Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002468

Physical Location & Seq

Genomic Coordinates Reverse (-)

36575772 .. 36578259

Gene Structure 2488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0333600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGTGTGGAACAAGGTTGATAAGGTGAGCGATCCTGACAGCATCAGAACAGAAGCAGAAAAGAGAGATGATGTTGTTTGCATATCTGCTTTGAGTAGCCAGGGCTTGAATGATTTCTGCAGTGCAATCCAGGAAAAATTGAAGGACTCTATGGTATGGGTGGAAGCCTTGATCCCATTTGAAAAAGGAGAGCTTCTTAGTACCATACATAAGGTTGGAATGGTGGAGAGAACAGTGCTACTCAAAACTCCATTTGAGTTGCACAGGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAF

Protein Analysis

90

Amino Acids

10.27

Weight (kDa)

5.3

Isoelectric Point (pI)

23.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HflX_C	PF19275	15 - 76	2.6e-06	HflX C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22110 AT1G22110 AT1G22110 AT1G77932
fragaria_vesca	FvH4_5g38140 FvH4_5g38160 FvH4_5g38160 FvH4_5g38160
malus_domestica	MD08G1176500.v1.1 MD08G1219800.v1.1 MD15G1363200.v1.1 MD15G1408400.v1.1 MD15G1409900.v1.1
prunus_persica	Prupe.1G096600_v2.0.a1 Prupe.1G510300_v2.0.a1 Prupe.1G510900_v2.0.a1 Prupe.1G552400_v2.0.a1
pyrus_communis	pycom08g19080 pycom15g32490
rosa_chinensis	RchiOBHm_Chr7g0240121
rosa_laevigata	RLG00000000700 RLG00000000701
rosa_multiflora	Rmu_sc0005008.1_g000021 Rmu_sc0005008.1_g000024
rosa_roxburghii	Rroxscaffold_3G00220390 Rroxscaffold_3G00220400
rosa_rugosa	Rorug04G0113200 Rorug07G0333300 Rorug07G0333500 Rorug07G0333600 Rorug07G0333700 Rorug07G0333800
rosa_samantha	Rh7AG487000 Rh7AG487200 Rh7BG459700 Rh7CG503800 Rh7CG503900 Rh7DG472100 Rh7DG472200
rosa_wichuraiana	Rw7G040810 Rw7G040820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	26, 166
AfaI	GTAC	2 cut(s)	202, 269
AgsI	TTSAA	3 cut(s)	109, 142, 182
AjnI	CCWGG	2 cut(s)	99, 129
AluBI	AGCT	1 cut(s)	193
AluI	AGCT	1 cut(s)	193
AlwI	GGATC	2 cut(s)	26, 166
Asp700I	GAANNNNTTC	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	37
BciT130I	CCWGG	2 cut(s)	101, 131
BfmI	CTRYAG	1 cut(s)	118
Bme1390I	CCNGG	2 cut(s)	101, 131
BmrFI	CCNGG	2 cut(s)	101, 131
BmsI	GCATC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	100
BseBI	CCWGG	2 cut(s)	101, 131
BseDI	CCNNGG	1 cut(s)	100
Bsp143I	GATC	2 cut(s)	31, 171
BspMAI	CTGCAG	1 cut(s)	122
BspPI	GGATC	2 cut(s)	26, 166
BssECI	CCNNGG	1 cut(s)	100
BssMI	GATC	2 cut(s)	31, 171
Bst2UI	CCWGG	2 cut(s)	101, 131
Bst4CI	ACNGT	1 cut(s)	235
BstDEI	CTNAG	1 cut(s)	197
BstKTI	GATC	2 cut(s)	34, 174
BstMBI	GATC	2 cut(s)	31, 171
BstNI	CCWGG	2 cut(s)	101, 131
BstSCI	CCNGG	2 cut(s)	99, 129
BstSFI	CTRYAG	1 cut(s)	118
BtsI	GCAGTG	1 cut(s)	127
BtsIMutI	CAGTG	2 cut(s)	127, 240
Csp6I	GTAC	2 cut(s)	201, 268
CviJI	RGCY	4 cut(s)	99, 105, 167, 193
CviKI_1	RGCY	4 cut(s)	99, 105, 167, 193
CviQI	GTAC	2 cut(s)	201, 268
DdeI	CTNAG	1 cut(s)	197
DpnI	GATC	2 cut(s)	33, 173
DpnII	GATC	2 cut(s)	31, 171
EcoRII	CCWGG	2 cut(s)	99, 129
FaiI	YATR	5 cut(s)	83, 152, 157, 206, 210
FalI	AAGNNNNNCTT	2 cut(s)	177, 209
HinfI	GANTC	1 cut(s)	146
HphI	GGTGA	1 cut(s)	37
Hpy188I	TCNGA	1 cut(s)	47
Hpy188III	TCNNGA	1 cut(s)	35
HpyAV	CCTTC	1 cut(s)	136
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4V	TGCA	4 cut(s)	81, 120, 125, 262
HpyF3I	CTNAG	1 cut(s)	197
Kzo9I	GATC	2 cut(s)	31, 171
LpnPI	CCDG	6 cut(s)	48, 86, 113, 116, 143, 250
LweI	GCATC	1 cut(s)	51
MalI	GATC	2 cut(s)	33, 173
MboI	GATC	2 cut(s)	31, 171
MluCI	AATT	1 cut(s)	137
MlyI	GAGTC	1 cut(s)	140
MmeI	TCCRAC	1 cut(s)	196
MroXI	GAANNNNTTC	1 cut(s)	113
MspR9I	CCNGG	2 cut(s)	101, 131
MvaI	CCWGG	2 cut(s)	101, 131
NdeII	GATC	2 cut(s)	31, 171
PdmI	GAANNNNTTC	1 cut(s)	113
PfoI	TCCNGGA	1 cut(s)	129
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
Psp6I	CCWGG	2 cut(s)	99, 129
PspGI	CCWGG	2 cut(s)	99, 129
PstI	CTGCAG	1 cut(s)	122
RsaI	GTAC	2 cut(s)	202, 269
RsaNI	GTAC	2 cut(s)	201, 268
Sau3AI	GATC	2 cut(s)	31, 171
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	2 cut(s)	101, 131
SetI	ASST	5 cut(s)	18, 27, 195, 216, 269
SfaNI	GCATC	1 cut(s)	51
SfcI	CTRYAG	1 cut(s)	118
SgeI	CNNG	8 cut(s)	25, 47, 112, 113, 118, 142, 143, 181
Sse9I	AATT	1 cut(s)	137
StyD4I	CCNGG	2 cut(s)	99, 129
TaaI	ACNGT	1 cut(s)	235
TasI	AATT	1 cut(s)	137
TscAI	CASTG	2 cut(s)	127, 240
TspRI	CASTG	2 cut(s)	127, 240
XmnI	GAANNNNTTC	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.