Rorug07G0333800

Fantastic Four meristem regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0002468
Physical Location & Seq
Forward (+)
36619918 .. 36621993
2076 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0333800.1

Sequence Viewer

Length: 375 bp
ATGGGTTTGAGAAAGCTAATTAACCATCAAAAGTGCAGGCAGTCATATATCTTTCTTGCATCTTTGGTTCTCGGATTTGCCTGTGTAATTCAGCAAGTGCAAGAGGCCTCCAAGTACAAGGTGTTAAGAAGCTTCACATCTCAGGCATTGAAAACTTCCAGAATGCACAGTATTAGTTGTGTCACCTATGAAGCCAGATTCCTCTGCTTCAACAATTCTGTAGACATGAGGAAGGCGAATATGGATTTTTTGCATCCATGTACTGCTAATAGAGTAACTGAGCTTCCCGGGTTTAAAGATGAAGTTCATATCAGTGTATACCCATCCTCTTCACTCCCTCATGTTTATCAGTGGCATTCCGGAGCAGATCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

124

Amino Acids

14.22

Weight (kDa)

9.4

Isoelectric Point (pI)

43.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 222, 318
AccIII TCCGGA 1 cut(s) 359
AfaI GTAC 2 cut(s) 116, 262
AgsI TTSAA 2 cut(s) 151, 211
AluBI AGCT 3 cut(s) 16, 132, 283
AluI AGCT 3 cut(s) 16, 132, 283
Ama87I CYCGRG 1 cut(s) 287
Aor13HI TCCGGA 1 cut(s) 359
AoxI GGCC 1 cut(s) 105
AsuC2I CCSGG 2 cut(s) 288, 289
AsuHPI GGTGA 1 cut(s) 175
AvaI CYCGRG 1 cut(s) 287
BarI GAAGNNNNNNTAC 2 cut(s) 267, 299
BccI CCATC 2 cut(s) 33, 331
BcnI CCSGG 2 cut(s) 288, 289
BfmI CTRYAG 1 cut(s) 219
Bme1390I CCNGG 2 cut(s) 288, 289
BmeT110I CYCGRG 1 cut(s) 287
BmrFI CCNGG 2 cut(s) 288, 289
BmsI GCATC 2 cut(s) 68, 262
BpuMI CCSGG 2 cut(s) 288, 289
BsaJI CCNNGG 1 cut(s) 287
BsaWI WCCGGW 1 cut(s) 359
BseAI TCCGGA 1 cut(s) 359
BseDI CCNNGG 1 cut(s) 287
BseGI GGATG 2 cut(s) 253, 323
BseMII CTCAG 2 cut(s) 155, 270
BsgI GTGCAG 1 cut(s) 55
BshFI GGCC 1 cut(s) 107
BsiHKCI CYCGRG 1 cut(s) 287
BsiSI CCGG 2 cut(s) 288, 360
BsmI GAATGC 2 cut(s) 168, 355
BsnI GGCC 1 cut(s) 107
BsoBI CYCGRG 1 cut(s) 287
Bsp13I TCCGGA 1 cut(s) 359
Bsp143I GATC 1 cut(s) 367
BspANI GGCC 1 cut(s) 107
BspCNI CTCAG 2 cut(s) 154, 271
BspEI TCCGGA 1 cut(s) 359
BssECI CCNNGG 1 cut(s) 287
BssMI GATC 1 cut(s) 367
BssNAI GTATAC 1 cut(s) 319
Bst1107I GTATAC 1 cut(s) 319
Bst4CI ACNGT 1 cut(s) 170
Bst6I CTCTTC 1 cut(s) 334
BstC8I GCNNGC 1 cut(s) 38
BstDEI CTNAG 2 cut(s) 141, 279
BstF5I GGATG 2 cut(s) 253, 323
BstKTI GATC 1 cut(s) 370
BstMBI GATC 1 cut(s) 367
BstSCI CCNGG 2 cut(s) 286, 287
BstSFI CTRYAG 1 cut(s) 219
BstZ17I GTATAC 1 cut(s) 319
BsuRI GGCC 1 cut(s) 107
BtsCI GGATG 2 cut(s) 253, 323
BtsIMutI CAGTG 2 cut(s) 319, 356
Cac8I GCNNGC 1 cut(s) 38
Cfr9I CCCGGG 1 cut(s) 287
Csp6I GTAC 2 cut(s) 115, 261
CviAII CATG 3 cut(s) 226, 258, 341
CviJI RGCY 5 cut(s) 16, 107, 132, 194, 283
CviKI_1 RGCY 5 cut(s) 16, 107, 132, 194, 283
CviQI GTAC 2 cut(s) 115, 261
DdeI CTNAG 2 cut(s) 141, 279
DpnI GATC 1 cut(s) 369
DpnII GATC 1 cut(s) 367
DraI TTTAAA 1 cut(s) 295
Eam1104I CTCTTC 1 cut(s) 334
EarI CTCTTC 1 cut(s) 334
Eco147I AGGCCT 1 cut(s) 107
Eco88I CYCGRG 1 cut(s) 287
FaeI CATG 3 cut(s) 229, 261, 344
FaiI YATR 9 cut(s) 46, 48, 189, 227, 242, 259, 309, 319, 342
FatI CATG 3 cut(s) 225, 257, 340
FblI GTMKAC 2 cut(s) 222, 318
FokI GGATG 2 cut(s) 240, 310
HaeIII GGCC 1 cut(s) 107
HapII CCGG 2 cut(s) 288, 360
Hin1II CATG 3 cut(s) 229, 261, 344
HindIII AAGCTT 1 cut(s) 130
HinfI GANTC 1 cut(s) 198
HpaII CCGG 2 cut(s) 288, 360
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 2 cut(s) 223, 319
Hpy188I TCNGA 1 cut(s) 74
Hpy188III TCNNGA 2 cut(s) 159, 360
Hpy8I GTNNAC 2 cut(s) 223, 319
HpyAV CCTTC 1 cut(s) 226
HpyCH4III ACNGT 1 cut(s) 170
HpyCH4V TGCA 5 cut(s) 36, 59, 100, 166, 253
HpyF3I CTNAG 2 cut(s) 141, 279
Hsp92II CATG 3 cut(s) 229, 261, 344
Kpn2I TCCGGA 1 cut(s) 359
Kzo9I GATC 1 cut(s) 367
LmnI GCTCC 1 cut(s) 362
LpnPI CCDG 6 cut(s) 22, 94, 128, 172, 208, 301
LweI GCATC 2 cut(s) 68, 262
MaeIII GTNAC 2 cut(s) 181, 274
MalI GATC 1 cut(s) 369
MboI GATC 1 cut(s) 367
MboII GAAGA 1 cut(s) 321
MluCI AATT 3 cut(s) 18, 87, 214
MnlI CCTC 6 cut(s) 97, 118, 212, 222, 337, 348
MroI TCCGGA 1 cut(s) 359
MseI TTAA 3 cut(s) 21, 125, 294
MslI CAYNNNNRTG 1 cut(s) 312
MspI CCGG 2 cut(s) 288, 360
MspR9I CCNGG 2 cut(s) 288, 289
Mva1269I GAATGC 2 cut(s) 168, 355
NciI CCSGG 2 cut(s) 288, 289
NdeII GATC 1 cut(s) 367
NlaIII CATG 3 cut(s) 229, 261, 344
NmuCI GTSAC 1 cut(s) 181
PceI AGGCCT 1 cut(s) 107
PctI GAATGC 2 cut(s) 168, 355
PfeI GAWTC 1 cut(s) 198
RsaI GTAC 2 cut(s) 116, 262
RsaNI GTAC 2 cut(s) 115, 261
RseI CAYNNNNRTG 1 cut(s) 312
SaqAI TTAA 3 cut(s) 21, 125, 294
Sau3AI GATC 1 cut(s) 367
ScrFI CCNGG 2 cut(s) 288, 289
SetI ASST 5 cut(s) 18, 123, 134, 188, 285
SfaNI GCATC 2 cut(s) 68, 262
SfcI CTRYAG 1 cut(s) 219
SmaI CCCGGG 1 cut(s) 289
SmiMI CAYNNNNRTG 1 cut(s) 312
Sse9I AATT 3 cut(s) 18, 87, 214
SseBI AGGCCT 1 cut(s) 107
StuI AGGCCT 1 cut(s) 107
StyD4I CCNGG 2 cut(s) 286, 287
TaaI ACNGT 1 cut(s) 170
TasI AATT 3 cut(s) 18, 87, 214
TatI WGTACW 2 cut(s) 114, 260
TfiI GAWTC 1 cut(s) 198
Tru1I TTAA 3 cut(s) 21, 125, 294
Tru9I TTAA 3 cut(s) 21, 125, 294
TscAI CASTG 2 cut(s) 319, 356
TseFI GTSAC 1 cut(s) 181
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 3 cut(s) 204, 296, 315
TspMI CCCGGG 1 cut(s) 287
TspRI CASTG 2 cut(s) 319, 356
XmaI CCCGGG 1 cut(s) 287
XmiI GTMKAC 2 cut(s) 222, 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.