ribonuclease H protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G40390 AT1G43760 |
| fragaria_vesca | FvH4_2g05581 FvH4_3g29012 |
| rosa_laevigata | RLG00000017307 |
| rosa_multiflora | Rmu_sc0000447.1_g000013 Rmu_sc0000647.1_g000017 Rmu_sc0001616.1_g000010 Rmu_sc0004932.1_g000002 Rmu_sc0032291.1_g000001 Rmu_sc0035385.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00031810 |
| rosa_samantha | Rh3BG325500 Rh3BG325600 Rh3BG372000 Rh3BG372200 Rh4CG249400 Rh5CG378300 Rh6BG242500 Rh6CG069600 Rh6DG066600 Rh7CG451600 Rh7CG469200 Rh7DG357300 |
| rosa_wichuraiana | Rw4G014200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 302 |
| Acc36I | ACCTGC | 2 cut(s) | 562, 1907 |
| AccB1I | GGYRCC | 1 cut(s) | 2859 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2682 |
| AccII | CGCG | 2 cut(s) | 115, 3483 |
| AciI | CCGC | 4 cut(s) | 727, 883, 1936, 3559 |
| AclWI | GGATC | 5 cut(s) | 826, 959, 1868, 3228, 3577 |
| AcsI | RAATTY | 8 cut(s) | 234, 704, 1315, 1469, 1504, 2068, 2125, 3231 |
| AcuI | CTGAAG | 3 cut(s) | 284, 1056, 2610 |
| AfaI | GTAC | 4 cut(s) | 655, 1759, 2450, 2833 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 613, 813, 974, 1495, 2682, 3096 |
| AflIII | ACRYGT | 1 cut(s) | 113 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1960 |
| AjnI | CCWGG | 2 cut(s) | 670, 1675 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2583, 2615 |
| Alw21I | GWGCWC | 3 cut(s) | 736, 1027, 2394 |
| Alw26I | GTCTC | 8 cut(s) | 38, 793, 1490, 1686, 1968, 2463, 3278, 3619 |
| AlwI | GGATC | 5 cut(s) | 826, 959, 1868, 3228, 3577 |
| Ama87I | CYCGRG | 1 cut(s) | 1882 |
| AoxI | GGCC | 5 cut(s) | 1390, 1652, 2176, 2969, 3119 |
| ApaI | GGGCCC | 1 cut(s) | 1394 |
| ApoI | RAATTY | 8 cut(s) | 234, 704, 1315, 1469, 1504, 2068, 2125, 3231 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 3049, 3081, 3325, 3357 |
| AseI | ATTAAT | 3 cut(s) | 6, 177, 1155 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 494, 1719, 2244, 3235 |
| AspLEI | GCGC | 3 cut(s) | 1683, 2152, 3483 |
| AspS9I | GGNCC | 7 cut(s) | 604, 862, 1390, 1391, 1652, 2685, 2870 |
| AsuC2I | CCSGG | 1 cut(s) | 1389 |
| AsuHPI | GGTGA | 7 cut(s) | 77, 434, 1454, 1919, 2129, 2707, 2834 |
| AsuII | TTCGAA | 3 cut(s) | 335, 2251, 3068 |
| AsuNHI | GCTAGC | 1 cut(s) | 1928 |
| AvaI | CYCGRG | 1 cut(s) | 1882 |
| AvaII | GGWCC | 4 cut(s) | 604, 862, 2685, 2870 |
| BaeGI | GKGCMC | 1 cut(s) | 1394 |
| BanI | GGYRCC | 1 cut(s) | 2859 |
| BanII | GRGCYC | 2 cut(s) | 736, 1394 |
| BbsI | GAAGAC | 1 cut(s) | 500 |
| Bbv12I | GWGCWC | 3 cut(s) | 736, 1027, 2394 |
| BceAI | ACGGC | 1 cut(s) | 2732 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 296, 330 |
| BciT130I | CCWGG | 2 cut(s) | 672, 1677 |
| BclI | TGATCA | 1 cut(s) | 2059 |
| BcnI | CCSGG | 1 cut(s) | 1389 |
| BcoDI | GTCTC | 8 cut(s) | 38, 793, 1490, 1686, 1968, 2463, 3278, 3619 |
| BfmI | CTRYAG | 2 cut(s) | 394, 3462 |
| BfuAI | ACCTGC | 2 cut(s) | 562, 1907 |
| BglII | AGATCT | 1 cut(s) | 149 |
| BmcAI | AGTACT | 1 cut(s) | 655 |
| Bme1390I | CCNGG | 3 cut(s) | 672, 1389, 1677 |
| Bme18I | GGWCC | 4 cut(s) | 604, 862, 2685, 2870 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1960 |
| BmeT110I | CYCGRG | 1 cut(s) | 1882 |
| BmgT120I | GGNCC | 7 cut(s) | 604, 862, 1390, 1391, 1652, 2685, 2870 |
| BmiI | GGNNCC | 4 cut(s) | 1386, 1392, 2671, 2861 |
| BmrFI | CCNGG | 3 cut(s) | 672, 1389, 1677 |
| BmrI | ACTGGG | 1 cut(s) | 2461 |
| BmsI | GCATC | 6 cut(s) | 61, 91, 244, 949, 2137, 2448 |
| BmtI | GCTAGC | 1 cut(s) | 1932 |
| BmuI | ACTGGG | 1 cut(s) | 2461 |
| BpiI | GAAGAC | 1 cut(s) | 500 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 485, 517, 3352, 3384 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2536 |
| Bpu14I | TTCGAA | 3 cut(s) | 335, 2251, 3068 |
| BpuEI | CTTGAG | 3 cut(s) | 1061, 1695, 2471 |
| BpuMI | CCSGG | 1 cut(s) | 1389 |
| BsaBI | GATNNNNATC | 2 cut(s) | 963, 2890 |
| BsaI | GGTCTC | 2 cut(s) | 38, 1490 |
| BsaJI | CCNNGG | 8 cut(s) | 407, 612, 670, 1231, 1676, 2931, 3131, 3395 |
| BsaWI | WCCGGW | 3 cut(s) | 1481, 2040, 3495 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 613, 813, 974, 1495, 2682, 3096 |
| Bse1I | ACTGG | 5 cut(s) | 255, 1747, 1917, 2456, 3416 |
| Bse3DI | GCAATG | 4 cut(s) | 904, 1076, 2901, 3452 |
| Bse8I | GATNNNNATC | 2 cut(s) | 963, 2890 |
| BseBI | CCWGG | 2 cut(s) | 672, 1677 |
| BseDI | CCNNGG | 8 cut(s) | 407, 612, 670, 1231, 1676, 2931, 3131, 3395 |
| BseGI | GGATG | 8 cut(s) | 193, 259, 636, 964, 1747, 2230, 2439, 2740 |
| BseJI | GATNNNNATC | 2 cut(s) | 963, 2890 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 613, 813, 974, 1495, 2682, 3096 |
| BseMI | GCAATG | 4 cut(s) | 904, 1076, 2901, 3452 |
| BseMII | CTCAG | 4 cut(s) | 510, 2247, 2550, 3024 |
| BseNI | ACTGG | 5 cut(s) | 255, 1747, 1917, 2456, 3416 |
| BseRI | GAGGAG | 4 cut(s) | 866, 1478, 2727, 3231 |
| BseSI | GKGCMC | 1 cut(s) | 1394 |
| Bsh1236I | CGCG | 2 cut(s) | 115, 3483 |
| BshFI | GGCC | 5 cut(s) | 1392, 1654, 2178, 2971, 3121 |
| BshNI | GGYRCC | 1 cut(s) | 2859 |
| BsiHKAI | GWGCWC | 3 cut(s) | 736, 1027, 2394 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1882 |
| BsiSI | CCGG | 4 cut(s) | 1388, 1482, 2041, 3496 |
| BslFI | GGGAC | 1 cut(s) | 2287 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 613, 813, 974, 1495, 2682, 3096 |
| BsmAI | GTCTC | 8 cut(s) | 38, 793, 1490, 1686, 1968, 2463, 3278, 3619 |
| BsmFI | GGGAC | 1 cut(s) | 2287 |
| BsmI | GAATGC | 3 cut(s) | 2331, 2737, 3106 |
| BsnI | GGCC | 5 cut(s) | 1392, 1654, 2178, 2971, 3121 |
| Bso31I | GGTCTC | 2 cut(s) | 38, 1490 |
| BsoBI | CYCGRG | 1 cut(s) | 1882 |
| Bsp119I | TTCGAA | 3 cut(s) | 335, 2251, 3068 |
| Bsp120I | GGGCCC | 1 cut(s) | 1390 |
| Bsp1286I | GDGCHC | 4 cut(s) | 736, 1027, 1394, 2394 |
| Bsp19I | CCATGG | 2 cut(s) | 2931, 3395 |
| BspACI | CCGC | 4 cut(s) | 727, 883, 1936, 3559 |
| BspANI | GGCC | 5 cut(s) | 1392, 1654, 2178, 2971, 3121 |
| BspCNI | CTCAG | 4 cut(s) | 511, 2246, 2549, 3025 |
| BspFNI | CGCG | 2 cut(s) | 115, 3483 |
| BspHI | TCATGA | 2 cut(s) | 2983, 3616 |
| BspLI | GGNNCC | 4 cut(s) | 1386, 1392, 2671, 2861 |
| BspMAI | CTGCAG | 1 cut(s) | 3466 |
| BspMI | ACCTGC | 2 cut(s) | 562, 1907 |
| BspOI | GCTAGC | 1 cut(s) | 1932 |
| BspPI | GGATC | 5 cut(s) | 826, 959, 1868, 3228, 3577 |
| BspT104I | TTCGAA | 3 cut(s) | 335, 2251, 3068 |
| BspT107I | GGYRCC | 1 cut(s) | 2859 |
| BspTNI | GGTCTC | 2 cut(s) | 38, 1490 |
| BsrDI | GCAATG | 4 cut(s) | 904, 1076, 2901, 3452 |
| BsrI | ACTGG | 5 cut(s) | 255, 1747, 1917, 2456, 3416 |
| BssECI | CCNNGG | 8 cut(s) | 407, 612, 670, 1231, 1676, 2931, 3131, 3395 |
| BssT1I | CCWWGG | 6 cut(s) | 407, 612, 1231, 2931, 3131, 3395 |
| Bst2UI | CCWGG | 2 cut(s) | 672, 1677 |
| Bst4CI | ACNGT | 5 cut(s) | 457, 608, 658, 1409, 1795 |
| Bst6I | CTCTTC | 1 cut(s) | 1483 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 2558, 3101, 3470 |
| BstBI | TTCGAA | 3 cut(s) | 335, 2251, 3068 |
| BstC8I | GCNNGC | 7 cut(s) | 281, 947, 1930, 1934, 2030, 3192, 3459 |
| BstDSI | CCRYGG | 2 cut(s) | 2931, 3395 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1493 |
| BstF5I | GGATG | 8 cut(s) | 193, 259, 636, 964, 1747, 2230, 2439, 2740 |
| BstFNI | CGCG | 2 cut(s) | 115, 3483 |
| BstHHI | GCGC | 3 cut(s) | 1683, 2152, 3483 |
| BstMAI | GTCTC | 8 cut(s) | 38, 793, 1490, 1686, 1968, 2463, 3278, 3619 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 2558, 2912, 3101, 3458, 3470 |
| BstNI | CCWGG | 2 cut(s) | 672, 1677 |
| BstSCI | CCNGG | 3 cut(s) | 670, 1387, 1675 |
| BstSFI | CTRYAG | 2 cut(s) | 394, 3462 |
| BstSLI | GKGCMC | 1 cut(s) | 1394 |
| BstUI | CGCG | 2 cut(s) | 115, 3483 |
| BstV2I | GAAGAC | 1 cut(s) | 500 |
| BstX2I | RGATCY | 3 cut(s) | 149, 818, 3582 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 601, 1612 |
| BstYI | RGATCY | 3 cut(s) | 149, 818, 3582 |
| BsuRI | GGCC | 5 cut(s) | 1392, 1654, 2178, 2971, 3121 |
| BtgI | CCRYGG | 2 cut(s) | 2931, 3395 |
| BtsCI | GGATG | 8 cut(s) | 193, 259, 636, 964, 1747, 2230, 2439, 2740 |
| BtsI | GCAGTG | 2 cut(s) | 274, 1168 |
| BtsIMutI | CAGTG | 3 cut(s) | 274, 1168, 1791 |
| BveI | ACCTGC | 2 cut(s) | 562, 1907 |
| Cac8I | GCNNGC | 7 cut(s) | 281, 947, 1930, 1934, 2030, 3192, 3459 |
| CciI | TCATGA | 2 cut(s) | 2983, 3616 |
| CfoI | GCGC | 3 cut(s) | 1683, 2152, 3483 |
| Cfr13I | GGNCC | 7 cut(s) | 604, 862, 1390, 1391, 1652, 2685, 2870 |
| Csp6I | GTAC | 4 cut(s) | 654, 1758, 2449, 2832 |
| CviQI | GTAC | 4 cut(s) | 654, 1758, 2449, 2832 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 302 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1960 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 302 |
| Eam1104I | CTCTTC | 1 cut(s) | 1483 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1960 |
| EarI | CTCTTC | 1 cut(s) | 1483 |
| Ecl136II | GAGCTC | 1 cut(s) | 734 |
| Eco130I | CCWWGG | 6 cut(s) | 407, 612, 1231, 2931, 3131, 3395 |
| Eco147I | AGGCCT | 1 cut(s) | 3121 |
| Eco24I | GRGCYC | 2 cut(s) | 736, 1394 |
| Eco31I | GGTCTC | 2 cut(s) | 38, 1490 |
| Eco32I | GATATC | 1 cut(s) | 2494 |
| Eco47I | GGWCC | 4 cut(s) | 604, 862, 2685, 2870 |
| Eco53kI | GAGCTC | 1 cut(s) | 734 |
| Eco57I | CTGAAG | 3 cut(s) | 284, 1056, 2610 |
| Eco88I | CYCGRG | 1 cut(s) | 1882 |
| EcoICRI | GAGCTC | 1 cut(s) | 734 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1493 |
| EcoRII | CCWGG | 2 cut(s) | 670, 1675 |
| EcoRV | GATATC | 1 cut(s) | 2494 |
| EcoT14I | CCWWGG | 6 cut(s) | 407, 612, 1231, 2931, 3131, 3395 |
| EcoT22I | ATGCAT | 1 cut(s) | 84 |
| EcoT38I | GRGCYC | 2 cut(s) | 736, 1394 |
| ErhI | CCWWGG | 6 cut(s) | 407, 612, 1231, 2931, 3131, 3395 |
| FaqI | GGGAC | 1 cut(s) | 2287 |
| FauI | CCCGC | 2 cut(s) | 734, 1929 |
| FbaI | TGATCA | 1 cut(s) | 2059 |
| FokI | GGATG | 8 cut(s) | 180, 266, 643, 971, 1734, 2237, 2426, 2727 |
| FriOI | GRGCYC | 2 cut(s) | 736, 1394 |
| GlaI | GCGC | 3 cut(s) | 1682, 2151, 3482 |
| HaeIII | GGCC | 5 cut(s) | 1392, 1654, 2178, 2971, 3121 |
| HapII | CCGG | 4 cut(s) | 1388, 1482, 2041, 3496 |
| HhaI | GCGC | 3 cut(s) | 1683, 2152, 3483 |
| Hin6I | GCGC | 3 cut(s) | 1681, 2150, 3481 |
| HinP1I | GCGC | 3 cut(s) | 1681, 2150, 3481 |
| HindIII | AAGCTT | 4 cut(s) | 281, 1782, 1827, 2631 |
| HpaII | CCGG | 4 cut(s) | 1388, 1482, 2041, 3496 |
| HphI | GGTGA | 7 cut(s) | 77, 434, 1454, 1919, 2129, 2707, 2834 |
| Hpy166II | GTNNAC | 7 cut(s) | 274, 713, 1335, 1771, 1910, 2230, 2449 |
| Hpy8I | GTNNAC | 7 cut(s) | 274, 713, 1335, 1771, 1910, 2230, 2449 |
| HpyCH4III | ACNGT | 5 cut(s) | 457, 608, 658, 1409, 1795 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 2558, 2912, 3101, 3458, 3470 |
| HspAI | GCGC | 3 cut(s) | 1681, 2150, 3481 |
| Ksp22I | TGATCA | 1 cut(s) | 2059 |
| LmnI | GCTCC | 7 cut(s) | 168, 739, 879, 1390, 2740, 2788, 3174 |
| LweI | GCATC | 6 cut(s) | 61, 91, 244, 949, 2137, 2448 |
| MaeIII | GTNAC | 7 cut(s) | 422, 433, 479, 1580, 2288, 2988, 3506 |
| MfeI | CAATTG | 4 cut(s) | 646, 783, 2689, 3543 |
| MflI | RGATCY | 3 cut(s) | 149, 818, 3582 |
| MhlI | GDGCHC | 4 cut(s) | 736, 1027, 1394, 2394 |
| MluI | ACGCGT | 1 cut(s) | 113 |
| MlyI | GAGTC | 7 cut(s) | 131, 338, 3052, 3280, 3328, 3560, 3621 |
| MmeI | TCCRAC | 4 cut(s) | 582, 821, 2603, 2700 |
| Mph1103I | ATGCAT | 1 cut(s) | 84 |
| MroXI | GAANNNNTTC | 4 cut(s) | 494, 1719, 2244, 3235 |
| MslI | CAYNNNNRTG | 4 cut(s) | 198, 1550, 2444, 3258 |
| MspI | CCGG | 4 cut(s) | 1388, 1482, 2041, 3496 |
| MspR9I | CCNGG | 3 cut(s) | 672, 1389, 1677 |
| MunI | CAATTG | 4 cut(s) | 646, 783, 2689, 3543 |
| Mva1269I | GAATGC | 3 cut(s) | 2331, 2737, 3106 |
| MvaI | CCWGG | 2 cut(s) | 672, 1677 |
| MvnI | CGCG | 2 cut(s) | 115, 3483 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 2558, 2912, 3101, 3458, 3470 |
| NciI | CCSGG | 1 cut(s) | 1389 |
| NcoI | CCATGG | 2 cut(s) | 2931, 3395 |
| NheI | GCTAGC | 1 cut(s) | 1928 |
| NlaIV | GGNNCC | 4 cut(s) | 1386, 1392, 2671, 2861 |
| NmuCI | GTSAC | 1 cut(s) | 422 |
| NsiI | ATGCAT | 1 cut(s) | 84 |
| NspV | TTCGAA | 3 cut(s) | 335, 2251, 3068 |
| PagI | TCATGA | 2 cut(s) | 2983, 3616 |
| PceI | AGGCCT | 1 cut(s) | 3121 |
| PctI | GAATGC | 3 cut(s) | 2331, 2737, 3106 |
| PdmI | GAANNNNTTC | 4 cut(s) | 494, 1719, 2244, 3235 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2682 |
| PleI | GAGTC | 7 cut(s) | 131, 338, 3052, 3280, 3328, 3559, 3621 |
| PpsI | GAGTC | 7 cut(s) | 131, 338, 3052, 3280, 3328, 3559, 3621 |
| PshBI | ATTAAT | 3 cut(s) | 6, 177, 1155 |
| Psp124BI | GAGCTC | 1 cut(s) | 736 |
| Psp6I | CCWGG | 2 cut(s) | 670, 1675 |
| PspGI | CCWGG | 2 cut(s) | 670, 1675 |
| PspN4I | GGNNCC | 4 cut(s) | 1386, 1392, 2671, 2861 |
| PspOMI | GGGCCC | 1 cut(s) | 1390 |
| PspPI | GGNCC | 7 cut(s) | 604, 862, 1390, 1391, 1652, 2685, 2870 |
| PstI | CTGCAG | 1 cut(s) | 3466 |
| PsuI | RGATCY | 3 cut(s) | 149, 818, 3582 |
| RsaI | GTAC | 4 cut(s) | 655, 1759, 2450, 2833 |
| RsaNI | GTAC | 4 cut(s) | 654, 1758, 2449, 2832 |
| RseI | CAYNNNNRTG | 4 cut(s) | 198, 1550, 2444, 3258 |
| SacI | GAGCTC | 1 cut(s) | 736 |
| Sau96I | GGNCC | 7 cut(s) | 604, 862, 1390, 1391, 1652, 2685, 2870 |
| ScaI | AGTACT | 1 cut(s) | 655 |
| SchI | GAGTC | 7 cut(s) | 131, 338, 3052, 3280, 3328, 3560, 3621 |
| ScrFI | CCNGG | 3 cut(s) | 672, 1389, 1677 |
| SduI | GDGCHC | 4 cut(s) | 736, 1027, 1394, 2394 |
| SfaNI | GCATC | 6 cut(s) | 61, 91, 244, 949, 2137, 2448 |
| SfcI | CTRYAG | 2 cut(s) | 394, 3462 |
| SfuI | TTCGAA | 3 cut(s) | 335, 2251, 3068 |
| SinI | GGWCC | 4 cut(s) | 604, 862, 2685, 2870 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 198, 1550, 2444, 3258 |
| SmlI | CTYRAG | 3 cut(s) | 1076, 1710, 2486 |
| SmoI | CTYRAG | 3 cut(s) | 1076, 1710, 2486 |
| SseBI | AGGCCT | 1 cut(s) | 3121 |
| SsiI | CCGC | 4 cut(s) | 727, 883, 1936, 3559 |
| SspI | AATATT | 1 cut(s) | 1837 |
| SstI | GAGCTC | 1 cut(s) | 736 |
| StuI | AGGCCT | 1 cut(s) | 3121 |
| StyD4I | CCNGG | 3 cut(s) | 670, 1387, 1675 |
| StyI | CCWWGG | 6 cut(s) | 407, 612, 1231, 2931, 3131, 3395 |
| TaaI | ACNGT | 5 cut(s) | 457, 608, 658, 1409, 1795 |
| TatI | WGTACW | 3 cut(s) | 653, 1757, 2448 |
| TscAI | CASTG | 3 cut(s) | 281, 1168, 1798 |
| TseFI | GTSAC | 1 cut(s) | 422 |
| Tsp45I | GTSAC | 1 cut(s) | 422 |
| TspGWI | ACGGA | 1 cut(s) | 3494 |
| TspRI | CASTG | 3 cut(s) | 281, 1168, 1798 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2682 |
| VpaK11BI | GGWCC | 4 cut(s) | 604, 862, 2685, 2870 |
| VspI | ATTAAT | 3 cut(s) | 6, 177, 1155 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1493 |
| XapI | RAATTY | 8 cut(s) | 234, 704, 1315, 1469, 1504, 2068, 2125, 3231 |
| XbaI | TCTAGA | 1 cut(s) | 1061 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1739 |
| XmnI | GAANNNNTTC | 4 cut(s) | 494, 1719, 2244, 3235 |
| ZrmI | AGTACT | 1 cut(s) | 655 |
| Zsp2I | ATGCAT | 1 cut(s) | 84 |