AT1G40390

Ribonuclease H protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
15432576 .. 15434674
2099 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G40390.1

Sequence Viewer

Length: 1281 bp
ATGTTATCAGCGGTGCCTAAACAGAAATGGATTCCCAAATCAGACGTGAAGGCACCCATAACAGTAACTTCTTCTTCTCTTACTGTTGTTCAAGCTGGTCTTAGCCCTCTTTCTGAGATCCCTAAGGTGGCGCCTTCTATTTCAAAGGTCTCCGATGGAGGTCCAACTAGTCTGTGTGTCGAAGACATTCGGTCCACAAGGGATCAGCTAGTTGATCCTCCTTTTCCTCCTCCTCCTGGTTGGGGTGCGATGTCCAATAAGGAGAAGAAGAAGCAATTAAAAATGAATACTGAGGCTGAGAGAAGGTCTCTTTGGGATGATATTACAAGGTTGTCTGCTTCCTCTCCTCTTTGTAATTCTCCATGGCTTGTTGTTGGAGACTTTAACCAAATTGCTTCTGTCACAGAGCATTACTCTCTCATGCCGTCTAATATTTCCTTACAAGGCTTGGAGGACCTGCAAGCTTGTATGAGAGACAGTGACCTTGTGGATCTACCGTGTAGGGGTGTGCTGTACACTTGGTCTAATCACCAGCAAGATAATCCAATTCTAAGGAAGCTTGATAGAGCCATTGTTAATGGTTGTTGGCTTGCTACCTTCCCAACGGCGTCTGCTATCTTTGACCCTCCTAGCGACTCTGACCACGCAGCGTGTATGGTCATTCTCAATAACTCTCCGCCTCTTTCAAAAAAGAAAAGTTTCAAGTACTTTTCTTTCTTATCGACGCATCCGGATTTTATCTCTTCTATTTTGGCTGCGTGGCAGAAGGAGATAGCTGTGGGTTCTTTCATGTTTTCCTTAGGAGAACTCTTAAAAGAGGCTAAGAAGGCCTGTAGAGGTCTGAATAGACGTGGCTTCAGTAATATTCAAGCTCAATTGATGTCCAATCCGTCTGACTTCTTATTCAGGGCTGAACATGTTGCCCGCAAAAATTGGAATTTCTTCGCTGCTGCTCTGGAATCCTTTTACAAACAGAAGTCCAGAATCAAATGGTTAAAGGAAGGTGATTTGGAGCTGTTGACGAGCTATCTGGAAGAAGCGGACCTGATCATGTCAAAGCACTCGACCCCGAGGTCGACTAGGAGCTTCAAGATCTCAAGAGACCACTCGACCCCCAGGTCGAGTAGAAGAAATCACCACTTCACCTCACCACTCGACCACGAGGTCGAGTGTCCTCATCTCCATCACCTGACCATCACTCGATCAAACCACTCGACCCCGTGGTCGAGTGTCTTCACCTTCATTGCCAGACCACTACTCGATCTCACCACTCTACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

426

Amino Acids

47.77

Weight (kDa)

9.01

Isoelectric Point (pI)

58.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 4 cut(s) 1072, 1117, 1163, 1222
Acc36I ACCTGC 1 cut(s) 465
AccB1I GGYRCC 3 cut(s) 13, 52, 130
AccI GTMKAC 1 cut(s) 1076
AccIII TCCGGA 1 cut(s) 730
AciI CCGC 4 cut(s) 11, 677, 925, 1040
AclWI GGATC 4 cut(s) 112, 209, 210, 498
AcsI RAATTY 1 cut(s) 937
AcuI CTGAAG 1 cut(s) 841
AcyI GRCGYC 2 cut(s) 131, 608
AfaI GTAC 2 cut(s) 515, 707
AfiI CCNNNNNNNGG 4 cut(s) 127, 236, 242, 503
AflIII ACRYGT 1 cut(s) 916
AgsI TTSAA 6 cut(s) 92, 144, 687, 703, 869, 1090
AhdI GACNNNNNGTC 1 cut(s) 190
AhlI ACTAGT 1 cut(s) 167
AjiI CACGTC 2 cut(s) 46, 851
AjnI CCWGG 2 cut(s) 235, 1115
AjuI GAANNNNNNNTTGG 2 cut(s) 295, 327
AluBI AGCT 9 cut(s) 95, 208, 464, 559, 776, 872, 1015, 1026, 1086
AluI AGCT 9 cut(s) 95, 208, 464, 559, 776, 872, 1015, 1026, 1086
Alw26I GTCTC 5 cut(s) 154, 312, 372, 468, 1095
AlwI GGATC 4 cut(s) 112, 209, 210, 498
Ama87I CYCGRG 1 cut(s) 1069
Aor13HI TCCGGA 1 cut(s) 730
AoxI GGCC 1 cut(s) 828
ApeKI GCWGC 4 cut(s) 647, 755, 947, 950
ApoI RAATTY 1 cut(s) 937
Asp700I GAANNNNTTC 3 cut(s) 186, 698, 941
AspLEI GCGC 1 cut(s) 133
AspS9I GGNCC 4 cut(s) 161, 192, 454, 1042
AsuHPI GGTGA 8 cut(s) 521, 1016, 1127, 1135, 1140, 1178, 1228, 1258
AvaI CYCGRG 1 cut(s) 1069
AvaII GGWCC 4 cut(s) 161, 192, 454, 1042
AxyI CCTNAGG 2 cut(s) 123, 799
BanI GGYRCC 3 cut(s) 13, 52, 130
BauI CACGAG 1 cut(s) 1160
BbsI GAAGAC 2 cut(s) 189, 1225
BbvI GCAGC 4 cut(s) 659, 742, 934, 937
BccI CCATC 3 cut(s) 149, 1191, 1202
BceAI ACGGC 2 cut(s) 409, 621
BciT130I CCWGG 2 cut(s) 237, 1117
BclI TGATCA 1 cut(s) 1047
BcoDI GTCTC 5 cut(s) 154, 312, 372, 468, 1095
BcuI ACTAGT 1 cut(s) 167
BfaI CTAG 4 cut(s) 168, 209, 630, 1080
BfmI CTRYAG 1 cut(s) 832
BfoI RGCGCY 1 cut(s) 134
BfuAI ACCTGC 1 cut(s) 465
BglII AGATCT 1 cut(s) 1092
BisI GCNGC 4 cut(s) 648, 756, 948, 951
BlsI GCNGC 4 cut(s) 649, 757, 949, 952
BmcAI AGTACT 1 cut(s) 707
Bme1390I CCNGG 2 cut(s) 237, 1117
Bme18I GGWCC 4 cut(s) 161, 192, 454, 1042
BmeRI GACNNNNNGTC 1 cut(s) 190
BmeT110I CYCGRG 1 cut(s) 1069
BmgBI CACGTC 2 cut(s) 46, 851
BmgT120I GGNCC 4 cut(s) 161, 192, 454, 1042
BmiI GGNNCC 3 cut(s) 15, 54, 132
BmrFI CCNGG 2 cut(s) 237, 1117
BmsI GCATC 1 cut(s) 736
BpiI GAAGAC 2 cut(s) 189, 1225
BplI GAGNNNNNCTC 4 cut(s) 292, 324, 398, 430
BpuEI CTTGAG 1 cut(s) 1081
BsaHI GRCGYC 2 cut(s) 131, 608
BsaI GGTCTC 3 cut(s) 154, 312, 1095
BsaJI CCNNGG 4 cut(s) 362, 1070, 1115, 1220
BsaWI WCCGGW 1 cut(s) 730
Bsc4I CCNNNNNNNGG 4 cut(s) 127, 236, 242, 503
Bse21I CCTNAGG 2 cut(s) 123, 799
Bse3DI GCAATG 1 cut(s) 1242
BseAI TCCGGA 1 cut(s) 730
BseBI CCWGG 2 cut(s) 237, 1117
BseDI CCNNGG 4 cut(s) 362, 1070, 1115, 1220
BseGI GGATG 2 cut(s) 322, 727
BseLI CCNNNNNNNGG 4 cut(s) 127, 236, 242, 503
BseMI GCAATG 1 cut(s) 1242
BseMII CTCAG 3 cut(s) 105, 282, 288
BseRI GAGGAG 3 cut(s) 219, 222, 336
BseXI GCAGC 4 cut(s) 659, 742, 934, 937
BshFI GGCC 1 cut(s) 830
BshNI GGYRCC 3 cut(s) 13, 52, 130
BsiHKCI CYCGRG 1 cut(s) 1069
BsiSI CCGG 1 cut(s) 731
BslI CCNNNNNNNGG 4 cut(s) 127, 236, 242, 503
BsmAI GTCTC 5 cut(s) 154, 312, 372, 468, 1095
BsnI GGCC 1 cut(s) 830
Bso31I GGTCTC 3 cut(s) 154, 312, 1095
BsoBI CYCGRG 1 cut(s) 1069
Bsp13I TCCGGA 1 cut(s) 730
Bsp1407I TGTACA 1 cut(s) 513
Bsp143I GATC 8 cut(s) 117, 202, 214, 490, 1047, 1092, 1202, 1261
Bsp19I CCATGG 1 cut(s) 362
BspACI CCGC 4 cut(s) 11, 677, 925, 1040
BspANI GGCC 1 cut(s) 830
BspCNI CTCAG 3 cut(s) 106, 283, 289
BspEI TCCGGA 1 cut(s) 730
BspLI GGNNCC 3 cut(s) 15, 54, 132
BspMI ACCTGC 1 cut(s) 465
BspPI GGATC 4 cut(s) 112, 209, 210, 498
BspT107I GGYRCC 3 cut(s) 13, 52, 130
BspTNI GGTCTC 3 cut(s) 154, 312, 1095
BsrDI GCAATG 1 cut(s) 1242
BsrGI TGTACA 1 cut(s) 513
BssECI CCNNGG 4 cut(s) 362, 1070, 1115, 1220
BssMI GATC 8 cut(s) 117, 202, 214, 490, 1047, 1092, 1202, 1261
BssNI GRCGYC 2 cut(s) 131, 608
BssSI CACGAG 1 cut(s) 1160
BssT1I CCWWGG 1 cut(s) 362
Bst2BI CACGAG 1 cut(s) 1160
Bst2UI CCWGG 2 cut(s) 237, 1117
Bst4CI ACNGT 4 cut(s) 64, 85, 479, 498
Bst6I CTCTTC 1 cut(s) 748
BstACI GRCGYC 2 cut(s) 131, 608
BstAUI TGTACA 1 cut(s) 513
BstC8I GCNNGC 3 cut(s) 462, 591, 925
BstDEI CTNAG 8 cut(s) 101, 114, 123, 291, 297, 551, 799, 822
BstDSI CCRYGG 2 cut(s) 362, 1220
BstF5I GGATG 2 cut(s) 322, 727
BstH2I RGCGCY 1 cut(s) 134
BstHHI GCGC 1 cut(s) 133
BstKTI GATC 8 cut(s) 120, 205, 217, 493, 1050, 1095, 1205, 1264
BstMAI GTCTC 5 cut(s) 154, 312, 372, 468, 1095
BstMBI GATC 8 cut(s) 117, 202, 214, 490, 1047, 1092, 1202, 1261
BstMWI GCNNNNNNNGC 1 cut(s) 827
BstNI CCWGG 2 cut(s) 237, 1117
BstNSI RCATGY 1 cut(s) 920
BstSCI CCNGG 2 cut(s) 235, 1115
BstSFI CTRYAG 1 cut(s) 832
BstV1I GCAGC 4 cut(s) 659, 742, 934, 937
BstV2I GAAGAC 2 cut(s) 189, 1225
BstX2I RGATCY 3 cut(s) 117, 490, 1092
BstYI RGATCY 3 cut(s) 117, 490, 1092
Bsu36I CCTNAGG 2 cut(s) 123, 799
BsuRI GGCC 1 cut(s) 830
BtgI CCRYGG 2 cut(s) 362, 1220
BtgZI GCGATG 1 cut(s) 263
BtrI CACGTC 2 cut(s) 46, 851
BtsCI GGATG 2 cut(s) 322, 727
BtsIMutI CAGTG 1 cut(s) 484
BveI ACCTGC 1 cut(s) 465
Cac8I GCNNGC 3 cut(s) 462, 591, 925
CfoI GCGC 1 cut(s) 133
Cfr13I GGNCC 4 cut(s) 161, 192, 454, 1042
CseI GACGC 2 cut(s) 597, 733
Csp6I GTAC 2 cut(s) 514, 706
CviAII CATG 5 cut(s) 363, 421, 790, 917, 1051
CviQI GTAC 2 cut(s) 514, 706
DdeI CTNAG 8 cut(s) 101, 114, 123, 291, 297, 551, 799, 822
DinI GGCGCC 1 cut(s) 132
DpnI GATC 8 cut(s) 119, 204, 216, 492, 1049, 1094, 1204, 1263
DpnII GATC 8 cut(s) 117, 202, 214, 490, 1047, 1092, 1202, 1261
DrdI GACNNNNNNGTC 4 cut(s) 1072, 1117, 1163, 1222
DriI GACNNNNNGTC 1 cut(s) 190
DseDI GACNNNNNNGTC 4 cut(s) 1072, 1117, 1163, 1222
Eam1104I CTCTTC 1 cut(s) 748
Eam1105I GACNNNNNGTC 1 cut(s) 190
EarI CTCTTC 1 cut(s) 748
EciI GGCGGA 1 cut(s) 666
Eco130I CCWWGG 1 cut(s) 362
Eco147I AGGCCT 1 cut(s) 830
Eco31I GGTCTC 3 cut(s) 154, 312, 1095
Eco47I GGWCC 4 cut(s) 161, 192, 454, 1042
Eco57I CTGAAG 1 cut(s) 841
Eco81I CCTNAGG 2 cut(s) 123, 799
Eco88I CYCGRG 1 cut(s) 1069
EcoO109I RGGNCCY 1 cut(s) 454
EcoRII CCWGG 2 cut(s) 235, 1115
EcoT14I CCWWGG 1 cut(s) 362
EgeI GGCGCC 1 cut(s) 132
EheI GGCGCC 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 362
FaeI CATG 5 cut(s) 366, 424, 793, 920, 1054
FaiI YATR 8 cut(s) 59, 364, 422, 470, 656, 791, 918, 1052
FalI AAGNNNNNCTT 2 cut(s) 84, 116
FatI CATG 5 cut(s) 362, 420, 789, 916, 1050
FauI CCCGC 1 cut(s) 932
FbaI TGATCA 1 cut(s) 1047
FblI GTMKAC 1 cut(s) 1076
Fnu4HI GCNGC 4 cut(s) 648, 756, 948, 951
FokI GGATG 2 cut(s) 329, 714
Fsp4HI GCNGC 4 cut(s) 648, 756, 948, 951
FspBI CTAG 4 cut(s) 168, 209, 630, 1080
GlaI GCGC 1 cut(s) 132
GluI GCNGC 4 cut(s) 648, 756, 948, 951
HaeII RGCGCY 1 cut(s) 134
HaeIII GGCC 1 cut(s) 830
HapII CCGG 1 cut(s) 731
HgaI GACGC 2 cut(s) 597, 733
HhaI GCGC 1 cut(s) 133
Hin1I GRCGYC 2 cut(s) 131, 608
Hin1II CATG 5 cut(s) 366, 424, 793, 920, 1054
Hin6I GCGC 1 cut(s) 131
HinP1I GCGC 1 cut(s) 131
HincII GTYRAC 2 cut(s) 1020, 1077
HindII GTYRAC 2 cut(s) 1020, 1077
HindIII AAGCTT 2 cut(s) 462, 557
HinfI GANTC 4 cut(s) 31, 635, 959, 984
HpaII CCGG 1 cut(s) 731
HphI GGTGA 8 cut(s) 521, 1016, 1127, 1135, 1140, 1178, 1228, 1258
Hpy166II GTNNAC 4 cut(s) 195, 516, 1020, 1077
Hpy188I TCNGA 6 cut(s) 43, 115, 154, 640, 843, 895
Hpy188III TCNNGA 6 cut(s) 731, 956, 981, 1031, 1090, 1098
Hpy8I GTNNAC 4 cut(s) 195, 516, 1020, 1077
Hpy99I CGWCG 1 cut(s) 727
HpyAV CCTTC 8 cut(s) 43, 144, 297, 607, 760, 820, 995, 1249
HpyCH4III ACNGT 4 cut(s) 64, 85, 479, 498
HpyCH4IV ACGT 2 cut(s) 45, 850
HpyCH4V TGCA 1 cut(s) 460
HpyF10VI GCNNNNNNNGC 1 cut(s) 827
HpyF3I CTNAG 8 cut(s) 101, 114, 123, 291, 297, 551, 799, 822
HpySE526I ACGT 2 cut(s) 45, 850
Hsp92I GRCGYC 2 cut(s) 131, 608
Hsp92II CATG 5 cut(s) 366, 424, 793, 920, 1054
HspAI GCGC 1 cut(s) 131
KasI GGCGCC 1 cut(s) 130
Kpn2I TCCGGA 1 cut(s) 730
Ksp22I TGATCA 1 cut(s) 1047
Kzo9I GATC 8 cut(s) 117, 202, 214, 490, 1047, 1092, 1202, 1261
LmnI GCTCC 2 cut(s) 1012, 1083
Lsp1109I GCAGC 4 cut(s) 659, 742, 934, 937
LweI GCATC 1 cut(s) 736
MaeI CTAG 4 cut(s) 168, 209, 630, 1080
MaeII ACGT 2 cut(s) 45, 850
MaeIII GTNAC 3 cut(s) 64, 400, 479
MalI GATC 8 cut(s) 119, 204, 216, 492, 1049, 1094, 1204, 1263
MboI GATC 8 cut(s) 117, 202, 214, 490, 1047, 1092, 1202, 1261
MfeI CAATTG 1 cut(s) 875
MflI RGATCY 3 cut(s) 117, 490, 1092
MluCI AATT 7 cut(s) 275, 355, 390, 546, 875, 931, 937
Mly113I GGCGCC 1 cut(s) 131
MlyI GAGTC 1 cut(s) 629
MmeI TCCRAC 2 cut(s) 188, 355
MroI TCCGGA 1 cut(s) 730
MroXI GAANNNNTTC 3 cut(s) 186, 698, 941
MseI TTAA 5 cut(s) 278, 384, 576, 812, 995
MspA1I CMGCKG 1 cut(s) 11
MspI CCGG 1 cut(s) 731
MspR9I CCNGG 2 cut(s) 237, 1117
MunI CAATTG 1 cut(s) 875
MvaI CCWGG 2 cut(s) 237, 1117
MwoI GCNNNNNNNGC 1 cut(s) 827
NarI GGCGCC 1 cut(s) 131
NcoI CCATGG 1 cut(s) 362
NdeII GATC 8 cut(s) 117, 202, 214, 490, 1047, 1092, 1202, 1261
NlaIII CATG 5 cut(s) 366, 424, 793, 920, 1054
NlaIV GGNNCC 3 cut(s) 15, 54, 132
NmuCI GTSAC 2 cut(s) 400, 479
NspI RCATGY 1 cut(s) 920
PceI AGGCCT 1 cut(s) 830
PciI ACATGT 1 cut(s) 916
PdmI GAANNNNTTC 3 cut(s) 186, 698, 941
PfeI GAWTC 3 cut(s) 31, 959, 984
PkrI GCNGC 4 cut(s) 649, 757, 949, 952
PleI GAGTC 1 cut(s) 629
PluTI GGCGCC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 629
PpuMI RGGWCCY 1 cut(s) 454
PscI ACATGT 1 cut(s) 916
Psp5II RGGWCCY 1 cut(s) 454
Psp6I CCWGG 2 cut(s) 235, 1115
PspGI CCWGG 2 cut(s) 235, 1115
PspN4I GGNNCC 3 cut(s) 15, 54, 132
PspPI GGNCC 4 cut(s) 161, 192, 454, 1042
PspPPI RGGWCCY 1 cut(s) 454
PsuI RGATCY 3 cut(s) 117, 490, 1092
RsaI GTAC 2 cut(s) 515, 707
RsaNI GTAC 2 cut(s) 514, 706
SalI GTCGAC 1 cut(s) 1075
SaqAI TTAA 5 cut(s) 278, 384, 576, 812, 995
SatI GCNGC 4 cut(s) 648, 756, 948, 951
Sau3AI GATC 8 cut(s) 117, 202, 214, 490, 1047, 1092, 1202, 1261
Sau96I GGNCC 4 cut(s) 161, 192, 454, 1042
ScaI AGTACT 1 cut(s) 707
SchI GAGTC 1 cut(s) 629
ScrFI CCNGG 2 cut(s) 237, 1117
SfaNI GCATC 1 cut(s) 736
SfcI CTRYAG 1 cut(s) 832
SfoI GGCGCC 1 cut(s) 132
SinI GGWCC 4 cut(s) 161, 192, 454, 1042
SmlI CTYRAG 1 cut(s) 1096
SmoI CTYRAG 1 cut(s) 1096
SpeI ACTAGT 1 cut(s) 167
Sse9I AATT 7 cut(s) 275, 355, 390, 546, 875, 931, 937
SseBI AGGCCT 1 cut(s) 830
SsiI CCGC 4 cut(s) 11, 677, 925, 1040
SspDI GGCGCC 1 cut(s) 130
SspI AATATT 2 cut(s) 433, 865
SspMI CTAG 4 cut(s) 168, 209, 630, 1080
StuI AGGCCT 1 cut(s) 830
StyD4I CCNGG 2 cut(s) 235, 1115
StyI CCWWGG 1 cut(s) 362
TaaI ACNGT 4 cut(s) 64, 85, 479, 498
TaiI ACGT 2 cut(s) 48, 853
TaqII GACCGA 1 cut(s) 180
TasI AATT 7 cut(s) 275, 355, 390, 546, 875, 931, 937
TatI WGTACW 2 cut(s) 513, 705
TfiI GAWTC 3 cut(s) 31, 959, 984
Tru1I TTAA 5 cut(s) 278, 384, 576, 812, 995
Tru9I TTAA 5 cut(s) 278, 384, 576, 812, 995
TscAI CASTG 1 cut(s) 484
TseFI GTSAC 2 cut(s) 400, 479
TseI GCWGC 4 cut(s) 647, 755, 947, 950
Tsp45I GTSAC 2 cut(s) 400, 479
TspDTI ATGAA 3 cut(s) 299, 778, 1231
TspGWI ACGGA 1 cut(s) 879
TspRI CASTG 1 cut(s) 484
VpaK11BI GGWCC 4 cut(s) 161, 192, 454, 1042
XapI RAATTY 1 cut(s) 937
XceI RCATGY 1 cut(s) 920
XmiI GTMKAC 1 cut(s) 1076
XmnI GAANNNNTTC 3 cut(s) 186, 698, 941
XspI CTAG 4 cut(s) 168, 209, 630, 1080
ZrmI AGTACT 1 cut(s) 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.