Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005319

Physical Location & Seq

Genomic Coordinates Forward (+)

37993799 .. 37994968

Gene Structure 1170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g38130.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGTGGCGCCGAAGAAGACGAAGAAGACCCATGAGAGCATCAACACCAGGCTCGCTCTCGTCATGAAGAGCGGCAAATACACTCTCGGTTACAAAACCGTCATCGATTCCCTCCGCAGCTCCAAAGGCACCCGATTTCTTCATCGCAAGTTGATCATTATCTCCAACAATTGCCCGCCTCTTCGGAAGTCGGAAATCGAATACTATGCGATGCTTGCGAAGATTGGGGTTCACCATTACAACGGAAACAATGTTGAGCTTGGTACAGCCTGCGGCAAGTATTTCCGCGTTTCGTGCCTTAGCATTATCGATGCAGGTGATTCAGATATCATAAAGACTCTACCTGGTGATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

119

Amino Acids

13.15

Weight (kDa)

9.71

Isoelectric Point (pI)

41.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36240 AT1G77940 AT3G18740
fragaria_vesca	FvH4_5g28040 FvH4_5g38130 FvH4_7g04710
malus_domestica	MD08G1176600.v1.1 MD15G1363000.v1.1 MD15G1431500.v1.1
prunus_persica	Prupe.1G096700_v2.0.a1 Prupe.1G511000_v2.0.a1
pyrus_communis	pycom08g15150 pycom15g32500 pycom15g38130
rosa_chinensis	RchiOBHm_Chr6g0275411 RchiOBHm_Chr7g0240111
rosa_laevigata	RLG00000000705 RLG00000013464
rosa_multiflora	Rmu_sc0005008.1_g000029 Rmu_sc0007358.1_g000013
rosa_roxburghii	Rroxscaffold_3G00220410 Rroxscaffold_7G00193340
rosa_rugosa	Rorug06G0091900 Rorug07G0333300
rosa_samantha	Rh6BG208400 Rh6DG200900 Rh7AG486900
rosa_wichuraiana	Rw6G017820 Rw7G040800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	305
Acc36I	ACCTGC	1 cut(s)	305
AccB1I	GGYRCC	2 cut(s)	7, 128
AccBSI	CCGCTC	1 cut(s)	72
AccII	CGCG	1 cut(s)	288
AciI	CCGC	5 cut(s)	72, 115, 176, 273, 286
AcyI	GRCGYC	1 cut(s)	8
AfaI	GTAC	1 cut(s)	265
AjnI	CCWGG	2 cut(s)	47, 343
AluBI	AGCT	2 cut(s)	120, 259
AluI	AGCT	2 cut(s)	120, 259
ApeKI	GCWGC	1 cut(s)	117
AspLEI	GCGC	1 cut(s)	10
AsuHPI	GGTGA	2 cut(s)	224, 329
BanI	GGYRCC	2 cut(s)	7, 128
BbsI	GAAGAC	2 cut(s)	23, 32
BbvI	GCAGC	1 cut(s)	129
BcgI	CGANNNNNNTGC	2 cut(s)	188, 222
BciT130I	CCWGG	2 cut(s)	49, 345
BclI	TGATCA	2 cut(s)	153, 349
BfoI	RGCGCY	1 cut(s)	11
BfuAI	ACCTGC	1 cut(s)	305
BisI	GCNGC	3 cut(s)	73, 118, 274
BlsI	GCNGC	3 cut(s)	74, 119, 275
Bme1390I	CCNGG	2 cut(s)	49, 345
BmiI	GGNNCC	2 cut(s)	9, 130
BmrFI	CCNGG	2 cut(s)	49, 345
BmsI	GCATC	3 cut(s)	48, 201, 301
BpiI	GAAGAC	2 cut(s)	23, 32
Bpu10I	CCTNAGC	1 cut(s)	299
Bsa29I	ATCGAT	2 cut(s)	105, 309
BsaBI	GATNNNNATC	1 cut(s)	158
BsaHI	GRCGYC	1 cut(s)	8
Bse8I	GATNNNNATC	1 cut(s)	158
BseBI	CCWGG	2 cut(s)	49, 345
BseCI	ATCGAT	2 cut(s)	105, 309
BseJI	GATNNNNATC	1 cut(s)	158
BseXI	GCAGC	1 cut(s)	129
Bsh1236I	CGCG	1 cut(s)	288
BshNI	GGYRCC	2 cut(s)	7, 128
BshVI	ATCGAT	2 cut(s)	105, 309
Bsp143I	GATC	2 cut(s)	153, 349
BspACI	CCGC	5 cut(s)	72, 115, 176, 273, 286
BspDI	ATCGAT	2 cut(s)	105, 309
BspFNI	CGCG	1 cut(s)	288
BspHI	TCATGA	1 cut(s)	63
BspLI	GGNNCC	2 cut(s)	9, 130
BspMI	ACCTGC	1 cut(s)	305
BspQI	GCTCTTC	1 cut(s)	62
BspT107I	GGYRCC	2 cut(s)	7, 128
BsrBI	CCGCTC	1 cut(s)	72
BssMI	GATC	2 cut(s)	153, 349
BssNI	GRCGYC	1 cut(s)	8
Bst2UI	CCWGG	2 cut(s)	49, 345
Bst4CI	ACNGT	1 cut(s)	100
Bst6I	CTCTTC	2 cut(s)	62, 186
BstACI	GRCGYC	1 cut(s)	8
BstC8I	GCNNGC	4 cut(s)	54, 176, 216, 271
BstDEI	CTNAG	1 cut(s)	299
BstFNI	CGCG	1 cut(s)	288
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	2 cut(s)	156, 352
BstMBI	GATC	2 cut(s)	153, 349
BstMWI	GCNNNNNNNGC	3 cut(s)	126, 215, 294
BstNI	CCWGG	2 cut(s)	49, 345
BstSCI	CCNGG	2 cut(s)	47, 343
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	1 cut(s)	129
BstV2I	GAAGAC	2 cut(s)	23, 32
Bsu15I	ATCGAT	2 cut(s)	105, 309
BsuTUI	ATCGAT	2 cut(s)	105, 309
BtgZI	GCGATG	2 cut(s)	128, 224
BveI	ACCTGC	1 cut(s)	305
Cac8I	GCNNGC	4 cut(s)	54, 176, 216, 271
CciI	TCATGA	1 cut(s)	63
CfoI	GCGC	1 cut(s)	10
ClaI	ATCGAT	2 cut(s)	105, 309
CsiI	ACCWGGT	1 cut(s)	343
Csp6I	GTAC	1 cut(s)	264
CviAII	CATG	2 cut(s)	32, 64
CviJI	RGCY	4 cut(s)	52, 120, 259, 269
CviKI_1	RGCY	4 cut(s)	52, 120, 259, 269
CviQI	GTAC	1 cut(s)	264
DdeI	CTNAG	1 cut(s)	299
DinI	GGCGCC	1 cut(s)	9
DpnI	GATC	2 cut(s)	155, 351
DpnII	GATC	2 cut(s)	153, 349
Eam1104I	CTCTTC	2 cut(s)	62, 186
EarI	CTCTTC	2 cut(s)	62, 186
Eco32I	GATATC	1 cut(s)	328
EcoRII	CCWGG	2 cut(s)	47, 343
EcoRV	GATATC	1 cut(s)	328
EgeI	GGCGCC	1 cut(s)	9
EheI	GGCGCC	1 cut(s)	9
FaeI	CATG	2 cut(s)	35, 67
FaiI	YATR	4 cut(s)	33, 65, 207, 332
FatI	CATG	2 cut(s)	31, 63
FauI	CCCGC	1 cut(s)	183
FbaI	TGATCA	2 cut(s)	153, 349
Fnu4HI	GCNGC	3 cut(s)	73, 118, 274
Fsp4HI	GCNGC	3 cut(s)	73, 118, 274
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	3 cut(s)	73, 118, 274
HaeII	RGCGCY	1 cut(s)	11
HhaI	GCGC	1 cut(s)	10
Hin1I	GRCGYC	1 cut(s)	8
Hin1II	CATG	2 cut(s)	35, 67
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HinfI	GANTC	3 cut(s)	107, 320, 337
HphI	GGTGA	2 cut(s)	224, 329
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	3 cut(s)	186, 193, 325
Hpy188III	TCNNGA	1 cut(s)	64
Hpy8I	GTNNAC	1 cut(s)	232
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4V	TGCA	1 cut(s)	314
HpyF10VI	GCNNNNNNNGC	3 cut(s)	126, 215, 294
HpyF3I	CTNAG	1 cut(s)	299
Hsp92I	GRCGYC	1 cut(s)	8
Hsp92II	CATG	2 cut(s)	35, 67
HspAI	GCGC	1 cut(s)	8
KasI	GGCGCC	1 cut(s)	7
Ksp22I	TGATCA	2 cut(s)	153, 349
Kzo9I	GATC	2 cut(s)	153, 349
LguI	GCTCTTC	1 cut(s)	62
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	5 cut(s)	34, 61, 283, 300, 330
Lsp1109I	GCAGC	1 cut(s)	129
LweI	GCATC	3 cut(s)	48, 201, 301
MabI	ACCWGGT	1 cut(s)	343
MaeIII	GTNAC	1 cut(s)	89
MalI	GATC	2 cut(s)	155, 351
MbiI	CCGCTC	1 cut(s)	72
MboI	GATC	2 cut(s)	153, 349
MboII	GAAGA	8 cut(s)	25, 28, 34, 37, 79, 131, 173, 232
MfeI	CAATTG	1 cut(s)	169
MluCI	AATT	1 cut(s)	169
Mly113I	GGCGCC	1 cut(s)	8
MlyI	GAGTC	1 cut(s)	331
MmeI	TCCRAC	2 cut(s)	171, 189
MnlI	CCTC	2 cut(s)	122, 189
MspR9I	CCNGG	2 cut(s)	49, 345
MunI	CAATTG	1 cut(s)	169
MvaI	CCWGG	2 cut(s)	49, 345
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	3 cut(s)	126, 215, 294
NarI	GGCGCC	1 cut(s)	8
NdeII	GATC	2 cut(s)	153, 349
NlaIII	CATG	2 cut(s)	35, 67
NlaIV	GGNNCC	2 cut(s)	9, 130
PagI	TCATGA	1 cut(s)	63
PaqCI	CACCTGC	1 cut(s)	305
PciSI	GCTCTTC	1 cut(s)	62
PfeI	GAWTC	2 cut(s)	107, 320
PkrI	GCNGC	3 cut(s)	74, 119, 275
PleI	GAGTC	1 cut(s)	331
PluTI	GGCGCC	1 cut(s)	11
PpsI	GAGTC	1 cut(s)	331
Psp6I	CCWGG	2 cut(s)	47, 343
PspGI	CCWGG	2 cut(s)	47, 343
PspN4I	GGNNCC	2 cut(s)	9, 130
RsaI	GTAC	1 cut(s)	265
RsaNI	GTAC	1 cut(s)	264
SapI	GCTCTTC	1 cut(s)	62
SatI	GCNGC	3 cut(s)	73, 118, 274
Sau3AI	GATC	2 cut(s)	153, 349
SchI	GAGTC	1 cut(s)	331
ScrFI	CCNGG	2 cut(s)	49, 345
SetI	ASST	4 cut(s)	122, 261, 319, 346
SexAI	ACCWGGT	1 cut(s)	343
SfaNI	GCATC	3 cut(s)	48, 201, 301
SfoI	GGCGCC	1 cut(s)	9
Sse9I	AATT	1 cut(s)	169
SsiI	CCGC	5 cut(s)	72, 115, 176, 273, 286
SspDI	GGCGCC	1 cut(s)	7
StyD4I	CCNGG	2 cut(s)	47, 343
TaaI	ACNGT	1 cut(s)	100
TaqI	TCGA	3 cut(s)	105, 198, 309
TasI	AATT	1 cut(s)	169
TauI	GCSGC	2 cut(s)	75, 276
TfiI	GAWTC	2 cut(s)	107, 320
TseI	GCWGC	1 cut(s)	117
TspDTI	ATGAA	2 cut(s)	80, 131
TspGWI	ACGGA	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.