Rh6BG242500

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0006991
Physical Location & Seq
Forward (+)
45097122 .. 45097937
816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG242500.1

Sequence Viewer

Length: 561 bp
ATGCTTAAAATTAGGGAGCTTTGCCAATCTTTCTTTGCTAATATCATTGGTGATGGTCGTACTACTTCTTTGTGGTTTGATAATTGGCACCCTCTTGGTCCTCTTACTCTTAGATGGTCATCTAATATCATTGCTGATTCTGCTCTCTCTACCTCTGCCATGGTCAGTGATGTTATCTATAATAATAATTGGAGATGGCCTTCTCTCTCTCACGAGTTACTAGAGATTCGTGTTTCATTGACCCAAATCATTCCTAACTCTGAGGTTAGTGATTCTGTTCGATGGACTCTTTCTTCAAATGGGGTTTTTTCAACTTCTTCTGCATGGAATGCTCTTCGTTTTTCTAGGCCTATTGTTCCTTGGTATCATTTAGTCTGGTTTGGTAGTTGTGTTCCTAAATGGAGCTTCATCTTATGGCTTGCTATTAGAGGAAGGTTATCAACTATGGATCGTGTAAGAATTTTTTCTCCTCTTGCTGCCCATGACTGTGCTTTTTGTCTTGCTGCTGATGAGACTCACAACCATCTTTTCTTTGAGTGTGTTTATACCTCTGGCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RVT

Protein Analysis

186

Amino Acids

21.29

Weight (kDa)

7.0

Isoelectric Point (pI)

47.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 103 - 184 1.8e-20 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 87
AclWI GGATC 1 cut(s) 456
AcsI RAATTY 1 cut(s) 459
AfaI GTAC 1 cut(s) 61
AgsI TTSAA 2 cut(s) 297, 312
AluBI AGCT 2 cut(s) 19, 405
AluI AGCT 2 cut(s) 19, 405
Alw26I GTCTC 1 cut(s) 506
AlwI GGATC 1 cut(s) 456
AoxI GGCC 2 cut(s) 197, 347
ApeKI GCWGC 2 cut(s) 476, 503
ApoI RAATTY 1 cut(s) 459
Asp700I GAANNNNTTC 1 cut(s) 463
AspS9I GGNCC 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 62
AvaII GGWCC 1 cut(s) 98
BanI GGYRCC 1 cut(s) 87
BauI CACGAG 1 cut(s) 212
BbvI GCAGC 2 cut(s) 463, 490
BccI CCATC 5 cut(s) 47, 108, 189, 276, 531
BcoDI GTCTC 1 cut(s) 506
BfaI CTAG 2 cut(s) 221, 345
BisI GCNGC 2 cut(s) 477, 504
BlsI GCNGC 2 cut(s) 478, 505
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 98
BmiI GGNNCC 1 cut(s) 89
BsaBI GATNNNNATC 1 cut(s) 118
BsaJI CCNNGG 2 cut(s) 159, 359
Bse3DI GCAATG 1 cut(s) 129
Bse8I GATNNNNATC 1 cut(s) 118
BseDI CCNNGG 2 cut(s) 159, 359
BseJI GATNNNNATC 1 cut(s) 118
BseMI GCAATG 1 cut(s) 129
BseMII CTCAG 1 cut(s) 252
BseRI GAGGAG 1 cut(s) 459
BseXI GCAGC 2 cut(s) 463, 490
BshFI GGCC 2 cut(s) 199, 349
BshNI GGYRCC 1 cut(s) 87
BsmAI GTCTC 1 cut(s) 506
BsmI GAATGC 1 cut(s) 334
BsnI GGCC 2 cut(s) 199, 349
Bsp143I GATC 1 cut(s) 448
Bsp19I CCATGG 1 cut(s) 159
BspANI GGCC 2 cut(s) 199, 349
BspCNI CTCAG 1 cut(s) 253
BspLI GGNNCC 1 cut(s) 89
BspPI GGATC 1 cut(s) 456
BspQI GCTCTTC 1 cut(s) 339
BspT107I GGYRCC 1 cut(s) 87
BsrDI GCAATG 1 cut(s) 129
BssECI CCNNGG 2 cut(s) 159, 359
BssMI GATC 1 cut(s) 448
BssSI CACGAG 1 cut(s) 212
BssT1I CCWWGG 2 cut(s) 159, 359
Bst2BI CACGAG 1 cut(s) 212
Bst4CI ACNGT 1 cut(s) 488
Bst6I CTCTTC 1 cut(s) 339
BstAPI GCANNNNNTGC 1 cut(s) 329
BstC8I GCNNGC 1 cut(s) 420
BstDEI CTNAG 2 cut(s) 110, 261
BstDSI CCRYGG 1 cut(s) 159
BstKTI GATC 1 cut(s) 451
BstMAI GTCTC 1 cut(s) 506
BstMBI GATC 1 cut(s) 448
BstMWI GCNNNNNNNGC 2 cut(s) 140, 329
BstV1I GCAGC 2 cut(s) 463, 490
BsuRI GGCC 2 cut(s) 199, 349
BtgI CCRYGG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 172
Cac8I GCNNGC 1 cut(s) 420
Cfr13I GGNCC 1 cut(s) 98
Csp6I GTAC 1 cut(s) 60
CviAII CATG 3 cut(s) 160, 324, 482
CviJI RGCY 5 cut(s) 19, 199, 349, 405, 418
CviKI_1 RGCY 5 cut(s) 19, 199, 349, 405, 418
CviQI GTAC 1 cut(s) 60
DdeI CTNAG 2 cut(s) 110, 261
DpnI GATC 1 cut(s) 450
DpnII GATC 1 cut(s) 448
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Eco130I CCWWGG 2 cut(s) 159, 359
Eco147I AGGCCT 1 cut(s) 349
Eco47I GGWCC 1 cut(s) 98
EcoT14I CCWWGG 2 cut(s) 159, 359
ErhI CCWWGG 2 cut(s) 159, 359
FaeI CATG 3 cut(s) 163, 327, 485
FaiI YATR 7 cut(s) 161, 180, 325, 415, 446, 483, 546
FatI CATG 3 cut(s) 159, 323, 481
Fnu4HI GCNGC 2 cut(s) 477, 504
Fsp4HI GCNGC 2 cut(s) 477, 504
FspBI CTAG 2 cut(s) 221, 345
GluI GCNGC 2 cut(s) 477, 504
HaeIII GGCC 2 cut(s) 199, 349
Hin1II CATG 3 cut(s) 163, 327, 485
HinfI GANTC 5 cut(s) 137, 226, 272, 286, 514
HphI GGTGA 1 cut(s) 62
Hpy188I TCNGA 1 cut(s) 262
Hpy188III TCNNGA 1 cut(s) 212
HpyAV CCTTC 2 cut(s) 210, 426
HpyCH4III ACNGT 1 cut(s) 488
HpyCH4V TGCA 1 cut(s) 323
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 329
HpyF3I CTNAG 2 cut(s) 110, 261
Hsp92II CATG 3 cut(s) 163, 327, 485
Kzo9I GATC 1 cut(s) 448
LguI GCTCTTC 1 cut(s) 339
LmnI GCTCC 2 cut(s) 16, 402
LpnPI CCDG 2 cut(s) 361, 537
Lsp1109I GCAGC 2 cut(s) 463, 490
MaeI CTAG 2 cut(s) 221, 345
MaeIII GTNAC 1 cut(s) 216
MalI GATC 1 cut(s) 450
MboI GATC 1 cut(s) 448
MboII GAAGA 3 cut(s) 285, 309, 326
MluCI AATT 4 cut(s) 9, 82, 187, 459
MlyI GAGTC 2 cut(s) 280, 508
MnlI CCTC 7 cut(s) 102, 111, 163, 256, 422, 480, 559
MroXI GAANNNNTTC 1 cut(s) 463
MseI TTAA 1 cut(s) 6
MslI CAYNNNNRTG 1 cut(s) 486
Mva1269I GAATGC 1 cut(s) 334
MwoI GCNNNNNNNGC 2 cut(s) 140, 329
NcoI CCATGG 1 cut(s) 159
NdeII GATC 1 cut(s) 448
NlaIII CATG 3 cut(s) 163, 327, 485
NlaIV GGNNCC 1 cut(s) 89
PceI AGGCCT 1 cut(s) 349
PciSI GCTCTTC 1 cut(s) 339
PctI GAATGC 1 cut(s) 334
PdmI GAANNNNTTC 1 cut(s) 463
PfeI GAWTC 3 cut(s) 137, 226, 272
PkrI GCNGC 2 cut(s) 478, 505
PleI GAGTC 2 cut(s) 280, 508
PpsI GAGTC 2 cut(s) 280, 508
PspN4I GGNNCC 1 cut(s) 89
PspPI GGNCC 1 cut(s) 98
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
RseI CAYNNNNRTG 1 cut(s) 486
SapI GCTCTTC 1 cut(s) 339
SaqAI TTAA 1 cut(s) 6
SatI GCNGC 2 cut(s) 477, 504
Sau3AI GATC 1 cut(s) 448
Sau96I GGNCC 1 cut(s) 98
SchI GAGTC 2 cut(s) 280, 508
SetI ASST 6 cut(s) 21, 155, 267, 407, 437, 551
SinI GGWCC 1 cut(s) 98
SmiMI CAYNNNNRTG 1 cut(s) 486
Sse9I AATT 4 cut(s) 9, 82, 187, 459
SseBI AGGCCT 1 cut(s) 349
SspMI CTAG 2 cut(s) 221, 345
StuI AGGCCT 1 cut(s) 349
StyI CCWWGG 2 cut(s) 159, 359
TaaI ACNGT 1 cut(s) 488
TaqI TCGA 1 cut(s) 280
TasI AATT 4 cut(s) 9, 82, 187, 459
TfiI GAWTC 3 cut(s) 137, 226, 272
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TscAI CASTG 1 cut(s) 172
TseI GCWGC 2 cut(s) 476, 503
TspDTI ATGAA 2 cut(s) 225, 397
TspRI CASTG 1 cut(s) 172
VpaK11BI GGWCC 1 cut(s) 98
XapI RAATTY 1 cut(s) 459
XmnI GAANNNNTTC 1 cut(s) 463
XspI CTAG 2 cut(s) 221, 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.