Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005008.1

Orthogroup ID

OG0002468

Physical Location & Seq

Genomic Coordinates Reverse (-)

79437 .. 80348

Gene Structure 912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005008.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

atgcaaaccccaaaagattcgacgcatcaaaacctcaagttgggtctcaaaaccctaattttcaaccctaaatcccataatcaccgccacatcgttcacaagaactacaagctcgcgccaccatcgccatcttcgcagtcttcactcacttattcgtggtcgttattggataactcatcgtcgtggacatcgtctatgttggacgacttgctcggaacagacagtggcgtcgcctacatgacaacctcaaacgacgatatcttaatgtcaatgacgaccagtactgctcgcagttaccccaagaagaaaagtactcgaggaagcggaagggtgaaaagggaatttccaccaccaataccgcttctggcacaaacggggaatttgcaatgtcgcatgccttggaatctgactaagcattattctaatggaaggctagttttgaaaggagagaaagcacagcaccatgagtacttcgaagccgaacgtgacagcggccgccttgtgttgaagcttgtgcctctggacagcaccatactaacgacttatgatgtgcctgaatcgtccggtggacatttggacgtgtgtgaggaaaacgatgaagagcttgaaatggaaaacgtgcagtttacaaaagaagactacgctgaggatgagaatgatgatgctgatgatgacgaagatgatgatgatgatgatgatgaatgtgacaacaatgtggatgagagtaaaactatgttggtttgcaattcggtccctcagtcacactcggagatcagcaggtgtgatgagaaatatggaaatctgccgatgtttttcacgaagtcagctgcaagtgtccatgaacaaccgcaaaactactttgcacaccctgcttcagctcctcttcgtccaatgactgctgtgaagaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAF

Protein Analysis

303

Amino Acids

34.09

Weight (kDa)

4.91

Isoelectric Point (pI)

52.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22110 AT1G22110 AT1G22110 AT1G77932
fragaria_vesca	FvH4_5g38140 FvH4_5g38160 FvH4_5g38160 FvH4_5g38160
malus_domestica	MD08G1176500.v1.1 MD08G1219800.v1.1 MD15G1363200.v1.1 MD15G1408400.v1.1 MD15G1409900.v1.1
prunus_persica	Prupe.1G096600_v2.0.a1 Prupe.1G510300_v2.0.a1 Prupe.1G510900_v2.0.a1 Prupe.1G552400_v2.0.a1
pyrus_communis	pycom08g19080 pycom15g32490
rosa_chinensis	RchiOBHm_Chr7g0240121
rosa_laevigata	RLG00000000700 RLG00000000701
rosa_multiflora	Rmu_sc0005008.1_g000021 Rmu_sc0005008.1_g000024
rosa_roxburghii	Rroxscaffold_3G00220390 Rroxscaffold_3G00220400
rosa_rugosa	Rorug04G0113200 Rorug07G0333300 Rorug07G0333500 Rorug07G0333600 Rorug07G0333700 Rorug07G0333800
rosa_samantha	Rh7AG487000 Rh7AG487200 Rh7BG459700 Rh7CG503800 Rh7CG503900 Rh7DG472100 Rh7DG472200
rosa_wichuraiana	Rw7G040810 Rw7G040820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	768
AasI	GACNNNNNNGTC	1 cut(s)	227
Acc36I	ACCTGC	1 cut(s)	768
AccII	CGCG	1 cut(s)	116
AciI	CCGC	6 cut(s)	85, 324, 359, 492, 496, 848
AcoI	YGGCCR	1 cut(s)	493
AcsI	RAATTY	2 cut(s)	341, 379
AcuI	CTGAAG	1 cut(s)	858
AcyI	GRCGYC	1 cut(s)	228
AfaI	GTAC	3 cut(s)	283, 313, 470
AfiI	CCNNNNNNNGG	1 cut(s)	40
AflIII	ACRYGT	1 cut(s)	579
AgsI	TTSAA	4 cut(s)	64, 442, 508, 608
AjiI	CACGTC	1 cut(s)	580
AluBI	AGCT	5 cut(s)	112, 511, 604, 827, 878
AluI	AGCT	5 cut(s)	112, 511, 604, 827, 878
Alw26I	GTCTC	1 cut(s)	50
Ama87I	CYCGRG	1 cut(s)	315
AoxI	GGCC	1 cut(s)	493
ApeKI	GCWGC	1 cut(s)	827
ApoI	RAATTY	2 cut(s)	341, 379
AspLEI	GCGC	1 cut(s)	118
AspS9I	GGNCC	1 cut(s)	751
AsuHPI	GGTGA	2 cut(s)	74, 343
AsuII	TTCGAA	1 cut(s)	474
AvaI	CYCGRG	1 cut(s)	315
AvaII	GGWCC	1 cut(s)	751
BbsI	GAAGAC	2 cut(s)	132, 642
BbvCI	CCTCAGC	1 cut(s)	645
BbvI	GCAGC	1 cut(s)	814
BccI	CCATC	2 cut(s)	130, 136
BcoDI	GTCTC	1 cut(s)	50
BfaI	CTAG	1 cut(s)	434
BfuAI	ACCTGC	1 cut(s)	768
BisI	GCNGC	3 cut(s)	493, 496, 828
BlsI	GCNGC	3 cut(s)	494, 497, 829
BmcAI	AGTACT	3 cut(s)	283, 313, 470
Bme18I	GGWCC	1 cut(s)	751
BmeT110I	CYCGRG	1 cut(s)	315
BmgBI	CACGTC	1 cut(s)	580
BmgT120I	GGNCC	1 cut(s)	751
BmiI	GGNNCC	1 cut(s)	753
BmsI	GCATC	2 cut(s)	34, 652
BpiI	GAAGAC	2 cut(s)	132, 642
Bpu10I	CCTNAGC	1 cut(s)	645
Bpu14I	TTCGAA	1 cut(s)	474
BpuEI	CTTGAG	1 cut(s)	20
BsaHI	GRCGYC	1 cut(s)	228
BsaI	GGTCTC	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	398
BsaWI	WCCGGW	1 cut(s)	563
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse1I	ACTGG	1 cut(s)	279
Bse3DI	GCAATG	1 cut(s)	392
BseDI	CCNNGG	1 cut(s)	398
BseGI	GGATG	2 cut(s)	655, 724
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMI	GCAATG	1 cut(s)	392
BseMII	CTCAG	2 cut(s)	636, 770
BseNI	ACTGG	1 cut(s)	279
BseRI	GAGGAG	1 cut(s)	870
BseX3I	CGGCCG	1 cut(s)	493
BseXI	GCAGC	1 cut(s)	814
BsgI	GTGCAG	1 cut(s)	641
Bsh1236I	CGCG	1 cut(s)	116
Bsh1285I	CGRYCG	1 cut(s)	496
BshFI	GGCC	1 cut(s)	495
BsiEI	CGRYCG	1 cut(s)	496
BsiHKCI	CYCGRG	1 cut(s)	315
BsiSI	CCGG	1 cut(s)	564
BslFI	GGGAC	1 cut(s)	737
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmAI	GTCTC	1 cut(s)	50
BsmFI	GGGAC	1 cut(s)	737
BsnI	GGCC	1 cut(s)	495
Bso31I	GGTCTC	1 cut(s)	50
BsoBI	CYCGRG	1 cut(s)	315
Bsp119I	TTCGAA	1 cut(s)	474
Bsp143I	GATC	1 cut(s)	771
BspACI	CCGC	6 cut(s)	85, 324, 359, 492, 496, 848
BspANI	GGCC	1 cut(s)	495
BspCNI	CTCAG	2 cut(s)	637, 769
BspFNI	CGCG	1 cut(s)	116
BspLI	GGNNCC	1 cut(s)	753
BspMI	ACCTGC	1 cut(s)	768
BspQI	GCTCTTC	1 cut(s)	594
BspT104I	TTCGAA	1 cut(s)	474
BspTNI	GGTCTC	1 cut(s)	50
BsrDI	GCAATG	1 cut(s)	392
BsrI	ACTGG	1 cut(s)	279
BssECI	CCNNGG	1 cut(s)	398
BssMI	GATC	1 cut(s)	771
BssNI	GRCGYC	1 cut(s)	228
BssT1I	CCWWGG	1 cut(s)	398
Bst4CI	ACNGT	1 cut(s)	224
Bst6I	CTCTTC	2 cut(s)	594, 888
BstACI	GRCGYC	1 cut(s)	228
BstAPI	GCANNNNNTGC	1 cut(s)	869
BstBI	TTCGAA	1 cut(s)	474
BstC8I	GCNNGC	3 cut(s)	114, 289, 395
BstDEI	CTNAG	3 cut(s)	411, 645, 756
BstF5I	GGATG	2 cut(s)	655, 724
BstFNI	CGCG	1 cut(s)	116
BstHHI	GCGC	1 cut(s)	118
BstKTI	GATC	1 cut(s)	774
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	1 cut(s)	771
BstMCI	CGRYCG	1 cut(s)	496
BstMWI	GCNNNNNNNGC	3 cut(s)	124, 133, 869
BstNSI	RCATGY	1 cut(s)	397
BstUI	CGCG	1 cut(s)	116
BstV1I	GCAGC	1 cut(s)	814
BstV2I	GAAGAC	2 cut(s)	132, 642
BstZI	CGGCCG	1 cut(s)	493
BsuRI	GGCC	1 cut(s)	495
BtgZI	GCGATG	1 cut(s)	108
BtrI	CACGTC	1 cut(s)	580
BtsCI	GGATG	2 cut(s)	655, 724
BtsIMutI	CAGTG	1 cut(s)	229
BveI	ACCTGC	1 cut(s)	768
Cac8I	GCNNGC	3 cut(s)	114, 289, 395
CciNI	GCGGCCGC	1 cut(s)	493
CfoI	GCGC	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	751
CseI	GACGC	2 cut(s)	31, 217
Csp6I	GTAC	3 cut(s)	282, 312, 469
CviAII	CATG	4 cut(s)	238, 394, 464, 839
CviJI	RGCY	8 cut(s)	112, 433, 479, 495, 511, 604, 827, 878
CviKI_1	RGCY	8 cut(s)	112, 433, 479, 495, 511, 604, 827, 878
CviQI	GTAC	3 cut(s)	282, 312, 469
DdeI	CTNAG	3 cut(s)	411, 645, 756
DpnI	GATC	1 cut(s)	773
DpnII	GATC	1 cut(s)	771
DrdI	GACNNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	227
EaeI	YGGCCR	1 cut(s)	493
EagI	CGGCCG	1 cut(s)	493
Eam1104I	CTCTTC	2 cut(s)	594, 888
EarI	CTCTTC	2 cut(s)	594, 888
EclXI	CGGCCG	1 cut(s)	493
Eco130I	CCWWGG	1 cut(s)	398
Eco31I	GGTCTC	1 cut(s)	50
Eco32I	GATATC	1 cut(s)	259
Eco47I	GGWCC	1 cut(s)	751
Eco52I	CGGCCG	1 cut(s)	493
Eco57I	CTGAAG	1 cut(s)	858
Eco88I	CYCGRG	1 cut(s)	315
EcoRV	GATATC	1 cut(s)	259
EcoT14I	CCWWGG	1 cut(s)	398
ErhI	CCWWGG	1 cut(s)	398
FaeI	CATG	4 cut(s)	241, 397, 467, 842
FaqI	GGGAC	1 cut(s)	737
FatI	CATG	4 cut(s)	237, 393, 463, 838
Fnu4HI	GCNGC	3 cut(s)	493, 496, 828
FokI	GGATG	2 cut(s)	662, 731
Fsp4HI	GCNGC	3 cut(s)	493, 496, 828
FspBI	CTAG	1 cut(s)	434
GlaI	GCGC	1 cut(s)	117
GluI	GCNGC	3 cut(s)	493, 496, 828
HaeIII	GGCC	1 cut(s)	495
HapII	CCGG	1 cut(s)	564
HgaI	GACGC	2 cut(s)	31, 217
HhaI	GCGC	1 cut(s)	118
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	4 cut(s)	241, 397, 467, 842
Hin6I	GCGC	1 cut(s)	116
HinP1I	GCGC	1 cut(s)	116
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	3 cut(s)	17, 403, 557
HpaII	CCGG	1 cut(s)	564
HphI	GGTGA	2 cut(s)	74, 343
Hpy166II	GTNNAC	4 cut(s)	97, 186, 569, 627
Hpy188I	TCNGA	3 cut(s)	215, 408, 769
Hpy188III	TCNNGA	2 cut(s)	521, 817
Hpy8I	GTNNAC	4 cut(s)	97, 186, 569, 627
Hpy99I	CGWCG	4 cut(s)	25, 184, 233, 257
HpyAV	CCTTC	2 cut(s)	321, 423
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4IV	ACGT	3 cut(s)	484, 579, 618
HpyCH4V	TGCA	6 cut(s)	4, 385, 622, 744, 830, 863
HpyF10VI	GCNNNNNNNGC	3 cut(s)	124, 133, 869
HpyF3I	CTNAG	3 cut(s)	411, 645, 756
HpySE526I	ACGT	3 cut(s)	484, 579, 618
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	4 cut(s)	241, 397, 467, 842
HspAI	GCGC	1 cut(s)	116
Kzo9I	GATC	1 cut(s)	771
LguI	GCTCTTC	1 cut(s)	594
LmnI	GCTCC	1 cut(s)	883
LpnPI	CCDG	7 cut(s)	292, 350, 506, 567, 577, 763, 882
Lsp1109I	GCAGC	1 cut(s)	814
LweI	GCATC	2 cut(s)	34, 652
MaeI	CTAG	1 cut(s)	434
MaeII	ACGT	3 cut(s)	484, 579, 618
MaeIII	GTNAC	4 cut(s)	293, 485, 704, 759
MalI	GATC	1 cut(s)	773
MboI	GATC	1 cut(s)	771
MboII	GAAGA	7 cut(s)	123, 132, 316, 611, 647, 689, 875
MluCI	AATT	5 cut(s)	57, 341, 379, 745, 907
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	8 cut(s)	44, 256, 311, 528, 580, 640, 765, 891
MseI	TTAA	1 cut(s)	263
MslI	CAYNNNNRTG	1 cut(s)	181
MspA1I	CMGCKG	2 cut(s)	492, 827
MspI	CCGG	1 cut(s)	564
MvnI	CGCG	1 cut(s)	116
MwoI	GCNNNNNNNGC	3 cut(s)	124, 133, 869
NdeII	GATC	1 cut(s)	771
NlaIII	CATG	4 cut(s)	241, 397, 467, 842
NlaIV	GGNNCC	1 cut(s)	753
NmuCI	GTSAC	3 cut(s)	485, 704, 759
NotI	GCGGCCGC	1 cut(s)	493
NspI	RCATGY	1 cut(s)	397
NspV	TTCGAA	1 cut(s)	474
PaeI	GCATGC	1 cut(s)	397
PaeR7I	CTCGAG	1 cut(s)	315
PaqCI	CACCTGC	1 cut(s)	768
PciSI	GCTCTTC	1 cut(s)	594
PcsI	WCGNNNNNNNCGW	1 cut(s)	188
PfeI	GAWTC	3 cut(s)	17, 403, 557
PflFI	GACNNNGTC	1 cut(s)	190
PkrI	GCNGC	3 cut(s)	494, 497, 829
PspN4I	GGNNCC	1 cut(s)	753
PspPI	GGNCC	1 cut(s)	751
PspXI	VCTCGAGB	1 cut(s)	315
PsyI	GACNNNGTC	1 cut(s)	190
PvuII	CAGCTG	1 cut(s)	827
RsaI	GTAC	3 cut(s)	283, 313, 470
RsaNI	GTAC	3 cut(s)	282, 312, 469
RseI	CAYNNNNRTG	1 cut(s)	181
SapI	GCTCTTC	1 cut(s)	594
SaqAI	TTAA	1 cut(s)	263
SatI	GCNGC	3 cut(s)	493, 496, 828
Sau3AI	GATC	1 cut(s)	771
Sau96I	GGNCC	1 cut(s)	751
ScaI	AGTACT	3 cut(s)	283, 313, 470
SfaNI	GCATC	2 cut(s)	34, 652
Sfr274I	CTCGAG	1 cut(s)	315
SfuI	TTCGAA	1 cut(s)	474
SinI	GGWCC	1 cut(s)	751
SlaI	CTCGAG	1 cut(s)	315
SmiMI	CAYNNNNRTG	1 cut(s)	181
SmlI	CTYRAG	2 cut(s)	35, 315
SmoI	CTYRAG	2 cut(s)	35, 315
SphI	GCATGC	1 cut(s)	397
Sse9I	AATT	5 cut(s)	57, 341, 379, 745, 907
SsiI	CCGC	6 cut(s)	85, 324, 359, 492, 496, 848
SspMI	CTAG	1 cut(s)	434
StyI	CCWWGG	1 cut(s)	398
TaaI	ACNGT	1 cut(s)	224
TaiI	ACGT	3 cut(s)	487, 582, 621
TaqI	TCGA	3 cut(s)	20, 316, 474
TaqII	GACCGA	1 cut(s)	739
TasI	AATT	5 cut(s)	57, 341, 379, 745, 907
TatI	WGTACW	3 cut(s)	281, 311, 468
TauI	GCSGC	2 cut(s)	495, 498
TfiI	GAWTC	3 cut(s)	17, 403, 557
Tru1I	TTAA	1 cut(s)	263
Tru9I	TTAA	1 cut(s)	263
TscAI	CASTG	1 cut(s)	229
TseFI	GTSAC	3 cut(s)	485, 704, 759
TseI	GCWGC	1 cut(s)	827
Tsp45I	GTSAC	3 cut(s)	485, 704, 759
TspDTI	ATGAA	3 cut(s)	612, 714, 855
TspRI	CASTG	1 cut(s)	229
Tth111I	GACNNNGTC	1 cut(s)	190
VpaK11BI	GGWCC	1 cut(s)	751
XapI	RAATTY	2 cut(s)	341, 379
XceI	RCATGY	1 cut(s)	397
XhoI	CTCGAG	1 cut(s)	315
XspI	CTAG	1 cut(s)	434
ZrmI	AGTACT	3 cut(s)	283, 313, 470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.