Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0006991

Physical Location & Seq

Genomic Coordinates Reverse (-)

59363736 .. 59364221

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG451600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGAAGGAGTTCAACTCTTGTCTTCATAATTCTGAGCTTGATGATCTTAACTACTTTGGTATTTACTATTCTTGGAGTAATAAGCAGGTTGATGGTAATTTTATTTCCAGAAAGTTGGACCGTGCCTTGGTTAATCAGTATTGGATGAAATATTTTCCCAACTGTAGTATTGTGTTCTTGCCCCCTGGTATTTCTGACCATGCTGTTTTGGTGGTTAAATTTGATTTACCGATTAGAACCCGCAGAGCTCCCTTTAAGTTCTTCAGCTTCTTAGCTGATAGGGAAGATTTCCTTCCAATTGTCTCCGGTGTGTGGGCCACCAATGTTCTGGGATCTAAACAATTCCAAGTCTGTTGGAAGCTTAAACTTGTAAAGGACCAATTCAAGCTCCTCAACCGCAACTCTATTGGCAATGTTTCATCCTTAGTTTCTAATTGCAAAGCAGCATTAGATAACTGCCAGCGTTTGCTTGATGCTGATCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4283 zf-CCHC_4

Protein Analysis

161

Amino Acids

18.6

Weight (kDa)

8.99

Isoelectric Point (pI)

22.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G40390 AT1G43760
fragaria_vesca	FvH4_2g05581 FvH4_3g29012
rosa_laevigata	RLG00000017307
rosa_multiflora	Rmu_sc0000447.1_g000013 Rmu_sc0000647.1_g000017 Rmu_sc0001616.1_g000010 Rmu_sc0004932.1_g000002 Rmu_sc0032291.1_g000001 Rmu_sc0035385.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031810
rosa_samantha	Rh3BG325500 Rh3BG325600 Rh3BG372000 Rh3BG372200 Rh4CG249400 Rh5CG378300 Rh6BG242500 Rh6CG069600 Rh6DG066600 Rh7CG451600 Rh7CG469200 Rh7DG357300
rosa_wichuraiana	Rw4G014200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	76
AciI	CCGC	2 cut(s)	241, 397
AclWI	GGATC	2 cut(s)	340, 473
AcsI	RAATTY	1 cut(s)	218
AcuI	CTGAAG	1 cut(s)	247
AfiI	CCNNNNNNNGG	2 cut(s)	127, 312
AgsI	TTSAA	2 cut(s)	13, 385
AjnI	CCWGG	1 cut(s)	184
AluBI	AGCT	6 cut(s)	37, 248, 267, 275, 361, 388
AluI	AGCT	6 cut(s)	37, 248, 267, 275, 361, 388
Alw21I	GWGCWC	1 cut(s)	250
Alw26I	GTCTC	1 cut(s)	307
AlwI	GGATC	2 cut(s)	340, 473
AoxI	GGCC	1 cut(s)	315
ApeKI	GCWGC	1 cut(s)	443
ApoI	RAATTY	1 cut(s)	218
Asp700I	GAANNNNTTC	1 cut(s)	8
AspS9I	GGNCC	3 cut(s)	118, 315, 376
AvaII	GGWCC	2 cut(s)	118, 376
BanII	GRGCYC	1 cut(s)	250
BbsI	GAAGAC	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	250
BbvI	GCAGC	1 cut(s)	455
BccI	CCATC	1 cut(s)	86
BciT130I	CCWGG	1 cut(s)	186
BcoDI	GTCTC	1 cut(s)	307
BfmI	CTRYAG	1 cut(s)	163
BfuAI	ACCTGC	1 cut(s)	76
BisI	GCNGC	1 cut(s)	444
BlsI	GCNGC	1 cut(s)	445
Bme1390I	CCNGG	1 cut(s)	186
Bme18I	GGWCC	2 cut(s)	118, 376
BmgT120I	GGNCC	3 cut(s)	118, 315, 376
BmrFI	CCNGG	1 cut(s)	186
BmsI	GCATC	1 cut(s)	463
BpiI	GAAGAC	1 cut(s)	14
BplI	GAGNNNNNCTC	1 cut(s)	31
BsaBI	GATNNNNATC	1 cut(s)	477
BsaJI	CCNNGG	2 cut(s)	126, 184
BsaWI	WCCGGW	1 cut(s)	305
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 312
Bse3DI	GCAATG	1 cut(s)	418
Bse8I	GATNNNNATC	1 cut(s)	477
BseBI	CCWGG	1 cut(s)	186
BseDI	CCNNGG	2 cut(s)	126, 184
BseGI	GGATG	2 cut(s)	150, 419
BseJI	GATNNNNATC	1 cut(s)	477
BseLI	CCNNNNNNNGG	2 cut(s)	127, 312
BseMI	GCAATG	1 cut(s)	418
BseMII	CTCAG	1 cut(s)	24
BseRI	GAGGAG	1 cut(s)	380
BseXI	GCAGC	1 cut(s)	455
BshFI	GGCC	1 cut(s)	317
BsiHKAI	GWGCWC	1 cut(s)	250
BsiSI	CCGG	1 cut(s)	306
BslI	CCNNNNNNNGG	2 cut(s)	127, 312
BsmAI	GTCTC	1 cut(s)	307
BsnI	GGCC	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp143I	GATC	3 cut(s)	43, 332, 478
BspACI	CCGC	2 cut(s)	241, 397
BspANI	GGCC	1 cut(s)	317
BspCNI	CTCAG	1 cut(s)	25
BspMI	ACCTGC	1 cut(s)	76
BspPI	GGATC	2 cut(s)	340, 473
BsrDI	GCAATG	1 cut(s)	418
BssECI	CCNNGG	2 cut(s)	126, 184
BssMI	GATC	3 cut(s)	43, 332, 478
BssT1I	CCWWGG	1 cut(s)	126
Bst2UI	CCWGG	1 cut(s)	186
Bst4CI	ACNGT	2 cut(s)	122, 164
BstC8I	GCNNGC	1 cut(s)	461
BstDEI	CTNAG	3 cut(s)	33, 271, 424
BstF5I	GGATG	2 cut(s)	150, 419
BstKTI	GATC	3 cut(s)	46, 335, 481
BstMAI	GTCTC	1 cut(s)	307
BstMBI	GATC	3 cut(s)	43, 332, 478
BstNI	CCWGG	1 cut(s)	186
BstSCI	CCNGG	1 cut(s)	184
BstSFI	CTRYAG	1 cut(s)	163
BstV1I	GCAGC	1 cut(s)	455
BstV2I	GAAGAC	1 cut(s)	14
BstX2I	RGATCY	1 cut(s)	332
BstXI	CCANNNNNNTGG	2 cut(s)	115, 328
BstYI	RGATCY	1 cut(s)	332
BsuRI	GGCC	1 cut(s)	317
BtsCI	GGATG	2 cut(s)	150, 419
BveI	ACCTGC	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	461
Cfr13I	GGNCC	3 cut(s)	118, 315, 376
CviAII	CATG	1 cut(s)	200
CviJI	RGCY	7 cut(s)	37, 248, 267, 275, 317, 361, 388
CviKI_1	RGCY	7 cut(s)	37, 248, 267, 275, 317, 361, 388
DdeI	CTNAG	3 cut(s)	33, 271, 424
DpnI	GATC	3 cut(s)	45, 334, 480
DpnII	GATC	3 cut(s)	43, 332, 478
Ecl136II	GAGCTC	1 cut(s)	248
Eco130I	CCWWGG	1 cut(s)	126
Eco24I	GRGCYC	1 cut(s)	250
Eco47I	GGWCC	2 cut(s)	118, 376
Eco53kI	GAGCTC	1 cut(s)	248
Eco57I	CTGAAG	1 cut(s)	247
EcoICRI	GAGCTC	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	126
EcoT38I	GRGCYC	1 cut(s)	250
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	1 cut(s)	203
FaiI	YATR	2 cut(s)	27, 201
FalI	AAGNNNNNCTT	2 cut(s)	276, 308
FatI	CATG	1 cut(s)	199
FauI	CCCGC	1 cut(s)	248
Fnu4HI	GCNGC	1 cut(s)	444
FokI	GGATG	2 cut(s)	157, 406
FriOI	GRGCYC	1 cut(s)	250
Fsp4HI	GCNGC	1 cut(s)	444
GluI	GCNGC	1 cut(s)	444
HaeIII	GGCC	1 cut(s)	317
HapII	CCGG	1 cut(s)	306
Hin1II	CATG	1 cut(s)	203
HindIII	AAGCTT	1 cut(s)	359
HpaII	CCGG	1 cut(s)	306
Hpy188I	TCNGA	2 cut(s)	34, 196
Hpy188III	TCNNGA	1 cut(s)	108
HpyAV	CCTTC	1 cut(s)	302
HpyCH4III	ACNGT	2 cut(s)	122, 164
HpyCH4V	TGCA	1 cut(s)	438
HpyF3I	CTNAG	3 cut(s)	33, 271, 424
Hsp92II	CATG	1 cut(s)	203
Kzo9I	GATC	3 cut(s)	43, 332, 478
LmnI	GCTCC	2 cut(s)	253, 393
LpnPI	CCDG	7 cut(s)	71, 121, 171, 198, 314, 319, 473
Lsp1109I	GCAGC	1 cut(s)	455
LweI	GCATC	1 cut(s)	463
MalI	GATC	3 cut(s)	45, 334, 480
MboI	GATC	3 cut(s)	43, 332, 478
MboII	GAAGA	3 cut(s)	14, 253, 296
MfeI	CAATTG	1 cut(s)	297
MflI	RGATCY	1 cut(s)	332
MhlI	GDGCHC	1 cut(s)	250
MluCI	AATT	7 cut(s)	28, 97, 218, 297, 341, 380, 433
MmeI	TCCRAC	2 cut(s)	96, 335
MnlI	CCTC	1 cut(s)	401
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	6 cut(s)	48, 132, 216, 255, 363, 484
MspI	CCGG	1 cut(s)	306
MspR9I	CCNGG	1 cut(s)	186
MunI	CAATTG	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	186
NdeII	GATC	3 cut(s)	43, 332, 478
NlaIII	CATG	1 cut(s)	203
PdmI	GAANNNNTTC	1 cut(s)	8
PkrI	GCNGC	1 cut(s)	445
Psp124BI	GAGCTC	1 cut(s)	250
Psp6I	CCWGG	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	184
PspPI	GGNCC	3 cut(s)	118, 315, 376
PsuI	RGATCY	1 cut(s)	332
SacI	GAGCTC	1 cut(s)	250
SaqAI	TTAA	6 cut(s)	48, 132, 216, 255, 363, 484
SatI	GCNGC	1 cut(s)	444
Sau3AI	GATC	3 cut(s)	43, 332, 478
Sau96I	GGNCC	3 cut(s)	118, 315, 376
ScrFI	CCNGG	1 cut(s)	186
SduI	GDGCHC	1 cut(s)	250
SetI	ASST	7 cut(s)	39, 90, 250, 269, 277, 363, 390
SfaNI	GCATC	1 cut(s)	463
SfcI	CTRYAG	1 cut(s)	163
SinI	GGWCC	2 cut(s)	118, 376
Sse9I	AATT	7 cut(s)	28, 97, 218, 297, 341, 380, 433
SsiI	CCGC	2 cut(s)	241, 397
SspI	AATATT	1 cut(s)	152
SstI	GAGCTC	1 cut(s)	250
StyD4I	CCNGG	1 cut(s)	184
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	2 cut(s)	122, 164
TasI	AATT	7 cut(s)	28, 97, 218, 297, 341, 380, 433
Tru1I	TTAA	6 cut(s)	48, 132, 216, 255, 363, 484
Tru9I	TTAA	6 cut(s)	48, 132, 216, 255, 363, 484
TseI	GCWGC	1 cut(s)	443
TspDTI	ATGAA	4 cut(s)	14, 17, 161, 408
VpaK11BI	GGWCC	2 cut(s)	118, 376
XapI	RAATTY	1 cut(s)	218
XcmI	CCANNNNNNNNNTGG	1 cut(s)	325
XmnI	GAANNNNTTC	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.