Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005319

Physical Location & Seq

Genomic Coordinates Reverse (-)

29303864 .. 29305411

Gene Structure 1548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G77940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGTGACGGAAAAGAAAACGAAGAAGTCTCATGAGGGTATCAACAGTAGGTTGGCTCTTGTTATGAAGAGTGGTAAATACACTCTTGGTTACAAGTCTGTTCTCAAATCCCTCCGTGGCTCCAAAGGGAAACTGATTCTAATCTCCACCAATTGCCCACCGTTGAGAAGATCAGAGATTGAGTACTACGCAATGCTCGCTAAAGTTGGTGTCCACCATTACAATGGAAATAACGTTGATTTGGGAACAGCTTGCGGAAAGTACTTCCGTGTTTCTTGTCTGAGCATTGTTGATCCTGGTGATTCTGACATTATCAAGTCAATTCCTGGTGACCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

112

Amino Acids

12.29

Weight (kDa)

9.62

Isoelectric Point (pI)

36.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	14 - 105	8.1e-24	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36240 AT1G77940 AT3G18740
fragaria_vesca	FvH4_5g28040 FvH4_5g38130 FvH4_7g04710
malus_domestica	MD08G1176600.v1.1 MD15G1363000.v1.1 MD15G1431500.v1.1
prunus_persica	Prupe.1G096700_v2.0.a1 Prupe.1G511000_v2.0.a1
pyrus_communis	pycom08g15150 pycom15g32500 pycom15g38130
rosa_chinensis	RchiOBHm_Chr6g0275411 RchiOBHm_Chr7g0240111
rosa_laevigata	RLG00000000705 RLG00000013464
rosa_multiflora	Rmu_sc0005008.1_g000029 Rmu_sc0007358.1_g000013
rosa_roxburghii	Rroxscaffold_3G00220410 Rroxscaffold_7G00193340
rosa_rugosa	Rorug06G0091900 Rorug07G0333300
rosa_samantha	Rh6BG208400 Rh6DG200900 Rh7AG486900
rosa_wichuraiana	Rw6G017820 Rw7G040800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	255
AclI	AACGTT	1 cut(s)	234
AclWI	GGATC	1 cut(s)	287
AfaI	GTAC	2 cut(s)	185, 263
AjnI	CCWGG	2 cut(s)	295, 325
AluBI	AGCT	1 cut(s)	251
AluI	AGCT	1 cut(s)	251
Alw26I	GTCTC	1 cut(s)	33
AlwI	GGATC	1 cut(s)	287
AsuHPI	GGTGA	2 cut(s)	16, 311
BciT130I	CCWGG	2 cut(s)	297, 327
BcoDI	GTCTC	1 cut(s)	33
BmcAI	AGTACT	2 cut(s)	185, 263
Bme1390I	CCNGG	2 cut(s)	297, 327
BmiI	GGNNCC	1 cut(s)	121
BmrFI	CCNGG	2 cut(s)	297, 327
BsaBI	GATNNNNATC	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	115
Bse1I	ACTGG	1 cut(s)	334
Bse3DI	GCAATG	1 cut(s)	198
Bse8I	GATNNNNATC	1 cut(s)	140
BseBI	CCWGG	2 cut(s)	297, 327
BseDI	CCNNGG	1 cut(s)	115
BseJI	GATNNNNATC	1 cut(s)	140
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	1 cut(s)	272
BseNI	ACTGG	1 cut(s)	334
BsmAI	GTCTC	1 cut(s)	33
Bsp143I	GATC	2 cut(s)	170, 292
BspACI	CCGC	1 cut(s)	255
BspCNI	CTCAG	1 cut(s)	273
BspHI	TCATGA	1 cut(s)	31
BspLI	GGNNCC	1 cut(s)	121
BspPI	GGATC	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	334
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	2 cut(s)	170, 292
Bst2UI	CCWGG	2 cut(s)	297, 327
Bst4CI	ACNGT	2 cut(s)	47, 162
Bst6I	CTCTTC	1 cut(s)	62
BstC8I	GCNNGC	2 cut(s)	198, 253
BstDEI	CTNAG	1 cut(s)	281
BstDSI	CCRYGG	1 cut(s)	115
BstEII	GGTNACC	1 cut(s)	329
BstKTI	GATC	2 cut(s)	173, 295
BstMAI	GTCTC	1 cut(s)	33
BstMBI	GATC	2 cut(s)	170, 292
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNI	CCWGG	2 cut(s)	297, 327
BstPI	GGTNACC	1 cut(s)	329
BstSCI	CCNGG	2 cut(s)	295, 325
BstXI	CCANNNNNNTGG	1 cut(s)	224
BtgI	CCRYGG	1 cut(s)	115
Cac8I	GCNNGC	2 cut(s)	198, 253
CciI	TCATGA	1 cut(s)	31
Csp6I	GTAC	2 cut(s)	184, 262
CviAII	CATG	1 cut(s)	32
CviJI	RGCY	3 cut(s)	56, 120, 251
CviKI_1	RGCY	3 cut(s)	56, 120, 251
CviQI	GTAC	2 cut(s)	184, 262
DdeI	CTNAG	1 cut(s)	281
DpnI	GATC	2 cut(s)	172, 294
DpnII	GATC	2 cut(s)	170, 292
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Eco91I	GGTNACC	1 cut(s)	329
EcoO65I	GGTNACC	1 cut(s)	329
EcoRII	CCWGG	2 cut(s)	295, 325
FaeI	CATG	1 cut(s)	35
FaiI	YATR	2 cut(s)	33, 65
FatI	CATG	1 cut(s)	31
Hin1II	CATG	1 cut(s)	35
HinfI	GANTC	2 cut(s)	136, 302
HphI	GGTGA	2 cut(s)	16, 311
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	3 cut(s)	175, 282, 307
Hpy188III	TCNNGA	1 cut(s)	32
Hpy8I	GTNNAC	1 cut(s)	214
HpyCH4III	ACNGT	2 cut(s)	47, 162
HpyCH4IV	ACGT	1 cut(s)	234
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	1 cut(s)	281
HpySE526I	ACGT	1 cut(s)	234
Hsp92II	CATG	1 cut(s)	35
Kzo9I	GATC	2 cut(s)	170, 292
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	3 cut(s)	282, 309, 312
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	3 cut(s)	4, 89, 329
MalI	GATC	2 cut(s)	172, 294
MboI	GATC	2 cut(s)	170, 292
MboII	GAAGA	3 cut(s)	34, 79, 180
MfeI	CAATTG	1 cut(s)	151
MluCI	AATT	2 cut(s)	151, 321
MnlI	CCTC	2 cut(s)	28, 122
MslI	CAYNNNNRTG	1 cut(s)	222
MspR9I	CCNGG	2 cut(s)	297, 327
MunI	CAATTG	1 cut(s)	151
MvaI	CCWGG	2 cut(s)	297, 327
MwoI	GCNNNNNNNGC	1 cut(s)	197
NdeII	GATC	2 cut(s)	170, 292
NlaIII	CATG	1 cut(s)	35
NlaIV	GGNNCC	1 cut(s)	121
NmuCI	GTSAC	2 cut(s)	4, 329
PagI	TCATGA	1 cut(s)	31
PfeI	GAWTC	2 cut(s)	136, 302
Psp1406I	AACGTT	1 cut(s)	234
Psp6I	CCWGG	2 cut(s)	295, 325
PspEI	GGTNACC	1 cut(s)	329
PspGI	CCWGG	2 cut(s)	295, 325
PspN4I	GGNNCC	1 cut(s)	121
RsaI	GTAC	2 cut(s)	185, 263
RsaNI	GTAC	2 cut(s)	184, 262
RseI	CAYNNNNRTG	1 cut(s)	222
Sau3AI	GATC	2 cut(s)	170, 292
ScaI	AGTACT	2 cut(s)	185, 263
ScrFI	CCNGG	2 cut(s)	297, 327
SetI	ASST	3 cut(s)	53, 237, 253
SmiMI	CAYNNNNRTG	1 cut(s)	222
Sse9I	AATT	2 cut(s)	151, 321
SsiI	CCGC	1 cut(s)	255
StyD4I	CCNGG	2 cut(s)	295, 325
TaaI	ACNGT	2 cut(s)	47, 162
TaiI	ACGT	1 cut(s)	237
TasI	AATT	2 cut(s)	151, 321
TatI	WGTACW	2 cut(s)	183, 261
TfiI	GAWTC	2 cut(s)	136, 302
TseFI	GTSAC	2 cut(s)	4, 329
Tsp45I	GTSAC	2 cut(s)	4, 329
TspDTI	ATGAA	1 cut(s)	80
TspGWI	ACGGA	3 cut(s)	23, 104, 257
XcmI	CCANNNNNNNNNTGG	1 cut(s)	221
ZrmI	AGTACT	2 cut(s)	185, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.