FvH4_5g38160

Fantastic Four meristem regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0002468
Physical Location & Seq
Forward (+)
28202089 .. 28207049
4961 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g38160.t1

Sequence Viewer

Length: 996 bp
ATGGATTTCACGAGGGGAAGGTTATTTCTCTGCAATGCTTTCAAATCCATAATTACCTCTCTCGTTTTGTTGTGGCGTTCGAAGTCAACATTTCCCATGCAAACCCCGAAATATAATCCAACAACGCATCAAAATCTCAATAAGCTGGGTCTGAAGACCCTAATCTTCAACCCTAAATCCCATGATCATCGCCACATTGTTCATAAGAACTACAAGCTAGCACCGCCATCGCCATCACCGCAGTCTTCACTCACTTCTTCGAGGTCGTTGTTGGATAAGACATCGTCGTGGACATCGTCTATGATGGACGACTTGCTCGGAACAGACAGCGGCGTCCCCTTCATGGCAACCTCAGACGAGGATATGTTCATGGCAATGACGACCAGTACTACTCGCAGTAACCCCAAGAGGAAACGTACTCAAGGAAACGAAAGGGTGAAAAGGGAATTTCCACCACCAATACCTTTCCTGGCACAAACGGGAAATTTGCAATGTCGTATGCCCTGGAATCTGACCAGGCATTACTCTAATGGAAGGCTAGTTTTGCAAGAAGAGAAAGCACAGCACCATGAGTACTTTGAAGCTGAGCGTGACAACGGCCACCTTGTGTTGAAGCTTGTGCCTCTGGACAACACCATAGTAACCACCTATGATTTGCCGCCTGAGTCGTCTGGTGGACATTTGGCTGTGTGTGAGGAAAACAATGAAGTGCTCGAAATGGAAAACGTGCAGTTTGCTGAAAAAGACTATGCTGAGAATGATAACGATGATGACGATAATGTTGATGATGATGAATGTGAAAACAATGTGGATGAGAGTAAAGCTATGTTGGTCTGCAATTCGGTGCCTCAGTCACACTCGGAGATCAGCAGGTATGCTGAGAAATATGGGAATATGTATTTCACAAAGTCAGCTGCAATCCATGAACAACCGCAAAACTACTTTGCACACCCTGCTTCAGCTCCTCTTCGTCCAATCACTACTGCTGTCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

332

Amino Acids

37.61

Weight (kDa)

5.81

Isoelectric Point (pI)

52.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 149 - 206 2.8e-15 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 332
Acc36I ACCTGC 1 cut(s) 861
AccB1I GGYRCC 1 cut(s) 844
AciI CCGC 5 cut(s) 224, 239, 330, 659, 932
AcoI YGGCCR 1 cut(s) 598
AcsI RAATTY 2 cut(s) 446, 484
AcuI CTGAAG 2 cut(s) 173, 942
AcyI GRCGYC 1 cut(s) 333
AdeI CACNNNGTG 1 cut(s) 607
AfaI GTAC 3 cut(s) 388, 418, 575
AfiI CCNNNNNNNGG 1 cut(s) 343
AgsI TTSAA 4 cut(s) 43, 169, 581, 613
AjnI CCWGG 3 cut(s) 468, 503, 515
AluBI AGCT 7 cut(s) 145, 217, 584, 616, 824, 914, 962
AluI AGCT 7 cut(s) 145, 217, 584, 616, 824, 914, 962
Alw21I GWGCWC 1 cut(s) 714
AoxI GGCC 1 cut(s) 598
ApeKI GCWGC 1 cut(s) 914
ApoI RAATTY 2 cut(s) 446, 484
AsuHPI GGTGA 2 cut(s) 228, 448
AsuII TTCGAA 1 cut(s) 80
AsuNHI GCTAGC 1 cut(s) 217
BanI GGYRCC 1 cut(s) 844
BauI CACGAG 1 cut(s) 10
BbsI GAAGAC 2 cut(s) 161, 237
Bbv12I GWGCWC 1 cut(s) 714
BbvI GCAGC 1 cut(s) 901
BccI CCATC 3 cut(s) 235, 241, 298
BceAI ACGGC 1 cut(s) 613
BcgI CGANNNNNNTGC 2 cut(s) 210, 244
BciT130I CCWGG 3 cut(s) 470, 505, 517
BclI TGATCA 1 cut(s) 184
BfaI CTAG 2 cut(s) 218, 539
BfuAI ACCTGC 1 cut(s) 861
BisI GCNGC 3 cut(s) 331, 659, 915
BlpI GCTNAGC 1 cut(s) 585
BlsI GCNGC 3 cut(s) 332, 660, 916
BmcAI AGTACT 2 cut(s) 388, 575
Bme1390I CCNGG 3 cut(s) 470, 505, 517
BmiI GGNNCC 1 cut(s) 846
BmrFI CCNGG 3 cut(s) 470, 505, 517
BmsI GCATC 1 cut(s) 136
BmtI GCTAGC 1 cut(s) 221
BpiI GAAGAC 2 cut(s) 161, 237
Bpu1102I GCTNAGC 1 cut(s) 585
Bpu14I TTCGAA 1 cut(s) 80
BpuEI CTTGAG 1 cut(s) 405
BsaHI GRCGYC 1 cut(s) 333
BsaJI CCNNGG 1 cut(s) 503
Bsc4I CCNNNNNNNGG 1 cut(s) 343
Bse1I ACTGG 1 cut(s) 384
Bse3DI GCAATG 3 cut(s) 40, 381, 497
BseBI CCWGG 3 cut(s) 470, 505, 517
BseDI CCNNGG 1 cut(s) 503
BseGI GGATG 1 cut(s) 817
BseLI CCNNNNNNNGG 1 cut(s) 343
BseMI GCAATG 3 cut(s) 40, 381, 497
BseMII CTCAG 6 cut(s) 366, 576, 654, 744, 863, 870
BseNI ACTGG 1 cut(s) 384
BseRI GAGGAG 1 cut(s) 954
BseXI GCAGC 1 cut(s) 901
BseYI CCCAGC 1 cut(s) 145
BsgI GTGCAG 1 cut(s) 749
BshFI GGCC 1 cut(s) 600
BshNI GGYRCC 1 cut(s) 844
BsiHKAI GWGCWC 1 cut(s) 714
BslFI GGGAC 1 cut(s) 320
BslI CCNNNNNNNGG 1 cut(s) 343
BsmFI GGGAC 1 cut(s) 320
BsnI GGCC 1 cut(s) 600
Bsp119I TTCGAA 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 714
Bsp143I GATC 2 cut(s) 184, 864
Bsp1720I GCTNAGC 1 cut(s) 585
BspACI CCGC 5 cut(s) 224, 239, 330, 659, 932
BspANI GGCC 1 cut(s) 600
BspCNI CTCAG 6 cut(s) 365, 577, 655, 745, 862, 871
BspLI GGNNCC 1 cut(s) 846
BspMI ACCTGC 1 cut(s) 861
BspOI GCTAGC 1 cut(s) 221
BspT104I TTCGAA 1 cut(s) 80
BspT107I GGYRCC 1 cut(s) 844
BsrDI GCAATG 3 cut(s) 40, 381, 497
BsrI ACTGG 1 cut(s) 384
BssECI CCNNGG 1 cut(s) 503
BssMI GATC 2 cut(s) 184, 864
BssNI GRCGYC 1 cut(s) 333
BssSI CACGAG 1 cut(s) 10
Bst2BI CACGAG 1 cut(s) 10
Bst2UI CCWGG 3 cut(s) 470, 505, 517
Bst6I CTCTTC 2 cut(s) 546, 972
BstACI GRCGYC 1 cut(s) 333
BstAPI GCANNNNNTGC 1 cut(s) 953
BstBI TTCGAA 1 cut(s) 80
BstC8I GCNNGC 1 cut(s) 219
BstDEI CTNAG 6 cut(s) 352, 585, 663, 753, 849, 879
BstF5I GGATG 1 cut(s) 817
BstKTI GATC 2 cut(s) 187, 867
BstMBI GATC 2 cut(s) 184, 864
BstMWI GCNNNNNNNGC 4 cut(s) 223, 238, 544, 953
BstNI CCWGG 3 cut(s) 470, 505, 517
BstSCI CCNGG 3 cut(s) 468, 503, 515
BstV1I GCAGC 1 cut(s) 901
BstV2I GAAGAC 2 cut(s) 161, 237
BsuRI GGCC 1 cut(s) 600
BtgZI GCGATG 2 cut(s) 173, 213
BtsCI GGATG 1 cut(s) 817
BveI ACCTGC 1 cut(s) 861
Cac8I GCNNGC 1 cut(s) 219
CseI GACGC 1 cut(s) 322
Csp6I GTAC 3 cut(s) 387, 417, 574
CviAII CATG 6 cut(s) 97, 182, 343, 370, 569, 923
CviQI GTAC 3 cut(s) 387, 417, 574
DdeI CTNAG 6 cut(s) 352, 585, 663, 753, 849, 879
DpnI GATC 2 cut(s) 186, 866
DpnII GATC 2 cut(s) 184, 864
DraIII CACNNNGTG 1 cut(s) 607
DrdI GACNNNNNNGTC 1 cut(s) 332
DseDI GACNNNNNNGTC 1 cut(s) 332
EaeI YGGCCR 1 cut(s) 598
Eam1104I CTCTTC 2 cut(s) 546, 972
EarI CTCTTC 2 cut(s) 546, 972
Eco57I CTGAAG 2 cut(s) 173, 942
EcoRII CCWGG 3 cut(s) 468, 503, 515
FaeI CATG 6 cut(s) 100, 185, 346, 373, 572, 926
FaqI GGGAC 1 cut(s) 320
FatI CATG 6 cut(s) 96, 181, 342, 369, 568, 922
FbaI TGATCA 1 cut(s) 184
Fnu4HI GCNGC 3 cut(s) 331, 659, 915
FokI GGATG 1 cut(s) 824
Fsp4HI GCNGC 3 cut(s) 331, 659, 915
FspBI CTAG 2 cut(s) 218, 539
GluI GCNGC 3 cut(s) 331, 659, 915
GsaI CCCAGC 1 cut(s) 149
HaeIII GGCC 1 cut(s) 600
HgaI GACGC 1 cut(s) 322
Hin1I GRCGYC 1 cut(s) 333
Hin1II CATG 6 cut(s) 100, 185, 346, 373, 572, 926
HincII GTYRAC 1 cut(s) 87
HindII GTYRAC 1 cut(s) 87
HindIII AAGCTT 1 cut(s) 614
HinfI GANTC 2 cut(s) 508, 665
HphI GGTGA 2 cut(s) 228, 448
Hpy166II GTNNAC 3 cut(s) 87, 291, 677
Hpy188I TCNGA 5 cut(s) 153, 320, 355, 513, 862
Hpy188III TCNNGA 2 cut(s) 10, 626
Hpy8I GTNNAC 3 cut(s) 87, 291, 677
Hpy99I CGWCG 1 cut(s) 289
HpyAV CCTTC 3 cut(s) 12, 349, 528
HpyCH4IV ACGT 2 cut(s) 415, 726
HpyCH4V TGCA 8 cut(s) 33, 100, 490, 547, 730, 837, 917, 947
HpyF10VI GCNNNNNNNGC 4 cut(s) 223, 238, 544, 953
HpyF3I CTNAG 6 cut(s) 352, 585, 663, 753, 849, 879
HpySE526I ACGT 2 cut(s) 415, 726
Hsp92I GRCGYC 1 cut(s) 333
Hsp92II CATG 6 cut(s) 100, 185, 346, 373, 572, 926
Ksp22I TGATCA 1 cut(s) 184
Kzo9I GATC 2 cut(s) 184, 864
LmnI GCTCC 1 cut(s) 967
Lsp1109I GCAGC 1 cut(s) 901
LweI GCATC 1 cut(s) 136
MaeI CTAG 2 cut(s) 218, 539
MaeII ACGT 2 cut(s) 415, 726
MaeIII GTNAC 4 cut(s) 398, 590, 640, 852
MalI GATC 2 cut(s) 186, 866
MboI GATC 2 cut(s) 184, 864
MboII GAAGA 6 cut(s) 157, 166, 237, 249, 563, 959
MhlI GDGCHC 1 cut(s) 714
MluCI AATT 4 cut(s) 51, 446, 484, 838
MlyI GAGTC 1 cut(s) 674
MmeI TCCRAC 2 cut(s) 143, 252
MslI CAYNNNNRTG 2 cut(s) 286, 374
MspA1I CMGCKG 2 cut(s) 330, 914
MspR9I CCNGG 3 cut(s) 470, 505, 517
MvaI CCWGG 3 cut(s) 470, 505, 517
MwoI GCNNNNNNNGC 4 cut(s) 223, 238, 544, 953
NdeII GATC 2 cut(s) 184, 864
NheI GCTAGC 1 cut(s) 217
NlaIII CATG 6 cut(s) 100, 185, 346, 373, 572, 926
NlaIV GGNNCC 1 cut(s) 846
NmuCI GTSAC 2 cut(s) 590, 852
NspV TTCGAA 1 cut(s) 80
PcsI WCGNNNNNNNCGW 2 cut(s) 293, 771
PfeI GAWTC 1 cut(s) 508
PflFI GACNNNGTC 2 cut(s) 283, 295
PkrI GCNGC 3 cut(s) 332, 660, 916
PleI GAGTC 1 cut(s) 673
PpsI GAGTC 1 cut(s) 673
Psp6I CCWGG 3 cut(s) 468, 503, 515
PspFI CCCAGC 1 cut(s) 145
PspGI CCWGG 3 cut(s) 468, 503, 515
PspN4I GGNNCC 1 cut(s) 846
PsyI GACNNNGTC 2 cut(s) 283, 295
PvuII CAGCTG 1 cut(s) 914
RsaI GTAC 3 cut(s) 388, 418, 575
RsaNI GTAC 3 cut(s) 387, 417, 574
RseI CAYNNNNRTG 2 cut(s) 286, 374
SatI GCNGC 3 cut(s) 331, 659, 915
Sau3AI GATC 2 cut(s) 184, 864
ScaI AGTACT 2 cut(s) 388, 575
SchI GAGTC 1 cut(s) 674
ScrFI CCNGG 3 cut(s) 470, 505, 517
SduI GDGCHC 1 cut(s) 714
SfaNI GCATC 1 cut(s) 136
SfuI TTCGAA 1 cut(s) 80
SmiMI CAYNNNNRTG 2 cut(s) 286, 374
SmlI CTYRAG 1 cut(s) 420
SmoI CTYRAG 1 cut(s) 420
Sse9I AATT 4 cut(s) 51, 446, 484, 838
SsiI CCGC 5 cut(s) 224, 239, 330, 659, 932
SspMI CTAG 2 cut(s) 218, 539
StyD4I CCNGG 3 cut(s) 468, 503, 515
TaiI ACGT 2 cut(s) 418, 729
TaqI TCGA 3 cut(s) 80, 260, 714
TasI AATT 4 cut(s) 51, 446, 484, 838
TatI WGTACW 2 cut(s) 386, 573
TauI GCSGC 2 cut(s) 333, 661
TfiI GAWTC 1 cut(s) 508
TseFI GTSAC 2 cut(s) 590, 852
TseI GCWGC 1 cut(s) 914
Tsp45I GTSAC 2 cut(s) 590, 852
TspDTI ATGAA 6 cut(s) 191, 331, 358, 720, 807, 939
Tth111I GACNNNGTC 2 cut(s) 283, 295
XapI RAATTY 2 cut(s) 446, 484
XspI CTAG 2 cut(s) 218, 539
ZrmI AGTACT 2 cut(s) 388, 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.