MD15G1409900.v1.1

Fantastic Four meristem regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0002468
Physical Location & Seq
Forward (+)
50962933 .. 50964039
1107 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1409900.v1.1.491

Sequence Viewer

Length: 1107 bp
ATGGATTCATCGAGTGAAAGCTATTTCTCCACTGCTAAATCCACTATCTCCTCTCTCTTTGGTTTTGTGTTGTGGGCATCATCTAGGTTACCATTATCTCCAATGCAAAGCCCAAAAGGATTTACAACTCACCAATGTCTCCAACTCGAACTGGGCCTCAAAACCCTAATTTTCCCAGAATTGGCTGATAAAACAGCCTCTCGAAATCTCGACCATTATCACCCTCACATTGTTCACAGCTTCATGGTTTCATCATCAATATCGTCTTCATCGTCGTCATCACGGTGGCAGCCTTCTTCTATCTTCTTGGATAGCACAACATCATGGTCGTCGGCTGCAATGGACGATCTGATTGGGACGGATAGCGGTGTCCAAATCATGCTACGCCCGGAACAAAATAAATTGTGGGTGGAGAATACAGCGGGATCGTCGACGTTTTCAACTCATATTAAGCGGAGACGGATTGGTACTGATCAAATACGTGATCGAAGGAAAAAGGAATACCCACCGCCAATACCACTGCTAGTACAGACACGGAATTTGACAAGTCGTATGCCCTGGAGTTTAACCAGACATTGCTACAATGGAAGGCTGGTCCTCAAAGGCGAGAAAGTGAAGCACCAGGAATATTTTGAAGCCCTCCGTGAGAATGGTCGTCTTGTCATAAACCTTGTTCATCTACACGATTATCATTTCAATGATGACGTGAAGAGCGAGGAAAATGAAGAGCTGGAAATGGAAGAAGGCCTCCAATTCAGCGAAGAAGTTGATGCGGGTGAAATTAAGGCAGAGCGATTGGATGATGATGGGGATGACGATGACTACGAGGATGATGATGAATCTGGCAACAATGTGGAGAAGGCAATGGCTTTGGCGGCATATAATTCGGTGCCTCAGTCTCATTTGGGGATGACAAGCAGGTCTATGAGGCATCAAAATCTATCCAAGCATTTCAAAAGTGAAGGTGCGATGGTGAACTTGGTGGAATCGTCATCAGTTGTTTCCCTTGGGAATGAGAGTGATCCCAATATCCCTCAAGACACCAACACTTACTTTGCACACCCAGATTCGGCTCCTCTTCTTCCCTTAATTGTTAGTGTCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

369

Amino Acids

41.4

Weight (kDa)

5.24

Isoelectric Point (pI)

57.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 167 - 224 2.2e-13 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 919
Acc36I ACCTGC 1 cut(s) 909
AccB1I GGYRCC 1 cut(s) 889
AccI GTMKAC 1 cut(s) 431
AciI CCGC 6 cut(s) 366, 422, 454, 509, 773, 875
AclWI GGATC 2 cut(s) 433, 1016
AcsI RAATTY 1 cut(s) 538
AfaI GTAC 2 cut(s) 469, 528
AfiI CCNNNNNNNGG 2 cut(s) 181, 1069
AgsI TTSAA 4 cut(s) 441, 635, 697, 955
AjiI CACGTC 1 cut(s) 706
AjnI CCWGG 2 cut(s) 557, 621
AluBI AGCT 3 cut(s) 21, 240, 730
AluI AGCT 3 cut(s) 21, 240, 730
Alw26I GTCTC 3 cut(s) 143, 451, 903
AlwI GGATC 2 cut(s) 433, 1016
AoxI GGCC 2 cut(s) 154, 745
ApeKI GCWGC 2 cut(s) 289, 335
ApoI RAATTY 1 cut(s) 538
ArsI GACNNNNNNTTYG 2 cut(s) 523, 555
AspS9I GGNCC 2 cut(s) 154, 595
AsuC2I CCSGG 1 cut(s) 389
AsuHPI GGTGA 4 cut(s) 122, 212, 788, 985
AvaII GGWCC 1 cut(s) 595
BanI GGYRCC 1 cut(s) 889
BbsI GAAGAC 1 cut(s) 258
BbvI GCAGC 2 cut(s) 301, 322
BccI CCATC 2 cut(s) 800, 964
BcgI CGANNNNNNTGC 2 cut(s) 867, 901
BciT130I CCWGG 2 cut(s) 559, 623
BclI TGATCA 1 cut(s) 472
BcnI CCSGG 1 cut(s) 389
BcoDI GTCTC 3 cut(s) 143, 451, 903
BfaI CTAG 2 cut(s) 84, 524
BfuAI ACCTGC 1 cut(s) 909
BisI GCNGC 3 cut(s) 290, 336, 876
BlsI GCNGC 3 cut(s) 291, 337, 877
Bme1390I CCNGG 3 cut(s) 389, 559, 623
Bme18I GGWCC 1 cut(s) 595
BmgBI CACGTC 1 cut(s) 706
BmgT120I GGNCC 2 cut(s) 154, 595
BmiI GGNNCC 2 cut(s) 891, 1074
BmrFI CCNGG 3 cut(s) 389, 559, 623
BmrI ACTGGG 1 cut(s) 161
BmsI GCATC 3 cut(s) 86, 760, 940
BmuI ACTGGG 1 cut(s) 161
BpiI GAAGAC 1 cut(s) 258
BpmI CTGGAG 1 cut(s) 580
BpuEI CTTGAG 1 cut(s) 1020
BpuMI CCSGG 1 cut(s) 389
BsaAI YACGTR 1 cut(s) 482
BsaJI CCNNGG 2 cut(s) 557, 1006
Bsc4I CCNNNNNNNGG 2 cut(s) 181, 1069
Bse1I ACTGG 1 cut(s) 156
Bse3DI GCAATG 3 cut(s) 345, 574, 870
BseBI CCWGG 2 cut(s) 559, 623
BseDI CCNNGG 2 cut(s) 557, 1006
BseGI GGATG 4 cut(s) 805, 817, 835, 915
BseLI CCNNNNNNNGG 2 cut(s) 181, 1069
BseMI GCAATG 3 cut(s) 345, 574, 870
BseMII CTCAG 1 cut(s) 908
BseNI ACTGG 1 cut(s) 156
BseRI GAGGAG 2 cut(s) 40, 1065
BseXI GCAGC 2 cut(s) 301, 322
BshFI GGCC 2 cut(s) 156, 747
BshNI GGYRCC 1 cut(s) 889
BsiSI CCGG 1 cut(s) 389
BslFI GGGAC 1 cut(s) 370
BslI CCNNNNNNNGG 2 cut(s) 181, 1069
BsmAI GTCTC 3 cut(s) 143, 451, 903
BsmBI CGTCTC 1 cut(s) 451
BsmFI GGGAC 1 cut(s) 370
BsnI GGCC 2 cut(s) 156, 747
Bsp143I GATC 5 cut(s) 346, 425, 472, 484, 1021
BspACI CCGC 6 cut(s) 366, 422, 454, 509, 773, 875
BspANI GGCC 2 cut(s) 156, 747
BspCNI CTCAG 1 cut(s) 907
BspLI GGNNCC 2 cut(s) 891, 1074
BspMI ACCTGC 1 cut(s) 909
BspPI GGATC 2 cut(s) 433, 1016
BspQI GCTCTTC 2 cut(s) 704, 720
BspT107I GGYRCC 1 cut(s) 889
BsrDI GCAATG 3 cut(s) 345, 574, 870
BsrI ACTGG 1 cut(s) 156
BssECI CCNNGG 2 cut(s) 557, 1006
BssMI GATC 5 cut(s) 346, 425, 472, 484, 1021
BssT1I CCWWGG 1 cut(s) 1006
Bst2UI CCWGG 2 cut(s) 559, 623
Bst4CI ACNGT 1 cut(s) 285
Bst6I CTCTTC 3 cut(s) 704, 720, 1083
BstBAI YACGTR 1 cut(s) 482
BstDEI CTNAG 1 cut(s) 894
BstEII GGTNACC 1 cut(s) 87
BstF5I GGATG 4 cut(s) 805, 817, 835, 915
BstKTI GATC 5 cut(s) 349, 428, 475, 487, 1024
BstMAI GTCTC 3 cut(s) 143, 451, 903
BstMBI GATC 5 cut(s) 346, 425, 472, 484, 1021
BstMWI GCNNNNNNNGC 1 cut(s) 875
BstNI CCWGG 2 cut(s) 559, 623
BstPI GGTNACC 1 cut(s) 87
BstSCI CCNGG 3 cut(s) 387, 557, 621
BstV1I GCAGC 2 cut(s) 301, 322
BstV2I GAAGAC 1 cut(s) 258
BsuRI GGCC 2 cut(s) 156, 747
BtgZI GCGATG 1 cut(s) 983
BtrI CACGTC 1 cut(s) 706
BtsCI GGATG 4 cut(s) 805, 817, 835, 915
BtsI GCAGTG 2 cut(s) 30, 518
BtsIMutI CAGTG 2 cut(s) 30, 518
BveI ACCTGC 1 cut(s) 909
Cfr13I GGNCC 2 cut(s) 154, 595
Csp6I GTAC 2 cut(s) 468, 527
CviAII CATG 4 cut(s) 244, 324, 379, 1102
CviQI GTAC 2 cut(s) 468, 527
DdeI CTNAG 1 cut(s) 894
DpnI GATC 5 cut(s) 348, 427, 474, 486, 1023
DpnII GATC 5 cut(s) 346, 425, 472, 484, 1021
DrdI GACNNNNNNGTC 1 cut(s) 919
DseDI GACNNNNNNGTC 1 cut(s) 919
Eam1104I CTCTTC 3 cut(s) 704, 720, 1083
EarI CTCTTC 3 cut(s) 704, 720, 1083
Eco130I CCWWGG 1 cut(s) 1006
Eco147I AGGCCT 1 cut(s) 747
Eco47I GGWCC 1 cut(s) 595
Eco91I GGTNACC 1 cut(s) 87
EcoO65I GGTNACC 1 cut(s) 87
EcoRII CCWGG 2 cut(s) 557, 621
EcoT14I CCWWGG 1 cut(s) 1006
ErhI CCWWGG 1 cut(s) 1006
Esp3I CGTCTC 1 cut(s) 451
FaeI CATG 4 cut(s) 247, 327, 382, 1105
FaqI GGGAC 1 cut(s) 370
FatI CATG 4 cut(s) 243, 323, 378, 1101
FauI CCCGC 2 cut(s) 415, 766
FbaI TGATCA 1 cut(s) 472
FblI GTMKAC 1 cut(s) 431
Fnu4HI GCNGC 3 cut(s) 290, 336, 876
FokI GGATG 4 cut(s) 812, 824, 842, 922
Fsp4HI GCNGC 3 cut(s) 290, 336, 876
FspBI CTAG 2 cut(s) 84, 524
GluI GCNGC 3 cut(s) 290, 336, 876
GsuI CTGGAG 1 cut(s) 580
HaeIII GGCC 2 cut(s) 156, 747
HapII CCGG 1 cut(s) 389
Hin1II CATG 4 cut(s) 247, 327, 382, 1105
HincII GTYRAC 1 cut(s) 432
HindII GTYRAC 1 cut(s) 432
HinfI GANTC 4 cut(s) 5, 839, 986, 1067
HpaII CCGG 1 cut(s) 389
HphI GGTGA 4 cut(s) 122, 212, 788, 985
Hpy166II GTNNAC 3 cut(s) 235, 432, 976
Hpy188I TCNGA 1 cut(s) 351
Hpy188III TCNNGA 3 cut(s) 201, 209, 1037
Hpy8I GTNNAC 3 cut(s) 235, 432, 976
Hpy99I CGWCG 4 cut(s) 277, 334, 433, 436
HpyAV CCTTC 6 cut(s) 303, 483, 582, 737, 853, 956
HpyCH4III ACNGT 1 cut(s) 285
HpyCH4IV ACGT 3 cut(s) 434, 481, 705
HpyCH4V TGCA 3 cut(s) 106, 338, 1058
HpyF10VI GCNNNNNNNGC 1 cut(s) 875
HpyF3I CTNAG 1 cut(s) 894
HpySE526I ACGT 3 cut(s) 434, 481, 705
Hsp92II CATG 4 cut(s) 247, 327, 382, 1105
Ksp22I TGATCA 1 cut(s) 472
Kzo9I GATC 5 cut(s) 346, 425, 472, 484, 1021
LguI GCTCTTC 2 cut(s) 704, 720
LmnI GCTCC 1 cut(s) 1078
Lsp1109I GCAGC 2 cut(s) 301, 322
LweI GCATC 3 cut(s) 86, 760, 940
MaeI CTAG 2 cut(s) 84, 524
MaeII ACGT 3 cut(s) 434, 481, 705
MaeIII GTNAC 1 cut(s) 87
MalI GATC 5 cut(s) 348, 427, 474, 486, 1023
MboI GATC 5 cut(s) 346, 425, 472, 484, 1021
MboII GAAGA 9 cut(s) 258, 288, 295, 721, 737, 752, 773, 1070, 1073
MluCI AATT 8 cut(s) 168, 179, 401, 538, 752, 780, 883, 1089
MmeI TCCRAC 1 cut(s) 166
MseI TTAA 4 cut(s) 450, 566, 783, 1088
MslI CAYNNNNRTG 2 cut(s) 283, 696
MspA1I CMGCKG 1 cut(s) 422
MspI CCGG 1 cut(s) 389
MspR9I CCNGG 3 cut(s) 389, 559, 623
MvaI CCWGG 2 cut(s) 559, 623
MwoI GCNNNNNNNGC 1 cut(s) 875
NciI CCSGG 1 cut(s) 389
NdeII GATC 5 cut(s) 346, 425, 472, 484, 1021
NlaIII CATG 4 cut(s) 247, 327, 382, 1105
NlaIV GGNNCC 2 cut(s) 891, 1074
PceI AGGCCT 1 cut(s) 747
PciSI GCTCTTC 2 cut(s) 704, 720
PcsI WCGNNNNNNNCGW 3 cut(s) 269, 711, 822
PfeI GAWTC 4 cut(s) 5, 839, 986, 1067
PkrI GCNGC 3 cut(s) 291, 337, 877
Ppu21I YACGTR 1 cut(s) 482
Psp6I CCWGG 2 cut(s) 557, 621
PspEI GGTNACC 1 cut(s) 87
PspGI CCWGG 2 cut(s) 557, 621
PspN4I GGNNCC 2 cut(s) 891, 1074
PspPI GGNCC 2 cut(s) 154, 595
RsaI GTAC 2 cut(s) 469, 528
RsaNI GTAC 2 cut(s) 468, 527
RseI CAYNNNNRTG 2 cut(s) 283, 696
SalI GTCGAC 1 cut(s) 430
SapI GCTCTTC 2 cut(s) 704, 720
SaqAI TTAA 4 cut(s) 450, 566, 783, 1088
SatI GCNGC 3 cut(s) 290, 336, 876
Sau3AI GATC 5 cut(s) 346, 425, 472, 484, 1021
Sau96I GGNCC 2 cut(s) 154, 595
ScrFI CCNGG 3 cut(s) 389, 559, 623
SfaNI GCATC 3 cut(s) 86, 760, 940
SgrDI CGTCGACG 1 cut(s) 430
SinI GGWCC 1 cut(s) 595
SmiMI CAYNNNNRTG 2 cut(s) 283, 696
SmlI CTYRAG 1 cut(s) 1035
SmoI CTYRAG 1 cut(s) 1035
Sse9I AATT 8 cut(s) 168, 179, 401, 538, 752, 780, 883, 1089
SseBI AGGCCT 1 cut(s) 747
SsiI CCGC 6 cut(s) 366, 422, 454, 509, 773, 875
SspI AATATT 1 cut(s) 629
SspMI CTAG 2 cut(s) 84, 524
StuI AGGCCT 1 cut(s) 747
StyD4I CCNGG 3 cut(s) 387, 557, 621
StyI CCWWGG 1 cut(s) 1006
TaaI ACNGT 1 cut(s) 285
TaiI ACGT 3 cut(s) 437, 484, 708
TaqI TCGA 6 cut(s) 11, 147, 202, 210, 431, 487
TasI AATT 8 cut(s) 168, 179, 401, 538, 752, 780, 883, 1089
TatI WGTACW 1 cut(s) 526
TauI GCSGC 1 cut(s) 878
TfiI GAWTC 4 cut(s) 5, 839, 986, 1067
Tru1I TTAA 4 cut(s) 450, 566, 783, 1088
Tru9I TTAA 4 cut(s) 450, 566, 783, 1088
TscAI CASTG 2 cut(s) 37, 525
TseI GCWGC 2 cut(s) 289, 335
TspDTI ATGAA 6 cut(s) 232, 240, 258, 665, 738, 852
TspGWI ACGGA 4 cut(s) 374, 475, 550, 632
TspRI CASTG 2 cut(s) 37, 525
VpaK11BI GGWCC 1 cut(s) 595
XapI RAATTY 1 cut(s) 538
XmiI GTMKAC 1 cut(s) 431
XspI CTAG 2 cut(s) 84, 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.