AT1G77932

structural constituent of ribosome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002468
Physical Location & Seq
Reverse (-)
29302716 .. 29303519
804 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G77932.1

Sequence Viewer

Length: 333 bp
ATGTCATCTCTCTCCTACAACGGAGGCTACATTGGAAAAGAGAGCTGCTTCAACGCTTTCTCCGACAAGACCGGTGATGTCAAGTTGCCATGTGAGAGAAGAGAGGAGAAAAAGACAGTGGCGCGTGAGATAATGTCACCTCCAATGTTGCCGTCGCACGTGCCGTCGGTGCTGAAGCGAGAGTACACGAGTGATGGTCGGCTTTTACTCAAGGAAGAGAAAGTGTGTCGCAACGAGTATTTTCGAGCTCACAGATCCAACGGTCGTCTCATGATCCAGCTCGTCTCTCTTGATGAAGATGATGATCGGGATTCGGATGTTAAGAATTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
FAF Ribosomal_L7Ae

Protein Analysis

110

Amino Acids

12.62

Weight (kDa)

6.73

Isoelectric Point (pI)

51.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 47 - 94 1.8e-13 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 124
AclWI GGATC 2 cut(s) 249, 268
AcuI CTGAAG 1 cut(s) 194
AcvI CACGTG 1 cut(s) 160
AfaI GTAC 1 cut(s) 185
AgeI ACCGGT 1 cut(s) 71
AgsI TTSAA 1 cut(s) 52
AluBI AGCT 3 cut(s) 45, 248, 280
AluI AGCT 3 cut(s) 45, 248, 280
Alw21I GWGCWC 1 cut(s) 250
Alw26I GTCTC 2 cut(s) 272, 289
AlwI GGATC 2 cut(s) 249, 268
ApeKI GCWGC 1 cut(s) 45
AsiGI ACCGGT 1 cut(s) 71
AspLEI GCGC 1 cut(s) 124
AsuHPI GGTGA 2 cut(s) 86, 129
BanII GRGCYC 1 cut(s) 250
BarI GAAGNNNNNNTAC 2 cut(s) 167, 199
BauI CACGAG 1 cut(s) 187
BbrPI CACGTG 1 cut(s) 160
Bbv12I GWGCWC 1 cut(s) 250
BbvI GCAGC 1 cut(s) 32
BccI CCATC 1 cut(s) 188
BceAI ACGGC 2 cut(s) 136, 148
BcoDI GTCTC 2 cut(s) 272, 289
BisI GCNGC 1 cut(s) 46
BlsI GCNGC 1 cut(s) 47
BpuEI CTTGAG 1 cut(s) 194
BsaAI YACGTR 1 cut(s) 160
BsaBI GATNNNNATC 1 cut(s) 303
BsaWI WCCGGW 1 cut(s) 71
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bse118I RCCGGY 1 cut(s) 71
Bse8I GATNNNNATC 1 cut(s) 303
BseGI GGATG 1 cut(s) 322
BseJI GATNNNNATC 1 cut(s) 303
BseRI GAGGAG 1 cut(s) 119
BseXI GCAGC 1 cut(s) 32
Bsh1236I CGCG 1 cut(s) 124
Bsh1285I CGRYCG 1 cut(s) 265
BshTI ACCGGT 1 cut(s) 71
BsiEI CGRYCG 1 cut(s) 265
BsiHKAI GWGCWC 1 cut(s) 250
BsiSI CCGG 1 cut(s) 72
BsmAI GTCTC 2 cut(s) 272, 289
BsmBI CGTCTC 2 cut(s) 272, 289
Bsp1286I GDGCHC 1 cut(s) 250
Bsp143I GATC 3 cut(s) 254, 273, 304
BspFNI CGCG 1 cut(s) 124
BspHI TCATGA 1 cut(s) 270
BspPI GGATC 2 cut(s) 249, 268
BsrFI RCCGGY 1 cut(s) 71
BssAI RCCGGY 1 cut(s) 71
BssMI GATC 3 cut(s) 254, 273, 304
BssSI CACGAG 1 cut(s) 187
Bst2BI CACGAG 1 cut(s) 187
Bst4CI ACNGT 2 cut(s) 118, 263
Bst6I CTCTTC 2 cut(s) 94, 210
BstBAI YACGTR 1 cut(s) 160
BstF5I GGATG 1 cut(s) 322
BstFNI CGCG 1 cut(s) 124
BstHHI GCGC 1 cut(s) 124
BstKTI GATC 3 cut(s) 257, 276, 307
BstMAI GTCTC 2 cut(s) 272, 289
BstMBI GATC 3 cut(s) 254, 273, 304
BstMCI CGRYCG 1 cut(s) 265
BstMWI GCNNNNNNNGC 1 cut(s) 169
BstUI CGCG 1 cut(s) 124
BstV1I GCAGC 1 cut(s) 32
BstX2I RGATCY 1 cut(s) 254
BstYI RGATCY 1 cut(s) 254
BtsCI GGATG 1 cut(s) 322
BtsIMutI CAGTG 1 cut(s) 123
CciI TCATGA 1 cut(s) 270
CfoI GCGC 1 cut(s) 124
Cfr10I RCCGGY 1 cut(s) 71
Csp6I GTAC 1 cut(s) 184
CspAI ACCGGT 1 cut(s) 71
CviAII CATG 2 cut(s) 90, 271
CviJI RGCY 5 cut(s) 27, 45, 202, 248, 280
CviKI_1 RGCY 5 cut(s) 27, 45, 202, 248, 280
CviQI GTAC 1 cut(s) 184
DpnI GATC 3 cut(s) 256, 275, 306
DpnII GATC 3 cut(s) 254, 273, 304
Eam1104I CTCTTC 2 cut(s) 94, 210
EarI CTCTTC 2 cut(s) 94, 210
Ecl136II GAGCTC 1 cut(s) 248
Eco24I GRGCYC 1 cut(s) 250
Eco53kI GAGCTC 1 cut(s) 248
Eco57I CTGAAG 1 cut(s) 194
Eco72I CACGTG 1 cut(s) 160
EcoICRI GAGCTC 1 cut(s) 248
EcoT38I GRGCYC 1 cut(s) 250
Esp3I CGTCTC 2 cut(s) 272, 289
FaeI CATG 2 cut(s) 93, 274
FaiI YATR 2 cut(s) 91, 272
FatI CATG 2 cut(s) 89, 270
Fnu4HI GCNGC 1 cut(s) 46
FokI GGATG 1 cut(s) 329
FriOI GRGCYC 1 cut(s) 250
Fsp4HI GCNGC 1 cut(s) 46
GlaI GCGC 1 cut(s) 123
GluI GCNGC 1 cut(s) 46
HapII CCGG 1 cut(s) 72
HhaI GCGC 1 cut(s) 124
Hin1II CATG 2 cut(s) 93, 274
Hin6I GCGC 1 cut(s) 122
HinP1I GCGC 1 cut(s) 122
HinfI GANTC 1 cut(s) 311
HpaII CCGG 1 cut(s) 72
HphI GGTGA 2 cut(s) 86, 129
Hpy166II GTNNAC 1 cut(s) 186
Hpy188I TCNGA 2 cut(s) 64, 316
Hpy188III TCNNGA 3 cut(s) 271, 290, 308
Hpy8I GTNNAC 1 cut(s) 186
Hpy99I CGWCG 2 cut(s) 157, 169
HpyCH4III ACNGT 2 cut(s) 118, 263
HpyCH4IV ACGT 1 cut(s) 159
HpyF10VI GCNNNNNNNGC 1 cut(s) 169
HpySE526I ACGT 1 cut(s) 159
Hsp92II CATG 2 cut(s) 93, 274
HspAI GCGC 1 cut(s) 122
Kzo9I GATC 3 cut(s) 254, 273, 304
LpnPI CCDG 2 cut(s) 85, 290
Lsp1109I GCAGC 1 cut(s) 32
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 1 cut(s) 135
MalI GATC 3 cut(s) 256, 275, 306
MboI GATC 3 cut(s) 254, 273, 304
MboII GAAGA 3 cut(s) 111, 227, 308
MflI RGATCY 1 cut(s) 254
MhlI GDGCHC 1 cut(s) 250
MluCI AATT 1 cut(s) 325
MmeI TCCRAC 2 cut(s) 87, 282
MnlI CCTC 3 cut(s) 17, 97, 150
MseI TTAA 1 cut(s) 321
MspI CCGG 1 cut(s) 72
MvnI CGCG 1 cut(s) 124
MwoI GCNNNNNNNGC 1 cut(s) 169
NdeII GATC 3 cut(s) 254, 273, 304
NlaIII CATG 2 cut(s) 93, 274
NmuCI GTSAC 1 cut(s) 135
PagI TCATGA 1 cut(s) 270
PcsI WCGNNNNNNNCGW 2 cut(s) 60, 161
PfeI GAWTC 1 cut(s) 311
PinAI ACCGGT 1 cut(s) 71
PkrI GCNGC 1 cut(s) 47
PmaCI CACGTG 1 cut(s) 160
PmlI CACGTG 1 cut(s) 160
Ppu21I YACGTR 1 cut(s) 160
Psp124BI GAGCTC 1 cut(s) 250
PspCI CACGTG 1 cut(s) 160
PsuI RGATCY 1 cut(s) 254
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
SacI GAGCTC 1 cut(s) 250
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 1 cut(s) 46
Sau3AI GATC 3 cut(s) 254, 273, 304
SduI GDGCHC 1 cut(s) 250
SetI ASST 5 cut(s) 47, 142, 162, 250, 282
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 1 cut(s) 325
SstI GAGCTC 1 cut(s) 250
TaaI ACNGT 2 cut(s) 118, 263
TaiI ACGT 1 cut(s) 162
TaqI TCGA 1 cut(s) 244
TasI AATT 1 cut(s) 325
TatI WGTACW 1 cut(s) 183
TfiI GAWTC 1 cut(s) 311
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TscAI CASTG 1 cut(s) 123
TseFI GTSAC 1 cut(s) 135
TseI GCWGC 1 cut(s) 45
Tsp45I GTSAC 1 cut(s) 135
TspDTI ATGAA 1 cut(s) 309
TspGWI ACGGA 1 cut(s) 36
TspRI CASTG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.