Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005319

Physical Location & Seq

Genomic Coordinates Forward (+)

6453303 .. 6454018

Gene Structure 716 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G18740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGTTGCGGAGAAGAAGGCGAAGAAGTCCCATGAAGGAATCAACAGCAGATTAGCTCTTGTGATGAAGAGTGGAAAGTACACTCTTGGATACAAGTCTGTTCTCAAATCCCTTCGCAGCTCCAAAGGTAAGCTGATATTGATATCTAGCAATTGCCCACCGTTGAGAAGGTCAGAGATTGAATACTATGCGATGCTTGCTAAAGTTGGAGTTCATCGCTACAATGGCAACAATGTTGATTTGGGTACTGCTTGTGGTAAATACTTCCGAGTTTCTTGCCTCAGCATCGTTGATCCTGGTGATTCCGACATCATCAAGACACTTCCTGGAGATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

112

Amino Acids

12.28

Weight (kDa)

9.71

Isoelectric Point (pI)

42.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	14 - 105	9.5e-24	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36240 AT1G77940 AT3G18740
fragaria_vesca	FvH4_5g28040 FvH4_5g38130 FvH4_7g04710
malus_domestica	MD08G1176600.v1.1 MD15G1363000.v1.1 MD15G1431500.v1.1
prunus_persica	Prupe.1G096700_v2.0.a1 Prupe.1G511000_v2.0.a1
pyrus_communis	pycom08g15150 pycom15g32500 pycom15g38130
rosa_chinensis	RchiOBHm_Chr6g0275411 RchiOBHm_Chr7g0240111
rosa_laevigata	RLG00000000705 RLG00000013464
rosa_multiflora	Rmu_sc0005008.1_g000029 Rmu_sc0007358.1_g000013
rosa_roxburghii	Rroxscaffold_3G00220410 Rroxscaffold_7G00193340
rosa_rugosa	Rorug06G0091900 Rorug07G0333300
rosa_samantha	Rh6BG208400 Rh6DG200900 Rh7AG486900
rosa_wichuraiana	Rw6G017820 Rw7G040800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	8
AclWI	GGATC	1 cut(s)	287
AfaI	GTAC	2 cut(s)	80, 247
AgsI	TTSAA	1 cut(s)	182
AjnI	CCWGG	2 cut(s)	295, 325
AluBI	AGCT	3 cut(s)	56, 120, 133
AluI	AGCT	3 cut(s)	56, 120, 133
AlwI	GGATC	1 cut(s)	287
ApeKI	GCWGC	1 cut(s)	117
AsuHPI	GGTGA	1 cut(s)	311
BbvCI	CCTCAGC	1 cut(s)	281
BbvI	GCAGC	1 cut(s)	129
BcgI	CGANNNNNNTGC	2 cut(s)	258, 292
BciT130I	CCWGG	2 cut(s)	297, 327
BciVI	GTATCC	1 cut(s)	83
BfaI	CTAG	1 cut(s)	147
BfuI	GTATCC	1 cut(s)	83
BisI	GCNGC	1 cut(s)	118
BlsI	GCNGC	1 cut(s)	119
Bme1390I	CCNGG	2 cut(s)	297, 327
BmrFI	CCNGG	2 cut(s)	297, 327
BmsI	GCATC	2 cut(s)	183, 294
Bpu10I	CCTNAGC	1 cut(s)	281
BseBI	CCWGG	2 cut(s)	297, 327
BseMII	CTCAG	1 cut(s)	295
BseXI	GCAGC	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	13
BsmFI	GGGAC	1 cut(s)	13
Bsp143I	GATC	2 cut(s)	292, 331
BspACI	CCGC	1 cut(s)	8
BspCNI	CTCAG	1 cut(s)	294
BspPI	GGATC	1 cut(s)	287
BssMI	GATC	2 cut(s)	292, 331
Bst2UI	CCWGG	2 cut(s)	297, 327
Bst4CI	ACNGT	1 cut(s)	162
Bst6I	CTCTTC	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	198
BstDEI	CTNAG	1 cut(s)	281
BstKTI	GATC	2 cut(s)	295, 334
BstMBI	GATC	2 cut(s)	292, 331
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 225
BstNI	CCWGG	2 cut(s)	297, 327
BstSCI	CCNGG	2 cut(s)	295, 325
BstV1I	GCAGC	1 cut(s)	129
BsuI	GTATCC	1 cut(s)	83
BtgZI	GCGATG	2 cut(s)	200, 206
Cac8I	GCNNGC	1 cut(s)	198
Csp6I	GTAC	2 cut(s)	79, 246
CviAII	CATG	1 cut(s)	32
CviJI	RGCY	3 cut(s)	56, 120, 133
CviKI_1	RGCY	3 cut(s)	56, 120, 133
CviQI	GTAC	2 cut(s)	79, 246
DdeI	CTNAG	1 cut(s)	281
DpnI	GATC	2 cut(s)	294, 333
DpnII	GATC	2 cut(s)	292, 331
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Eco32I	GATATC	1 cut(s)	144
EcoRII	CCWGG	2 cut(s)	295, 325
EcoRV	GATATC	1 cut(s)	144
FaeI	CATG	1 cut(s)	35
FaiI	YATR	2 cut(s)	33, 189
FaqI	GGGAC	1 cut(s)	13
FatI	CATG	1 cut(s)	31
Fnu4HI	GCNGC	1 cut(s)	118
Fsp4HI	GCNGC	1 cut(s)	118
FspBI	CTAG	1 cut(s)	147
GluI	GCNGC	1 cut(s)	118
Hin1II	CATG	1 cut(s)	35
HinfI	GANTC	2 cut(s)	39, 302
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	1 cut(s)	81
Hpy188I	TCNGA	3 cut(s)	175, 269, 307
Hpy188III	TCNNGA	1 cut(s)	316
Hpy8I	GTNNAC	1 cut(s)	81
HpyAV	CCTTC	4 cut(s)	10, 29, 122, 162
HpyCH4III	ACNGT	1 cut(s)	162
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 225
HpyF3I	CTNAG	1 cut(s)	281
Hsp92II	CATG	1 cut(s)	35
Kzo9I	GATC	2 cut(s)	292, 331
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	3 cut(s)	282, 309, 312
Lsp1109I	GCAGC	1 cut(s)	129
LweI	GCATC	2 cut(s)	183, 294
MaeI	CTAG	1 cut(s)	147
MalI	GATC	2 cut(s)	294, 333
MboI	GATC	2 cut(s)	292, 331
MboII	GAAGA	3 cut(s)	25, 34, 79
MfeI	CAATTG	1 cut(s)	151
MluCI	AATT	1 cut(s)	151
MmeI	TCCRAC	2 cut(s)	187, 330
MnlI	CCTC	1 cut(s)	290
MspR9I	CCNGG	2 cut(s)	297, 327
MunI	CAATTG	1 cut(s)	151
MvaI	CCWGG	2 cut(s)	297, 327
MwoI	GCNNNNNNNGC	2 cut(s)	197, 225
NdeII	GATC	2 cut(s)	292, 331
NlaIII	CATG	1 cut(s)	35
PfeI	GAWTC	2 cut(s)	39, 302
PfoI	TCCNGGA	1 cut(s)	325
PkrI	GCNGC	1 cut(s)	119
Psp6I	CCWGG	2 cut(s)	295, 325
PspGI	CCWGG	2 cut(s)	295, 325
RsaI	GTAC	2 cut(s)	80, 247
RsaNI	GTAC	2 cut(s)	79, 246
SatI	GCNGC	1 cut(s)	118
Sau3AI	GATC	2 cut(s)	292, 331
ScrFI	CCNGG	2 cut(s)	297, 327
SetI	ASST	5 cut(s)	58, 122, 130, 135, 173
SfaNI	GCATC	2 cut(s)	183, 294
Sse9I	AATT	1 cut(s)	151
SsiI	CCGC	1 cut(s)	8
SspMI	CTAG	1 cut(s)	147
StyD4I	CCNGG	2 cut(s)	295, 325
TaaI	ACNGT	1 cut(s)	162
TasI	AATT	1 cut(s)	151
TatI	WGTACW	1 cut(s)	78
TfiI	GAWTC	2 cut(s)	39, 302
TseI	GCWGC	1 cut(s)	117
TspDTI	ATGAA	3 cut(s)	48, 80, 203
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.