 1 cut(s) 279
TfiI GAWTC 2 cut(s) 134, 713
Tru1I TTAA 5 cut(s) 96, 492, 557, 699, 846
Tru9I TTAA 5 cut(s) 96, 492, 557, 699, 846
TscAI CASTG 1 cut(s) 255
TspDTI ATGAA 4 cut(s) 17, 633, 738, 870
TspGWI ACGGA 1 cut(s) 284
TspRI CASTG 1 cut(s) 255
Tth111I GACNNNGTC 1 cut(s) 193
Vha464I CTTAAG 1 cut(s) 491
VspI ATTAAT 1 cut(s) 846
XapI RAATTY 2 cut(s) 62, 424
XceI RCATGY 1 cut(s) 442
XspI CTAG 1 cut(s) 89
ZraI GACGTC 1 cut(s) 192
ZrmI AGTACT 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.