Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0005319

Physical Location & Seq

Genomic Coordinates Reverse (-)

21432773 .. 21443326

Gene Structure 10554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1176600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGTGGCTCCGAAGAAGACGAAGAAGACCCACGAGAGCATCAATACCAGGCTCGCGCTGGTCATGAAGAGTGGCAAATACACTCTCGGCTACAAGACCGTCATCGATTCCCTCCGCAACTCCAAAGGGAAGCTGATTATCATTTCCAACAATTGCCCGCCTCTGCGGAAATCTGAGATCGAGTACTATGCTATGCTCGCCAAGGTTGGGGTTCACCACTACAATGGAAACAACGTTGAGCTCGGTACAGCATGTGGAAAGTATTTCCGGGTGTCTTGCCTTAGCATCATTGATGCAGGTGATTCGGATATTATCAAGACACTGCCTGGTGGTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

113

Amino Acids

12.29

Weight (kDa)

9.62

Isoelectric Point (pI)

39.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	13 - 105	1.3e-24	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36240 AT1G77940 AT3G18740
fragaria_vesca	FvH4_5g28040 FvH4_5g38130 FvH4_7g04710
malus_domestica	MD08G1176600.v1.1 MD15G1363000.v1.1 MD15G1431500.v1.1
prunus_persica	Prupe.1G096700_v2.0.a1 Prupe.1G511000_v2.0.a1
pyrus_communis	pycom08g15150 pycom15g32500 pycom15g38130
rosa_chinensis	RchiOBHm_Chr6g0275411 RchiOBHm_Chr7g0240111
rosa_laevigata	RLG00000000705 RLG00000013464
rosa_multiflora	Rmu_sc0005008.1_g000029 Rmu_sc0007358.1_g000013
rosa_roxburghii	Rroxscaffold_3G00220410 Rroxscaffold_7G00193340
rosa_rugosa	Rorug06G0091900 Rorug07G0333300
rosa_samantha	Rh6BG208400 Rh6DG200900 Rh7AG486900
rosa_wichuraiana	Rw6G017820 Rw7G040800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	287
Acc36I	ACCTGC	1 cut(s)	287
AccII	CGCG	1 cut(s)	56
AciI	CCGC	3 cut(s)	115, 158, 166
AclI	AACGTT	1 cut(s)	234
AfaI	GTAC	2 cut(s)	185, 247
AfiI	CCNNNNNNNGG	1 cut(s)	207
AjnI	CCWGG	2 cut(s)	47, 325
AluBI	AGCT	2 cut(s)	133, 241
AluI	AGCT	2 cut(s)	133, 241
Alw21I	GWGCWC	1 cut(s)	243
AspLEI	GCGC	1 cut(s)	58
AsuC2I	CCSGG	1 cut(s)	269
AsuHPI	GGTGA	2 cut(s)	206, 311
BanII	GRGCYC	1 cut(s)	243
BauI	CACGAG	1 cut(s)	32
BbsI	GAAGAC	2 cut(s)	23, 32
Bbv12I	GWGCWC	1 cut(s)	243
BcgI	CGANNNNNNTGC	4 cut(s)	170, 204, 285, 319
BciT130I	CCWGG	2 cut(s)	49, 327
BcnI	CCSGG	1 cut(s)	269
BfuAI	ACCTGC	1 cut(s)	287
BmcAI	AGTACT	1 cut(s)	185
Bme1390I	CCNGG	3 cut(s)	49, 269, 327
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	3 cut(s)	49, 269, 327
BmsI	GCATC	3 cut(s)	48, 283, 294
BpiI	GAAGAC	2 cut(s)	23, 32
Bpu10I	CCTNAGC	1 cut(s)	281
BpuMI	CCSGG	1 cut(s)	269
Bsa29I	ATCGAT	1 cut(s)	105
BsaJI	CCNNGG	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
BseBI	CCWGG	2 cut(s)	49, 327
BseCI	ATCGAT	1 cut(s)	105
BseDI	CCNNGG	1 cut(s)	201
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseMII	CTCAG	1 cut(s)	165
Bsh1236I	CGCG	1 cut(s)	56
BshVI	ATCGAT	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	243
BsiSI	CCGG	1 cut(s)	268
BslI	CCNNNNNNNGG	1 cut(s)	207
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp143I	GATC	1 cut(s)	177
BspACI	CCGC	3 cut(s)	115, 158, 166
BspCNI	CTCAG	1 cut(s)	166
BspDI	ATCGAT	1 cut(s)	105
BspFNI	CGCG	1 cut(s)	56
BspHI	TCATGA	1 cut(s)	63
BspLI	GGNNCC	1 cut(s)	9
BspMI	ACCTGC	1 cut(s)	287
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	1 cut(s)	177
BssSI	CACGAG	1 cut(s)	32
BssT1I	CCWWGG	1 cut(s)	201
Bst2BI	CACGAG	1 cut(s)	32
Bst2UI	CCWGG	2 cut(s)	49, 327
Bst4CI	ACNGT	1 cut(s)	100
Bst6I	CTCTTC	1 cut(s)	62
BstC8I	GCNNGC	3 cut(s)	54, 158, 198
BstDEI	CTNAG	2 cut(s)	174, 281
BstFNI	CGCG	1 cut(s)	56
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	1 cut(s)	180
BstMBI	GATC	1 cut(s)	177
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNI	CCWGG	2 cut(s)	49, 327
BstNSI	RCATGY	1 cut(s)	255
BstSCI	CCNGG	3 cut(s)	47, 267, 325
BstUI	CGCG	1 cut(s)	56
BstV2I	GAAGAC	2 cut(s)	23, 32
BstXI	CCANNNNNNTGG	1 cut(s)	224
Bsu15I	ATCGAT	1 cut(s)	105
BsuTUI	ATCGAT	1 cut(s)	105
BtsI	GCAGTG	1 cut(s)	320
BtsIMutI	CAGTG	1 cut(s)	320
BveI	ACCTGC	1 cut(s)	287
Cac8I	GCNNGC	3 cut(s)	54, 158, 198
CciI	TCATGA	1 cut(s)	63
CfoI	GCGC	1 cut(s)	58
ClaI	ATCGAT	1 cut(s)	105
Csp6I	GTAC	2 cut(s)	184, 246
CviAII	CATG	2 cut(s)	64, 252
CviJI	RGCY	5 cut(s)	8, 52, 90, 133, 241
CviKI_1	RGCY	5 cut(s)	8, 52, 90, 133, 241
CviQI	GTAC	2 cut(s)	184, 246
DdeI	CTNAG	2 cut(s)	174, 281
DpnI	GATC	1 cut(s)	179
DpnII	GATC	1 cut(s)	177
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Ecl136II	GAGCTC	1 cut(s)	241
Eco130I	CCWWGG	1 cut(s)	201
Eco24I	GRGCYC	1 cut(s)	243
Eco53kI	GAGCTC	1 cut(s)	241
EcoICRI	GAGCTC	1 cut(s)	241
EcoRII	CCWGG	2 cut(s)	47, 325
EcoT14I	CCWWGG	1 cut(s)	201
EcoT38I	GRGCYC	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	2 cut(s)	67, 255
FaiI	YATR	4 cut(s)	65, 189, 194, 253
FatI	CATG	2 cut(s)	63, 251
FauI	CCCGC	1 cut(s)	165
FriOI	GRGCYC	1 cut(s)	243
GlaI	GCGC	1 cut(s)	57
HapII	CCGG	1 cut(s)	268
HhaI	GCGC	1 cut(s)	58
Hin1II	CATG	2 cut(s)	67, 255
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HinfI	GANTC	2 cut(s)	107, 302
HpaII	CCGG	1 cut(s)	268
HphI	GGTGA	2 cut(s)	206, 311
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	3 cut(s)	12, 175, 307
Hpy188III	TCNNGA	2 cut(s)	64, 316
Hpy8I	GTNNAC	1 cut(s)	214
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	1 cut(s)	296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	2 cut(s)	174, 281
HpySE526I	ACGT	1 cut(s)	234
Hsp92II	CATG	2 cut(s)	67, 255
HspAI	GCGC	1 cut(s)	56
Kzo9I	GATC	1 cut(s)	177
LmnI	GCTCC	1 cut(s)	13
LpnPI	CCDG	6 cut(s)	34, 44, 61, 281, 282, 312
LweI	GCATC	3 cut(s)	48, 283, 294
MaeII	ACGT	1 cut(s)	234
MalI	GATC	1 cut(s)	179
MboI	GATC	1 cut(s)	177
MboII	GAAGA	5 cut(s)	25, 28, 34, 37, 79
MfeI	CAATTG	1 cut(s)	151
MhlI	GDGCHC	1 cut(s)	243
MluCI	AATT	1 cut(s)	151
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	2 cut(s)	122, 171
MslI	CAYNNNNRTG	1 cut(s)	222
MspI	CCGG	1 cut(s)	268
MspR9I	CCNGG	3 cut(s)	49, 269, 327
MunI	CAATTG	1 cut(s)	151
MvaI	CCWGG	2 cut(s)	49, 327
MvnI	CGCG	1 cut(s)	56
MwoI	GCNNNNNNNGC	1 cut(s)	197
NciI	CCSGG	1 cut(s)	269
NdeII	GATC	1 cut(s)	177
NlaIII	CATG	2 cut(s)	67, 255
NlaIV	GGNNCC	1 cut(s)	9
NmeAIII	GCCGAG	1 cut(s)	66
NspI	RCATGY	1 cut(s)	255
PagI	TCATGA	1 cut(s)	63
PaqCI	CACCTGC	1 cut(s)	287
PfeI	GAWTC	2 cut(s)	107, 302
Psp124BI	GAGCTC	1 cut(s)	243
Psp1406I	AACGTT	1 cut(s)	234
Psp6I	CCWGG	2 cut(s)	47, 325
PspGI	CCWGG	2 cut(s)	47, 325
PspN4I	GGNNCC	1 cut(s)	9
RsaI	GTAC	2 cut(s)	185, 247
RsaNI	GTAC	2 cut(s)	184, 246
RseI	CAYNNNNRTG	1 cut(s)	222
SacI	GAGCTC	1 cut(s)	243
Sau3AI	GATC	1 cut(s)	177
ScaI	AGTACT	1 cut(s)	185
ScrFI	CCNGG	3 cut(s)	49, 269, 327
SduI	GDGCHC	1 cut(s)	243
SetI	ASST	5 cut(s)	135, 207, 237, 243, 301
SfaNI	GCATC	3 cut(s)	48, 283, 294
SmiMI	CAYNNNNRTG	1 cut(s)	222
Sse9I	AATT	1 cut(s)	151
SsiI	CCGC	3 cut(s)	115, 158, 166
SstI	GAGCTC	1 cut(s)	243
StyD4I	CCNGG	3 cut(s)	47, 267, 325
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	1 cut(s)	100
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	2 cut(s)	105, 180
TasI	AATT	1 cut(s)	151
TatI	WGTACW	1 cut(s)	183
TfiI	GAWTC	2 cut(s)	107, 302
TscAI	CASTG	1 cut(s)	327
TspDTI	ATGAA	1 cut(s)	80
TspRI	CASTG	1 cut(s)	327
XceI	RCATGY	1 cut(s)	255
XcmI	CCANNNNNNNNNTGG	1 cut(s)	55
ZrmI	AGTACT	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.